IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
76	 48.59	0	76210..76635	-	141	15640108	-	VC0076	-	universal stress protein A
77	 43.75	0	76681..76776	+	31	15640109	-	VC0077	-	hypothetical protein
78	 44.51	0	76782..77327	+	181	15640110	-	VC0078	-	ferritin
79	 47.53	0	77403..77726	+	107	15640111	-	VC0079	-	universal stress protein UspB
80	 51.96	+1	77859..79055	+	398	15640112	-	VC0080	-	hypothetical protein
81	 50.66	0	79052..79963	-	303	15640113	-	VC0081	-	hypothetical protein
82	 50.58	0	80077..81618	+	513	15640114	-	VC0082	-	hypothetical protein
83	 49.55	0	81663..82445	+	260	15640115	ubiE	VC0083	-	ubiquinone/menaquinone biosynthesis methyltransferase
84	 50.80	0	82454..83077	+	207	15640116	-	VC0084	-	hypothetical protein
85	 49.17	0	83074..84708	+	544	15640117	ubiB	VC0085	-	putative ubiquinone biosynthesis protein UbiB
86	 44.58	0	84768..85016	+	82	15640118	tatA	VC0086	-	twin argininte translocase protein A
87	 52.99	+1	85020..85421	+	133	15640119	-	VC0087	-	sec-independent translocase
88	 48.47	0	85510..86262	+	250	15640120	-	VC0088	-	hypothetical protein
89	 47.70	0	86574..87575	+	333	15640121	-	VC0089	-	cytochrome c551 peroxidase
90	 51.28	0	87681..89045	-	454	15640122	-	VC0090	-	DNA-damage-inducible protein F
91	 50.34	0	89116..89985	-	289	15640123	-	VC0091	-	O-methyltransferase-related protein
92	 52.70	+1	90013..90642	-	209	15640124	-	VC0092	-	LexA repressor
93	 51.79	+1	90962..93388	+	808	161582036	-	VC0093	-	glycerol-3-phosphate acyltransferase
94	 49.59	0	93464..94318	-	284	15640126	ubiA	VC0094	-	4-hydroxybenzoate octaprenyltransferase
95	 46.74	0	94319..94870	-	183	15640127	-	VC0095	-	chorismate--pyruvate lyase
96	 39.39	-1	94893..94991	-	32	15640128	-	VC0096	-	hypothetical protein
97	 45.74	0	95062..95472	+	136	15640129	-	VC0097	-	flagellar basal body-associated protein FliL-like protein
98	 51.67	0	95592..97571	-	659	15640130	-	VC0098	-	methyl-accepting chemotaxis protein
99	 48.32	0	97946..98779	-	277	15640131	-	VC0099	-	glpG protein
100	 46.11	0	98786..99106	-	106	15640132	glpE	VC0100	-	thiosulfate sulfurtransferase
101	 36.57	-2	99187..99402	-	71	15640133	-	VC0101	-	hypothetical protein
102	 38.30	-2	99635..99775	-	46	15640134	-	VC0102	-	hypothetical protein
103	 45.96	0	99867..100634	-	255	15640135	-	VC0103	-	hypothetical protein
104	 47.41	0	100690..100824	-	44	15640136	-	VC0104	-	hypothetical protein
105	 49.62	0	100811..101854	+	347	15640137	-	VC0105	-	delta-aminolevulinic acid dehydratase
106	 43.06	-1	101958..102389	+	143	15640138	-	VC0106	-	hypothetical protein
107	 36.23	-2	102908..103045	-	45	15640139	-	VC0107	-	hypothetical protein
108	 50.20	0	103098..105902	+	934	15640140	-	VC0108	-	DNA polymerase I
109	 54.39	+1	105855..105968	-	37	15640141	-	VC0109	-	hypothetical protein
110	 44.44	0	106165..106299	+	44	15640142	-	VC0110	-	hypothetical protein
111	 47.66	0	106649..107311	-	220	15640143	-	VC0111	-	GTPase EngB
112	 48.81	0	107409..108080	+	223	15640144	-	VC0112	-	cytochrome c4
113	 46.94	0	108252..108920	+	222	15640145	-	VC0113	-	methyltransferase-related protein
114	 51.18	0	108920..109468	+	182	15640146	-	VC0114	-	hypothetical protein
115	 50.00	0	109475..109966	+	163	15640147	-	VC0115	-	hypothetical protein
116	 47.96	0	110051..111493	+	480	15640148	-	VC0116	-	coproporphyrinogen III oxidase
117	 50.79	0	111557..112753	-	398	15640149	-	VC0117	-	hemY protein
118	 52.00	+1	112750..113949	-	399	15640150	-	VC0118	-	uroporphyrin-III C-methyltransferase, putative
119	 50.32	0	113933..114715	-	260	15640151	hemD	VC0119	-	uroporphyrinogen-III synthase
120	 54.19	+1	114761..115714	-	317	15640152	hemC	VC0120	-	porphobilinogen deaminase
121	 39.46	-1	115891..116037	-	48	15640153	-	VC0121	-	hypothetical protein
122	 48.82	0	116053..118584	+	843	15640154	cyaA	VC0122	-	adenylate cyclase
123	 48.57	0	118690..119004	-	104	15640155	cyaY	VC0123	-	frataxin-like protein
124	 50.40	0	119229..120482	+	417	15640156	-	VC0125	-	diaminopimelate decarboxylase
125	 52.23	+1	120494..121324	+	276	161582035	dapF	VC0126	-	diaminopimelate epimerase
126	 52.50	+1	121338..122036	+	232	15640158	-	VC0127	-	hypothetical protein
127	 51.82	+1	122005..122940	+	311	15640159	xerC	VC0128	-	site-specific tyrosine recombinase XerC
128	 52.08	+1	122943..123662	+	239	15640160	-	VC0129	-	hypothetical protein
129	 52.09	+1	123772..126261	+	829	15640161	-	VC0130	-	GGDEF family protein
130	 54.77	+1	126294..126890	-	198	15640162	-	VC0131	-	hypothetical protein
131	 52.43	+1	126887..128431	-	514	15640163	-	VC0132	-	hypothetical protein
132	 47.09	0	128444..128632	+	62	15640164	-	VC0133	-	hypothetical protein
133	 47.95	0	128715..129542	-	275	15640165	-	VC0134	-	hypothetical protein
134	 47.00	0	129657..130673	-	338	15640166	-	VC0135	-	lysophospholipase L2
135	 47.90	0	130748..131365	+	205	15640167	rhtB	VC0136	-	homoserine/homoserine lactone efflux protein
136	 48.73	0	131313..132611	+	432	15640168	-	VC0137	-	hypothetical protein
137	 54.17	+1	132619..132738	-	39	15640169	-	VC0138	-	hypothetical protein
138	 46.50	0	132791..133261	-	156	15640170	-	VC0139	-	DPS family protein
139	 45.45	0	133431..133760	-	109	15640171	-	VC0140	-	hypothetical protein
140	 40.95	-1	133799..133903	+	34	15640172	-	VC0141	-	hypothetical protein
141	 43.09	-1	133965..134333	+	122	15640173	-	VC0142	-	hypothetical protein
142	 25.58	-2	134836..135093	+	85	15640174	-	VC0143	-	hypothetical protein
143	 48.57	0	135210..135839	+	209	15640175	-	VC0144	-	hypothetical protein
144	 44.57	0	135888..136154	-	88	15640176	-	VC0145	-	hypothetical protein
145	 49.83	0	136151..136750	-	199	15640177	-	VC0146	-	hypothetical protein
146	 49.66	0	136954..138129	+	391	15640178	-	VC0147	-	cell division protein FtsY
147	 50.85	0	138151..138852	+	233	15640179	-	VC0148	-	cell division ATP-binding protein FtsE
148	 48.74	0	138842..139834	+	330	15640180	-	VC0149	-	cell division protein FtsX
149	 49.94	0	140004..140864	+	286	15640181	-	VC0150	-	RNA polymerase factor sigma-32
150	 49.32	0	141066..142466	-	466	15640182	-	VC0151	-	soluble pyridine nucleotide transhydrogenase
151	 51.87	+1	142774..143415	+	213	15640183	-	VC0152	-	DNA-binding transcriptional repressor FabR
152	 48.12	0	143455..143826	+	123	15640184	-	VC0153	-	hypothetical protein
153	 47.84	0	143863..144972	-	369	15640185	-	VC0154	-	tRNA (uracil-5-)-methyltransferase
154	 43.25	0	145370..147205	+	611	15640186	-	VC0156	-	vitamin B12 receptor
155	 46.64	0	147278..148885	-	535	15640187	-	VC0157	-	alkaline serine protease
156	 47.62	0	149278..150075	+	265	15640188	-	VC0158	-	glutamate racemase
157	 44.44	0	150041..150499	-	152	15640189	-	VC0159	-	RNA-binding protein
158	 35.00	-2	150905..151024	+	39	15640190	-	VC0160	-	hypothetical protein
159	 48.16	0	156407..157303	-	298	15640191	-	VC0161	-	DNA-binding transcriptional regulator IlvY
160	 47.61	0	157441..158925	+	494	15640192	-	VC0162	-	ketol-acid reductoisomerase
161	 46.03	0	159052..159303	-	83	15640193	-	VC0163	-	hypothetical protein
162	 50.05	0	159419..162529	-	1036	15640194	-	VC0164	-	multidrug resistance protein, putative
163	 47.15	0	162541..163647	-	368	15640195	-	VC0165	-	hypothetical protein
164	 42.38	-1	163666..164262	-	198	15640196	-	VC0166	-	TetR family transcriptional regulator
165	 48.76	0	164408..166423	+	671	15640197	-	VC0167	-	ATP-dependent DNA helicase Rep
166	 50.25	0	166490..166897	-	135	15640198	-	VC0168	-	cytochrome c5
167	 30.36	-2	168232..168399	-	55	15640199	-	VC0169	-	hypothetical protein
168	 50.29	0	168532..170247	+	571	15640200	-	VC0170	-	peptide ABC transporter, ATP-binding protein
169	 47.70	0	170267..171895	+	542	15640201	-	VC0171	-	peptide ABC transporter, periplasmic peptide-binding protein
170	 50.15	0	171999..173027	+	342	15640202	-	VC0172	-	peptide ABC transporter, permease protein
171	 50.69	0	173030..173968	+	312	15640203	-	VC0173	-	peptide ABC transporter, permease protein
172	 52.00	+1	174143..175090	+	315	15640204	-	VC0174	-	hypothetical protein
173	 36.90	-2	175343..176941	-	532	15640205	-	VC0175	-	deoxycytidylate deaminase-related protein
174	 39.16	-1	177450..177758	-	102	15640206	-	VC0176	-	transcriptional regulator, putative
175	 37.77	-2	177861..178424	+	187	15640207	-	VC0177	-	hypothetical protein
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.