IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1129	 42.37	-1	1212670..1212990	+	106	15641156	clpS	VC1143	-	ATP-dependent Clp protease adaptor protein ClpS
1130	 48.66	0	1213029..1215299	+	756	15641157	clpA	VC1144	-	ATP-dependent Clp protease ATP-binding subunit
1131	 47.35	0	1215368..1217044	-	558	15641158	-	VC1145	-	hypothetical protein
1132	 44.70	0	1217246..1217509	-	87	161582012	grxA	VC1146	-	glutaredoxin 1
1133	 51.69	+1	1217797..1219065	+	422	15641160	-	VC1147	-	iron-containing alcohol dehydrogenase
1134	 46.32	0	1219156..1220010	-	284	15641161	-	VC1148	-	DNA-binding transcriptional regulator HexR
1135	 48.27	0	1220318..1221964	-	548	15641162	-	VC1149	-	glutamate decarboxylase, putative
1136	 46.04	0	1222074..1222679	-	201	15641163	-	VC1150	-	hypothetical protein
1137	 48.23	0	1222772..1223677	-	301	15641164	-	VC1151	-	hypothetical protein
1138	 44.12	0	1223698..1224633	-	311	15641165	-	VC1152	-	hypothetical protein
1139	 45.81	0	1224975..1225583	+	202	15641166	-	VC1153	-	hypothetical protein
1140	 50.82	0	1225679..1226227	-	182	15641167	-	VC1154	-	hypothetical protein
1141	 47.44	0	1226418..1226963	-	181	15641168	-	VC1155	-	response regulator
1142	 46.53	0	1226912..1228207	-	431	15641169	-	VC1156	-	sensor histidine kinase
1143	 46.17	0	1228096..1228866	-	256	15641170	-	VC1157	-	response regulator
1144	 47.24	0	1229089..1230354	+	421	15641171	-	VC1158	-	hypothetical protein
1145	 48.77	0	1230431..1231570	+	379	15641172	-	VC1159	-	phosphoserine aminotransferase
1146	 51.11	0	1231651..1232640	-	329	15641173	-	VC1160	-	hypothetical protein
1147	 49.11	0	1232640..1234148	-	502	15641174	-	VC1161	-	gonadoliberin III-related protein
1148	 49.05	0	1234157..1234894	-	245	15641175	-	VC1162	-	hypothetical protein
1149	 50.62	0	1235014..1235985	-	323	15641176	-	VC1163	-	hypothetical protein
1150	 49.66	0	1236097..1236837	-	246	15641177	-	VC1164	-	hypothetical protein
1151	 51.95	+1	1236963..1237832	-	289	15641178	-	VC1165	-	hypothetical protein
1152	 50.17	0	1238124..1239899	+	591	15641179	aspS	VC1166	-	aspartyl-tRNA synthetase
1153	 48.88	0	1239996..1240574	+	192	15641180	-	VC1167	-	thymidine kinase
1154	 48.37	0	1240676..1242052	-	458	15641181	-	VC1168	-	proton/glutamate symporter
1155	 51.55	0	1242248..1243054	-	268	15641182	trpA	VC1169	-	tryptophan synthase subunit alpha
1156	 50.46	0	1243054..1244244	-	396	15641183	-	VC1170	-	tryptophan synthase subunit beta
1157	 49.86	0	1244285..1245694	-	469	15641184	-	VC1171	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
1158	 52.15	+1	1245700..1246698	-	332	161582011	trpD	VC1172	-	anthranilate phosphoribosyltransferase
1159	 52.78	+1	1246719..1247330	-	203	15641186	-	VC1173	-	anthranilate synthase component II
1160	 51.34	0	1247327..1248898	-	523	15641187	-	VC1174	-	anthranilate synthase component I
1161	 43.01	-1	1248908..1249000	-	30	15641188	-	VC1175	-	hypothetical protein
1162	 45.65	0	1249032..1249169	-	45	15641189	-	VC1176	-	hypothetical protein
1163	 49.48	0	1249234..1250106	+	290	15641190	-	VC1177	-	hypothetical protein
1164	 50.40	0	1250109..1250729	+	206	15641191	-	VC1178	-	hypothetical protein
1165	 51.86	+1	1250862..1251827	+	321	15641192	-	VC1179	-	pseudouridine synthase family 1 protein
1166	 51.80	+1	1251995..1253716	-	573	15641193	-	VC1180	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1167	 50.78	0	1253709..1255496	-	595	15641194	-	VC1181	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1168	 50.47	0	1255616..1256572	-	318	15641195	-	VC1182	-	thioredoxin reductase
1169	 48.18	0	1257047..1257706	+	219	15641196	-	VC1183	-	hypothetical protein
1170	 51.64	0	1257681..1258931	+	416	15641197	-	VC1184	-	NifS-related protein
1171	 49.02	0	1259189..1260520	+	443	15641198	-	VC1185	-	GGDEF family protein
1172	 48.50	0	1260621..1261385	-	254	15641199	-	VC1186	-	sanA protein
1173	 47.97	0	1261358..1261726	-	122	15641200	-	VC1187	-	hypothetical protein
1174	 50.37	0	1261730..1263496	-	588	15641201	-	VC1188	-	malate dehydrogenase
1175	 44.68	0	1263812..1264234	+	140	15641202	-	VC1189	-	hypothetical protein
1176	 46.88	0	1264436..1265653	-	405	15641203	hemH	VC1190	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1177	 47.37	0	1265708..1266106	-	132	15641204	-	VC1191	-	hypothetical protein
1178	 26.85	-2	1266153..1266260	+	35	15641205	-	VC1192	-	hypothetical protein
1179	 40.91	-1	1266398..1266595	-	65	15641206	-	VC1193	-	hypothetical protein
1180	 46.82	0	1266731..1267783	-	350	15641207	-	VC1194	-	hypothetical protein
1181	 50.74	0	1267848..1268519	-	223	15641208	-	VC1195	-	putative lipoprotein
1182	 44.78	0	1268619..1269308	-	229	15641209	-	VC1196	-	hypothetical protein
1183	 44.40	0	1269433..1270128	-	231	15641210	-	VC1197	-	hypothetical protein
1184	 48.92	0	1270299..1273364	+	1021	15641211	-	VC1198	-	hypothetical protein
1185	 48.29	0	1273414..1273881	+	155	15641212	-	VC1199	-	hypothetical protein
1186	 44.80	0	1274131..1275342	+	403	15641213	-	VC1200	-	trypsin, putative
1187	 48.07	0	1275417..1276142	-	241	15641214	-	VC1201	-	hypothetical protein
1188	 53.32	+1	1276291..1277826	-	511	15641215	hutH	VC1202	-	histidine ammonia-lyase
1189	 53.89	+1	1277838..1279535	-	565	15641216	-	VC1203	-	urocanate hydratase
1190	 52.52	+1	1279554..1280564	-	336	15641217	-	VC1204	-	formimidoylglutamase
1191	 53.02	+1	1280554..1281762	-	402	15641218	-	VC1205	-	imidazolonepropionase
1192	 49.93	0	1281866..1282576	-	236	15641219	-	VC1206	-	histidine utilization repressor
1193	 48.63	0	1282693..1283640	-	315	15641220	-	VC1207	-	hypothetical protein
1194	 49.53	0	1283779..1284099	-	106	15641221	-	VC1208	-	dsDNA-mimic protein
1195	 44.62	0	1284104..1284670	-	188	161582010	-	VC1209	-	elongation factor P
1196	 49.81	0	1284862..1285656	+	264	15641223	-	VC1210	-	hypothetical protein
1197	 45.25	0	1285750..1287864	+	704	15641224	-	VC1211	-	hypothetical protein
1198	 48.18	0	1287836..1290199	-	787	15641225	-	VC1212	-	DNA polymerase II
1199	 47.60	0	1290575..1291219	+	214	15641226	-	VC1213	-	response regulator
1200	 49.21	0	1291219..1293051	+	610	15641227	uvrC	VC1214	-	excinuclease ABC subunit C
1201	 47.31	0	1293099..1293656	+	185	15641228	-	VC1215	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1202	 47.54	0	1294549..1295667	+	372	15641229	-	VC1216	-	GGDEF family protein
1203	 50.62	0	1295664..1296149	-	161	15641230	-	VC1217	-	hypothetical protein
1204	 45.30	0	1296292..1296408	+	38	15641231	-	VC1218	-	hypothetical protein
1205	 50.20	0	1296440..1297423	+	327	15641232	pheS	VC1219	-	phenylalanyl-tRNA synthetase subunit alpha
1206	 52.18	+1	1297450..1299837	+	795	15641233	pheT	VC1220	-	phenylalanyl-tRNA synthetase subunit beta
1207	 40.74	-1	1300120..1300254	+	44	15641234	-	VC1221	-	hypothetical protein
1208	 47.14	0	1300276..1300572	+	98	15641235	ihfA	VC1222	-	integration host factor subunit alpha
1209	 48.10	0	1300556..1300792	-	78	15641236	-	VC1223	-	hypothetical protein
1210	 47.56	0	1300701..1301480	-	259	15641237	-	VC1224	-	hypothetical protein
1211	 39.84	-1	1301552..1301797	+	81	15641238	-	VC1225	-	hypothetical protein
1212	 49.62	0	1301949..1302605	+	218	15641239	-	VC1226	-	thiopurine S-methyltransferase
1213	 43.27	0	1302558..1302728	-	56	15641240	-	VC1227	-	hypothetical protein
1214	 51.69	+1	1302698..1303879	-	393	15641241	purT	VC1228	-	phosphoribosylglycinamide formyltransferase 2
1215	 49.20	0	1304027..1304902	-	291	15641242	-	VC1229	-	hypothetical protein
1216	 45.83	0	1304979..1305098	+	39	15641243	-	VC1230	-	hypothetical protein
1217	 50.56	0	1305061..1305948	-	295	15641244	-	VC1231	-	cytidine deaminase
1218	 51.41	0	1306118..1306792	-	224	15641245	-	VC1232	-	hypothetical protein
1219	 47.44	0	1306783..1307172	-	129	15641246	-	VC1233	-	hypothetical protein
1220	 50.81	0	1307189..1308613	-	474	15641247	sbcB	VC1234	-	exonuclease I
1221	 50.42	0	1308759..1310174	-	471	15641248	-	VC1235	-	sodium/dicarboxylate symporter
1222	 49.44	0	1310478..1310924	+	148	15641249	-	VC1236	-	PilB-related protein
1223	 52.43	+1	1311451..1312560	+	369	15641250	cobT	VC1237	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1224	 50.00	0	1312560..1313345	+	261	15641251	cobS	VC1238	-	cobalamin synthase
1225	 52.22	+1	1313354..1313893	+	179	15641252	cobU	VC1239	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1226	 52.07	+1	1313900..1314502	+	200	15641253	-	VC1240	-	alpha-ribazole-5`-phosphate phosphatase CobC, putative
1227	 48.15	0	1314660..1314767	+	35	15641254	-	VC1241	-	hypothetical protein
1228	 49.47	0	1314818..1315846	+	342	15641255	-	VC1242	-	succinylglutamate desuccinylase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.