IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1072	 44.75	0	1152625..1154235	+	536	15641099	-	VC1086	-	response regulator
1073	 46.06	0	1154252..1155595	+	447	15641100	-	VC1087	-	response regulator
1074	 45.42	0	1155624..1157228	-	534	15641101	-	VC1088	-	sensor histidine kinase
1075	 46.86	0	1157232..1158044	-	270	15641102	-	VC1089	-	periplasmic binding protein-related protein
1076	 34.72	-2	1158069..1158212	-	47	15641103	-	VC1090	-	hypothetical protein
1077	 46.20	0	1158668..1160299	+	543	15641104	-	VC1091	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
1078	 46.47	0	1160448..1161368	+	306	15641105	oppB	VC1092	-	oligopeptide transporter permease
1079	 49.72	0	1161382..1162284	+	300	15641106	-	VC1093	-	oligopeptide ABC transporter, permease protein
1080	 49.95	0	1162309..1163283	+	324	15641107	oppD	VC1094	-	oligopeptide transporter ATP-binding component
1081	 48.27	0	1163262..1164272	+	336	15641108	-	VC1095	-	oligopeptide ABC transporter, ATP-binding protein
1082	 47.26	0	1164422..1165369	+	315	15641109	-	VC1096	-	hypothetical protein
1083	 51.79	+1	1165467..1167611	-	714	15641110	-	VC1097	-	phosphate acetyltransferase
1084	 50.54	0	1167747..1168943	-	398	15641111	-	VC1098	-	acetate kinase
1085	 49.89	0	1169290..1169748	+	152	15641112	-	VC1099	-	hypothetical protein
1086	 44.53	0	1169871..1170281	-	136	15641113	-	VC1100	-	hypothetical protein
1087	 48.55	0	1170719..1171684	+	321	15641114	-	VC1101	-	hypothetical protein
1088	 50.30	0	1171760..1172743	+	327	15641115	-	VC1102	-	ABC transporter, permease protein, putative
1089	 50.44	0	1172740..1173534	+	264	15641116	-	VC1103	-	ABC transporter, ATP-binding protein
1090	 44.76	0	1173701..1175170	+	489	15641117	-	VC1104	-	GGDEF family protein
1091	 50.93	0	1175203..1176174	-	323	15641118	-	VC1105	-	hypothetical protein
1092	 50.63	0	1176331..1176960	+	209	15641119	-	VC1106	-	preprotein translocase SecA subunit-related protein
1093	 47.07	0	1177056..1177652	+	198	15641120	lolA	VC1107	-	outer-membrane lipoprotein carrier protein
1094	 52.44	+1	1177677..1179026	+	449	15641121	-	VC1108	-	recombination factor protein RarA
1095	 44.79	0	1179026..1179121	+	31	15641122	-	VC1109	-	hypothetical protein
1096	 49.46	0	1179130..1180437	+	435	15641123	-	VC1110	-	seryl-tRNA synthetase
1097	 50.97	0	1180544..1181830	-	428	15641124	-	VC1111	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1098	 51.09	0	1181957..1183009	+	350	15641125	-	VC1112	-	biotin synthase
1099	 52.47	+1	1182993..1184147	+	384	15641126	-	VC1113	-	8-amino-7-oxononanoate synthase
1100	 50.59	0	1184009..1184947	+	312	15641127	-	VC1114	-	biotin synthesis protein BioC
1101	 47.98	0	1184923..1185639	+	238	15641128	bioD	VC1115	-	dithiobiotin synthetase
1102	 43.33	0	1185721..1185930	-	69	15641129	-	VC1116	-	hypothetical protein
1103	 49.42	0	1186157..1187020	+	287	15641130	-	VC1117	-	heat shock protein HtpX
1104	 45.45	0	1187230..1187658	+	142	15641131	-	VC1118	-	transcriptional regulator, putative
1105	 51.10	0	1187655..1188380	+	241	15641132	-	VC1119	-	short chain dehydrogenase
1106	 48.71	0	1188391..1189671	+	426	15641133	-	VC1120	-	hypothetical protein
1107	 48.27	0	1189671..1190480	+	269	15641134	-	VC1121	-	hypothetical protein
1108	 47.27	0	1190413..1191711	+	432	15641135	-	VC1122	-	cyclopropane-fatty-acyl-phospholipid synthase
1109	 48.89	0	1191714..1192253	+	179	15641136	-	VC1123	-	hypothetical protein
1110	 50.97	0	1192186..1192752	+	188	15641137	-	VC1124	-	hypothetical protein
1111	 45.45	0	1192749..1193276	+	175	15641138	-	VC1125	-	hypothetical protein
1112	 49.53	0	1193367..1194737	-	456	15641139	-	VC1126	-	adenylosuccinate lyase
1113	 50.00	0	1194795..1195412	-	205	15641140	-	VC1127	-	hypothetical protein
1114	 47.63	0	1195435..1196553	-	372	15641141	trmU	VC1128	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1115	 42.91	-1	1196815..1198119	+	434	15641142	-	VC1129	-	inosine-guanosine kinase
1116	 43.24	0	1198167..1198580	-	137	15641143	-	VC1130	-	DNA-binding protein H-NS
1117	 48.00	0	1199268..1200869	+	533	15641144	-	VC1131	-	hypothetical protein
1118	 49.18	0	1201260..1202174	+	304	15641145	hisG	VC1132	-	ATP phosphoribosyltransferase
1119	 51.70	+1	1202179..1203474	+	431	15641146	hisD	VC1133	-	histidinol dehydrogenase
1120	 49.38	0	1203478..1204518	+	346	15641147	-	VC1134	-	histidinol-phosphate aminotransferase
1121	 49.81	0	1204570..1205643	+	357	15641148	-	VC1135	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1122	 50.65	0	1205643..1206254	+	203	15641149	hisH	VC1136	-	imidazole glycerol phosphate synthase subunit HisH
1123	 50.14	0	1206297..1207034	+	245	15641150	-	VC1137	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1124	 51.03	0	1207016..1207789	+	257	15641151	-	VC1138	-	imidazole glycerol phosphate synthase subunit HisF
1125	 49.76	0	1207786..1208418	+	210	15641152	-	VC1139	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1126	 47.65	0	1208619..1209491	-	290	15641153	-	VC1140	-	pseudouridine synthase family 1 protein
1127	 49.15	0	1209652..1211877	+	741	15641154	-	VC1141	-	isocitrate dehydrogenase
1128	 45.89	0	1211976..1212206	-	76	15641155	-	VC1142	-	cold shock-like protein CspD
1129	 42.37	-1	1212670..1212990	+	106	15641156	clpS	VC1143	-	ATP-dependent Clp protease adaptor protein ClpS
1130	 48.66	0	1213029..1215299	+	756	15641157	clpA	VC1144	-	ATP-dependent Clp protease ATP-binding subunit
1131	 47.35	0	1215368..1217044	-	558	15641158	-	VC1145	-	hypothetical protein
1132	 44.70	0	1217246..1217509	-	87	161582012	grxA	VC1146	-	glutaredoxin 1
1133	 51.69	+1	1217797..1219065	+	422	15641160	-	VC1147	-	iron-containing alcohol dehydrogenase
1134	 46.32	0	1219156..1220010	-	284	15641161	-	VC1148	-	DNA-binding transcriptional regulator HexR
1135	 48.27	0	1220318..1221964	-	548	15641162	-	VC1149	-	glutamate decarboxylase, putative
1136	 46.04	0	1222074..1222679	-	201	15641163	-	VC1150	-	hypothetical protein
1137	 48.23	0	1222772..1223677	-	301	15641164	-	VC1151	-	hypothetical protein
1138	 44.12	0	1223698..1224633	-	311	15641165	-	VC1152	-	hypothetical protein
1139	 45.81	0	1224975..1225583	+	202	15641166	-	VC1153	-	hypothetical protein
1140	 50.82	0	1225679..1226227	-	182	15641167	-	VC1154	-	hypothetical protein
1141	 47.44	0	1226418..1226963	-	181	15641168	-	VC1155	-	response regulator
1142	 46.53	0	1226912..1228207	-	431	15641169	-	VC1156	-	sensor histidine kinase
1143	 46.17	0	1228096..1228866	-	256	15641170	-	VC1157	-	response regulator
1144	 47.24	0	1229089..1230354	+	421	15641171	-	VC1158	-	hypothetical protein
1145	 48.77	0	1230431..1231570	+	379	15641172	-	VC1159	-	phosphoserine aminotransferase
1146	 51.11	0	1231651..1232640	-	329	15641173	-	VC1160	-	hypothetical protein
1147	 49.11	0	1232640..1234148	-	502	15641174	-	VC1161	-	gonadoliberin III-related protein
1148	 49.05	0	1234157..1234894	-	245	15641175	-	VC1162	-	hypothetical protein
1149	 50.62	0	1235014..1235985	-	323	15641176	-	VC1163	-	hypothetical protein
1150	 49.66	0	1236097..1236837	-	246	15641177	-	VC1164	-	hypothetical protein
1151	 51.95	+1	1236963..1237832	-	289	15641178	-	VC1165	-	hypothetical protein
1152	 50.17	0	1238124..1239899	+	591	15641179	aspS	VC1166	-	aspartyl-tRNA synthetase
1153	 48.88	0	1239996..1240574	+	192	15641180	-	VC1167	-	thymidine kinase
1154	 48.37	0	1240676..1242052	-	458	15641181	-	VC1168	-	proton/glutamate symporter
1155	 51.55	0	1242248..1243054	-	268	15641182	trpA	VC1169	-	tryptophan synthase subunit alpha
1156	 50.46	0	1243054..1244244	-	396	15641183	-	VC1170	-	tryptophan synthase subunit beta
1157	 49.86	0	1244285..1245694	-	469	15641184	-	VC1171	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
1158	 52.15	+1	1245700..1246698	-	332	161582011	trpD	VC1172	-	anthranilate phosphoribosyltransferase
1159	 52.78	+1	1246719..1247330	-	203	15641186	-	VC1173	-	anthranilate synthase component II
1160	 51.34	0	1247327..1248898	-	523	15641187	-	VC1174	-	anthranilate synthase component I
1161	 43.01	-1	1248908..1249000	-	30	15641188	-	VC1175	-	hypothetical protein
1162	 45.65	0	1249032..1249169	-	45	15641189	-	VC1176	-	hypothetical protein
1163	 49.48	0	1249234..1250106	+	290	15641190	-	VC1177	-	hypothetical protein
1164	 50.40	0	1250109..1250729	+	206	15641191	-	VC1178	-	hypothetical protein
1165	 51.86	+1	1250862..1251827	+	321	15641192	-	VC1179	-	pseudouridine synthase family 1 protein
1166	 51.80	+1	1251995..1253716	-	573	15641193	-	VC1180	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1167	 50.78	0	1253709..1255496	-	595	15641194	-	VC1181	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
1168	 50.47	0	1255616..1256572	-	318	15641195	-	VC1182	-	thioredoxin reductase
1169	 48.18	0	1257047..1257706	+	219	15641196	-	VC1183	-	hypothetical protein
1170	 51.64	0	1257681..1258931	+	416	15641197	-	VC1184	-	NifS-related protein
1171	 49.02	0	1259189..1260520	+	443	15641198	-	VC1185	-	GGDEF family protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.