IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1020	 52.51	+1	1100393..1101169	+	258	15641047	-	VC1034	-	uridine phosphorylase
1021	 46.42	0	1101242..1102135	-	297	15641048	-	VC1035	-	hypothetical protein
1022	 49.03	0	1102361..1104412	-	683	161582014	metG	VC1036	-	methionyl-tRNA synthetase
1023	 51.78	+1	1104498..1105646	+	382	15641050	-	VC1037	-	mrp protein
1024	 48.94	0	1105805..1106464	+	219	15641051	-	VC1038	-	uridine kinase
1025	 47.63	0	1106562..1108673	+	703	15641052	-	VC1039	-	asmA protein
1026	 49.34	0	1108745..1109350	-	201	15641053	-	VC1040	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1027	 49.15	0	1109436..1109903	+	155	15641054	-	VC1041	-	phosphotyrosine protein phosphatase
1028	 47.81	0	1109930..1111228	-	432	15641055	-	VC1042	-	long-chain fatty acid transport protein
1029	 45.69	0	1111531..1112817	-	428	15641056	-	VC1043	-	long-chain fatty acid transport protein
1030	 47.38	0	1113077..1113838	-	253	15641057	-	VC1044	-	hypothetical protein
1031	 44.44	0	1113801..1114367	-	188	15641058	-	VC1045	-	RNA polymerase sigma factor
1032	 49.21	0	1114748..1116202	+	484	15641059	fadI	VC1046	-	3-ketoacyl-CoA thiolase
1033	 49.74	0	1116202..1118328	+	708	161582013	fadJ	VC1047	-	multifunctional fatty acid oxidation complex subunit alpha
1034	 50.82	0	1118454..1119002	+	182	15641061	-	VC1048	-	hypothetical protein
1035	 47.00	0	1119081..1119980	-	299	15641062	-	VC1049	-	LysR family transcriptional regulator
1036	 45.80	0	1120189..1121295	+	368	15641063	-	VC1050	-	response regulator
1037	 43.94	0	1121465..1121596	+	43	15641064	-	VC1051	-	hypothetical protein
1038	 45.61	0	1121596..1121994	+	132	15641065	-	VC1052	-	hypothetical protein
1039	 48.90	0	1122126..1122671	+	181	15641066	-	VC1053	-	adenine phosphoribosyltransferase
1040	 51.56	0	1122690..1124768	+	692	15641067	-	VC1054	-	DNA polymerase III subunits gamma and tau
1041	 48.76	0	1124806..1125168	+	120	15641068	-	VC1055	-	hypothetical protein
1042	 52.57	+1	1125183..1125785	+	200	15641069	recR	VC1056	-	recombination protein RecR
1043	 50.79	0	1125895..1126146	-	83	15641070	-	VC1057	-	proteinase inhibitor, putative
1044	 47.03	0	1126281..1126718	+	145	15641071	-	VC1058	-	hypothetical protein
1045	 48.39	0	1126812..1127555	-	247	15641072	-	VC1059	-	short chain dehydrogenase
1046	 49.02	0	1127705..1128775	+	356	15641073	-	VC1060	-	putative periplasmic protease
1047	 50.00	0	1128900..1129967	-	355	15641074	-	VC1061	-	cysteine synthase/cystathionine beta-synthase family protein
1048	 44.51	0	1130011..1130547	+	178	15641075	-	VC1062	-	AsnC family transcriptional regulator
1049	 48.66	0	1130556..1131416	-	286	15641076	-	VC1063	-	acyl-CoA thioesterase II
1050	 45.83	0	1131567..1131998	+	143	15641077	-	VC1064	-	lipoprotein-related protein
1051	 48.84	0	1132052..1132354	-	100	15641078	-	VC1065	-	methylated-DNA--protein-cysteine methyltransferase-related protein
1052	 48.92	0	1132405..1133148	+	247	15641079	-	VC1066	-	hypothetical protein
1053	 45.24	0	1133235..1135316	+	693	15641080	-	VC1067	-	hypothetical protein
1054	 51.75	+1	1135858..1136199	+	113	15641081	-	VC1068	-	ArsR family transcriptional regulator
1055	 48.00	0	1136296..1137297	+	333	15641082	-	VC1069	-	glyceraldehyde-3-phosphate dehydrogenase
1056	 54.22	+1	1137311..1137808	+	165	15641083	-	VC1070	-	phosphatase, putative
1057	 50.73	0	1137847..1139082	+	411	15641084	-	VC1071	-	transporter, putative
1058	 31.94	-2	1139201..1139344	+	47	15641085	-	VC1072	-	hypothetical protein
1059	 50.81	0	1139646..1142912	+	1088	15641086	-	VC1073	-	chitinase, putative
1060	 50.18	0	1143002..1143832	-	276	15641087	-	VC1074	-	hypothetical protein
1061	 50.64	0	1144116..1144658	+	180	15641088	-	VC1075	-	hypothetical protein
1062	 47.26	0	1144671..1145510	+	279	15641089	-	VC1076	-	AraC/XylS family transcriptional regulator
1063	 45.40	0	1145507..1145995	-	162	15641090	-	VC1077	-	hypothetical protein
1064	 41.84	-1	1146074..1146214	-	46	15641091	-	VC1078	-	hypothetical protein
1065	 54.14	+1	1146259..1147248	-	329	15641092	-	VC1079	-	hypothetical protein
1066	 47.54	0	1147494..1147859	+	121	15641093	-	VC1080	-	hypothetical protein
1067	 46.37	0	1147856..1148998	+	380	15641094	-	VC1081	-	response regulator
1068	 47.54	0	1149033..1149398	+	121	15641095	-	VC1082	-	response regulator
1069	 44.27	0	1149395..1149979	+	194	15641096	-	VC1083	-	hypothetical protein
1070	 45.00	0	1149990..1151309	+	439	15641097	-	VC1084	-	sensory box sensor histidine kinase
1071	 46.59	0	1151321..1152625	+	434	15641098	-	VC1085	-	sensor histidine kinase
1072	 44.75	0	1152625..1154235	+	536	15641099	-	VC1086	-	response regulator
1073	 46.06	0	1154252..1155595	+	447	15641100	-	VC1087	-	response regulator
1074	 45.42	0	1155624..1157228	-	534	15641101	-	VC1088	-	sensor histidine kinase
1075	 46.86	0	1157232..1158044	-	270	15641102	-	VC1089	-	periplasmic binding protein-related protein
1076	 34.72	-2	1158069..1158212	-	47	15641103	-	VC1090	-	hypothetical protein
1077	 46.20	0	1158668..1160299	+	543	15641104	-	VC1091	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
1078	 46.47	0	1160448..1161368	+	306	15641105	oppB	VC1092	-	oligopeptide transporter permease
1079	 49.72	0	1161382..1162284	+	300	15641106	-	VC1093	-	oligopeptide ABC transporter, permease protein
1080	 49.95	0	1162309..1163283	+	324	15641107	oppD	VC1094	-	oligopeptide transporter ATP-binding component
1081	 48.27	0	1163262..1164272	+	336	15641108	-	VC1095	-	oligopeptide ABC transporter, ATP-binding protein
1082	 47.26	0	1164422..1165369	+	315	15641109	-	VC1096	-	hypothetical protein
1083	 51.79	+1	1165467..1167611	-	714	15641110	-	VC1097	-	phosphate acetyltransferase
1084	 50.54	0	1167747..1168943	-	398	15641111	-	VC1098	-	acetate kinase
1085	 49.89	0	1169290..1169748	+	152	15641112	-	VC1099	-	hypothetical protein
1086	 44.53	0	1169871..1170281	-	136	15641113	-	VC1100	-	hypothetical protein
1087	 48.55	0	1170719..1171684	+	321	15641114	-	VC1101	-	hypothetical protein
1088	 50.30	0	1171760..1172743	+	327	15641115	-	VC1102	-	ABC transporter, permease protein, putative
1089	 50.44	0	1172740..1173534	+	264	15641116	-	VC1103	-	ABC transporter, ATP-binding protein
1090	 44.76	0	1173701..1175170	+	489	15641117	-	VC1104	-	GGDEF family protein
1091	 50.93	0	1175203..1176174	-	323	15641118	-	VC1105	-	hypothetical protein
1092	 50.63	0	1176331..1176960	+	209	15641119	-	VC1106	-	preprotein translocase SecA subunit-related protein
1093	 47.07	0	1177056..1177652	+	198	15641120	lolA	VC1107	-	outer-membrane lipoprotein carrier protein
1094	 52.44	+1	1177677..1179026	+	449	15641121	-	VC1108	-	recombination factor protein RarA
1095	 44.79	0	1179026..1179121	+	31	15641122	-	VC1109	-	hypothetical protein
1096	 49.46	0	1179130..1180437	+	435	15641123	-	VC1110	-	seryl-tRNA synthetase
1097	 50.97	0	1180544..1181830	-	428	15641124	-	VC1111	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1098	 51.09	0	1181957..1183009	+	350	15641125	-	VC1112	-	biotin synthase
1099	 52.47	+1	1182993..1184147	+	384	15641126	-	VC1113	-	8-amino-7-oxononanoate synthase
1100	 50.59	0	1184009..1184947	+	312	15641127	-	VC1114	-	biotin synthesis protein BioC
1101	 47.98	0	1184923..1185639	+	238	15641128	bioD	VC1115	-	dithiobiotin synthetase
1102	 43.33	0	1185721..1185930	-	69	15641129	-	VC1116	-	hypothetical protein
1103	 49.42	0	1186157..1187020	+	287	15641130	-	VC1117	-	heat shock protein HtpX
1104	 45.45	0	1187230..1187658	+	142	15641131	-	VC1118	-	transcriptional regulator, putative
1105	 51.10	0	1187655..1188380	+	241	15641132	-	VC1119	-	short chain dehydrogenase
1106	 48.71	0	1188391..1189671	+	426	15641133	-	VC1120	-	hypothetical protein
1107	 48.27	0	1189671..1190480	+	269	15641134	-	VC1121	-	hypothetical protein
1108	 47.27	0	1190413..1191711	+	432	15641135	-	VC1122	-	cyclopropane-fatty-acyl-phospholipid synthase
1109	 48.89	0	1191714..1192253	+	179	15641136	-	VC1123	-	hypothetical protein
1110	 50.97	0	1192186..1192752	+	188	15641137	-	VC1124	-	hypothetical protein
1111	 45.45	0	1192749..1193276	+	175	15641138	-	VC1125	-	hypothetical protein
1112	 49.53	0	1193367..1194737	-	456	15641139	-	VC1126	-	adenylosuccinate lyase
1113	 50.00	0	1194795..1195412	-	205	15641140	-	VC1127	-	hypothetical protein
1114	 47.63	0	1195435..1196553	-	372	15641141	trmU	VC1128	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1115	 42.91	-1	1196815..1198119	+	434	15641142	-	VC1129	-	inosine-guanosine kinase
1116	 43.24	0	1198167..1198580	-	137	15641143	-	VC1130	-	DNA-binding protein H-NS
1117	 48.00	0	1199268..1200869	+	533	15641144	-	VC1131	-	hypothetical protein
1118	 49.18	0	1201260..1202174	+	304	15641145	hisG	VC1132	-	ATP phosphoribosyltransferase
1119	 51.70	+1	1202179..1203474	+	431	15641146	hisD	VC1133	-	histidinol dehydrogenase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.