IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.90	-2	235..402	-	55	15640033	-	VC0001	-	hypothetical protein
2	 50.11	0	372..806	-	144	15640034	-	VC0002	-	flavodoxin
3	 52.47	+1	816..2210	-	464	15640035	trmE	VC0003	-	tRNA modification GTPase TrmE
4	 49.20	0	2271..3896	-	541	15640036	-	VC0004	-	putative inner membrane protein translocase component YidC
5	 46.51	0	3899..4156	-	85	15640037	-	VC0005	-	hypothetical protein
6	 44.82	0	4123..4479	-	118	15640038	rnpA	VC0006	-	ribonuclease P
7	 50.00	0	4492..4629	-	45	15640039	rpmH	VC0007	-	50S ribosomal protein L34
8	 49.46	0	4871..5608	-	245	15640040	-	VC0008	-	amino acid ABC transporter, ATP-binding protein
9	 50.30	0	5605..6276	-	223	15640041	-	VC0009	-	amino acid ABC transproter, permease protein
10	 47.52	0	6354..7100	-	248	15640042	-	VC0010	-	amino acid ABC transporter, periplasmic amino acid-binding portion
11	 41.86	-1	7224..7352	+	42	15640043	-	VC0011	-	hypothetical protein
12	 50.67	0	7397..8815	+	472	15640044	dnaA	VC0012	-	chromosomal replication initiation protein
13	 49.77	0	8873..9973	+	366	15640045	-	VC0013	-	DNA polymerase III subunit beta
14	 47.53	0	9991..11082	+	363	15640046	recF	VC0014	-	recombination protein F
15	 50.50	0	11103..13520	+	805	15640047	gyrB	VC0015	-	DNA gyrase subunit B
16	 49.59	0	13876..14367	+	163	15640048	-	VC0016	-	hypothetical protein
17	 43.59	0	14377..14493	+	38	15640049	-	VC0017	-	hypothetical protein
18	 45.66	0	14769..15206	+	145	15640050	-	VC0018	-	16 kDa heat shock protein A
19	 49.88	0	15294..16550	-	418	15640051	avtA	VC0019	-	valine--pyruvate transaminase
20	 52.06	+1	16869..18935	-	688	15640052	glyS	VC0020	-	glycyl-tRNA synthetase subunit beta
21	 49.95	0	18950..19942	-	330	15640053	glyQ	VC0021	-	glycyl-tRNA synthetase subunit alpha
22	 47.10	0	20235..20837	+	200	15640054	-	VC0022	-	hypothetical protein
23	 47.67	0	20943..21200	+	85	15640055	-	VC0023	-	NADH dehydrogenase subunit II-related protein
24	 49.00	0	21287..21535	-	82	15640056	-	VC0024	-	cell developmental protein SirA
25	 46.27	0	21656..21856	+	66	15640057	-	VC0025	-	hypothetical protein
26	 52.09	+1	22028..23008	-	326	15640058	-	VC0026	-	zinc-binding alcohol dehydrogenase
27	 52.32	+1	23256..24788	-	510	15640059	-	VC0027	-	threonine dehydratase
28	 54.72	+1	24792..26633	-	613	15640060	-	VC0028	-	dihydroxy-acid dehydratase
29	 53.65	+1	26643..27602	-	319	15640061	-	VC0029	-	branched-chain amino acid aminotransferase
30	 45.61	0	27593..27877	-	94	15640062	ilvM	VC0030	-	acetolactate synthase 2 regulatory subunit
31	 55.31	+1	27889..29535	-	548	15640063	-	VC0031	-	acetolactate synthase 2 catalytic subunit
32	 53.61	+1	30069..31592	+	507	15640064	-	VC0032	-	ComM-related protein
33	 49.94	0	31682..32566	+	294	15640065	-	VC0033	-	hypothetical protein
34	 46.10	0	32644..33246	-	200	15640066	-	VC0034	-	thiol:disulfide interchange protein
35	 49.75	0	33277..34263	-	328	161582037	-	VC0035	-	serine/threonine protein kinase
36	 49.06	0	34311..35798	-	495	15640068	-	VC0036	-	FixG-related protein
37	 42.29	-1	36152..36430	-	92	15640069	-	VC0037	-	hypothetical protein
38	 52.38	+1	36527..36694	-	55	15640070	-	VC0038	-	hypothetical protein
39	 51.25	0	36928..37770	+	280	15640071	-	VC0039	-	SpoOM-related protein
40	 47.22	0	37848..38495	+	215	15640072	-	VC0040	-	hemolysin, putative
41	 50.08	0	38534..39190	-	218	15640073	-	VC0041	-	hypothetical protein
42	 51.31	0	39103..40548	-	481	15640074	-	VC0042	-	potassium uptake protein TrkH
43	 52.21	+1	40560..41936	-	458	15640075	trkA	VC0043	-	potassium transporter peripheral membrane component
44	 54.41	+1	41998..43302	-	434	15640076	-	VC0044	-	sun protein
45	 51.48	0	43334..44281	-	315	15640077	fmt	VC0045	-	methionyl-tRNA formyltransferase
46	 48.04	0	44299..44808	-	169	15640078	def	VC0046	-	peptide deformylase
47	 50.17	0	44900..46075	+	391	15640079	-	VC0047	-	hypothetical protein
48	 51.34	0	46075..47190	+	371	15640080	-	VC0048	-	smf protein
49	 46.54	0	47193..47669	+	158	15640081	-	VC0049	-	hypothetical protein
50	 49.04	0	47679..48251	+	190	15640082	-	VC0050	-	DNA topoisomerase I-related protein
51	 51.23	0	48324..49457	-	377	15640083	-	VC0051	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
52	 52.67	+1	49461..49946	-	161	15640084	-	VC0052	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
53	 43.65	0	49961..50086	+	41	15640085	-	VC0053	-	hypothetical protein
54	 53.62	+1	50104..50670	+	188	15640086	-	VC0054	-	Sua5/YciO/YrdC family protein
55	 49.89	0	50689..51606	+	305	15640087	-	VC0055	-	coproporphyrinogen III oxidase
56	 50.06	0	51668..52504	+	278	15640088	aroE	VC0056	-	shikimate 5-dehydrogenase
57	 44.93	0	52501..52776	+	91	15640089	-	VC0057	-	hypothetical protein
58	 47.75	0	52757..53311	-	184	15640090	-	VC0058	-	carbonic anhydrase
59	 40.43	-1	53497..53637	+	46	15640091	-	VC0059	-	hypothetical protein
60	 43.31	0	59356..59736	+	126	15640092	ccrB	VC0060	-	camphor resistance protein CrcB
61	 47.57	0	59988..61925	+	645	15640093	-	VC0061	-	thiamine biosynthesis protein ThiC
62	 46.41	0	61929..63251	+	440	15640094	thiE	VC0062	-	thiamine-phosphate pyrophosphorylase
63	 50.32	0	63238..64014	+	258	15640095	-	VC0063	-	thiF protein
64	 48.45	0	63957..64214	+	85	15640096	-	VC0064	-	sulfur carrier protein ThiS
65	 50.45	0	64220..64990	+	256	15640097	thiG	VC0065	-	thiazole synthase
66	 47.80	0	64987..66099	+	370	15640098	thiH	VC0066	-	thiamine biosynthesis protein ThiH
67	 50.56	0	66324..68117	-	597	15640099	-	VC0067	-	aminopeptidase P
68	 47.46	0	68250..69233	-	327	15640100	-	VC0068	-	LysR family transcriptional regulator
69	 50.12	0	69296..70498	+	400	15640101	-	VC0069	-	multidrug resistance protein, putative
70	 46.67	0	70602..70886	+	94	15640102	-	VC0070	-	hypothetical protein
71	 45.45	0	70975..71436	-	153	15640103	-	VC0071	-	DNA-binding transcriptional regulator AsnC
72	 50.11	0	71512..73818	+	768	15640104	-	VC0072	-	sensory box/GGDEF family protein
73	 52.22	+1	73785..74663	+	292	15640105	-	VC0073	-	hypothetical protein
74	 50.77	0	74781..75170	+	129	15640106	-	VC0074	-	hypothetical protein
75	 48.31	0	75266..76153	-	295	15640107	-	VC0075	-	MadN protein
76	 48.59	0	76210..76635	-	141	15640108	-	VC0076	-	universal stress protein A
77	 43.75	0	76681..76776	+	31	15640109	-	VC0077	-	hypothetical protein
78	 44.51	0	76782..77327	+	181	15640110	-	VC0078	-	ferritin
79	 47.53	0	77403..77726	+	107	15640111	-	VC0079	-	universal stress protein UspB
80	 51.96	+1	77859..79055	+	398	15640112	-	VC0080	-	hypothetical protein
81	 50.66	0	79052..79963	-	303	15640113	-	VC0081	-	hypothetical protein
82	 50.58	0	80077..81618	+	513	15640114	-	VC0082	-	hypothetical protein
83	 49.55	0	81663..82445	+	260	15640115	ubiE	VC0083	-	ubiquinone/menaquinone biosynthesis methyltransferase
84	 50.80	0	82454..83077	+	207	15640116	-	VC0084	-	hypothetical protein
85	 49.17	0	83074..84708	+	544	15640117	ubiB	VC0085	-	putative ubiquinone biosynthesis protein UbiB
86	 44.58	0	84768..85016	+	82	15640118	tatA	VC0086	-	twin argininte translocase protein A
87	 52.99	+1	85020..85421	+	133	15640119	-	VC0087	-	sec-independent translocase
88	 48.47	0	85510..86262	+	250	15640120	-	VC0088	-	hypothetical protein
89	 47.70	0	86574..87575	+	333	15640121	-	VC0089	-	cytochrome c551 peroxidase
90	 51.28	0	87681..89045	-	454	15640122	-	VC0090	-	DNA-damage-inducible protein F
91	 50.34	0	89116..89985	-	289	15640123	-	VC0091	-	O-methyltransferase-related protein
92	 52.70	+1	90013..90642	-	209	15640124	-	VC0092	-	LexA repressor
93	 51.79	+1	90962..93388	+	808	161582036	-	VC0093	-	glycerol-3-phosphate acyltransferase
94	 49.59	0	93464..94318	-	284	15640126	ubiA	VC0094	-	4-hydroxybenzoate octaprenyltransferase
95	 46.74	0	94319..94870	-	183	15640127	-	VC0095	-	chorismate--pyruvate lyase
96	 39.39	-1	94893..94991	-	32	15640128	-	VC0096	-	hypothetical protein
97	 45.74	0	95062..95472	+	136	15640129	-	VC0097	-	flagellar basal body-associated protein FliL-like protein
98	 51.67	0	95592..97571	-	659	15640130	-	VC0098	-	methyl-accepting chemotaxis protein
99	 48.32	0	97946..98779	-	277	15640131	-	VC0099	-	glpG protein
100	 46.11	0	98786..99106	-	106	15640132	glpE	VC0100	-	thiosulfate sulfurtransferase
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.