IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
929	 56.34	0	1026165..1026629	-	154	189026165	-	TPASS_0942	-	hypothetical protein
930	 51.23	0	1026635..1027081	-	148	189026166	fliS	TPASS_0943	-	flagellar protein
931	 53.20	0	1027130..1028302	-	390	189026167	-	TPASS_0944	-	hypothetical protein
932	 54.34	0	1028473..1029129	-	218	189026168	cfxE	TPASS_0945	-	ribulose-phosphate 3-epimerase
933	 57.25	+1	1029281..1029949	+	222	189026169	gidB	TPASS_0946	-	glucose-inhibited division protein B
934	 52.47	0	1029994..1030641	-	215	189026170	cyp	TPASS_0947	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-binding
935	 51.44	0	1030638..1031333	-	231	189026171	jag	TPASS_0948	-	spoIIIJ-associated protein
936	 51.30	0	1031349..1033346	-	665	189026172	-	TPASS_0949	-	membrane protein
937	 55.79	0	1033622..1033906	-	94	189026173	-	TPASS_0950	-	hypothetical protein
938	 59.62	+1	1033910..1034065	-	51	189026174	rpmH	TPASS_0951	-	ribosomal protein L34
939	 48.94	0	1034185..1035222	-	345	189026175	-	TPASS_0952	-	possible lipase
940	 56.09	0	1035304..1036494	-	396	189026176	traB	TPASS_0953	-	pheromone shutdown protein
941	 53.38	0	1036581..1038017	-	478	189026177	-	TPASS_0954	-	hypothetical protein
942	 53.85	0	1038089..1038361	-	90	189026178	-	TPASS_0955	-	hypothetical protein
943	 56.07	0	1038457..1039428	+	323	189026179	-	TPASS_0956	-	hypothetical protein
944	 50.15	0	1039519..1040547	+	342	189026180	tp33	TPASS_0957	-	protein Tp33
945	 52.66	0	1040579..1042477	+	632	189026181	dctM	TPASS_0958	-	dicarboxylate transporter
946	 54.36	0	1042546..1042935	-	129	189026182	-	TPASS_0959	-	hypothetical protein
947	 52.96	0	1042947..1043741	-	264	189026183	flgG1	TPASS_0960	-	flagellar basal-body rod protein
948	 47.18	-1	1043817..1044632	-	271	189026184	flgG2	TPASS_0961	-	flagellar basal-body rod protein
949	 50.77	0	1044718..1045950	-	410	189026185	-	TPASS_0962	-	hypothetical integral membrane protein
950	 52.36	0	1046061..1047290	-	409	189026186	-	TPASS_0963	-	hypothetical integral membrane protein
951	 54.80	0	1047280..1047987	-	235	189026187	-	TPASS_0964	-	ABC transporter, ATP-binding protein
952	 53.17	0	1047987..1048949	-	320	189026188	-	TPASS_0965	-	possible membrane fusion protein
953	 58.72	+1	1048974..1050608	-	544	189026189	-	TPASS_0966	-	hypothetical protein
954	 60.23	+1	1050655..1052208	-	517	189026190	-	TPASS_0967	-	hypothetical protein
955	 59.89	+1	1052205..1053827	-	540	189026191	-	TPASS_0968	-	hypothetical protein
956	 57.41	+1	1053824..1055443	-	539	189026192	-	TPASS_0969	-	hypothetical protein
957	 55.56	0	1055440..1055556	-	38	189026193	-	TPASS_0970	-	hypothetical protein
958	 55.12	0	1055578..1056192	-	204	189026194	tpd	TPASS_0971	-	membrane antigen, pathogen-specific
959	 59.09	+1	1056348..1057694	-	448	189026195	-	TPASS_0972	-	hypothetical integral membrane protein
960	 57.82	+1	1057782..1059443	+	553	189026196	pheS	TPASS_0973	-	phenylalanyl-tRNA synthetase, subunit alpha
961	 56.03	0	1059495..1059776	-	93	189026197	-	TPASS_0974	-	hypothetical protein
962	 59.39	+1	1059828..1060652	-	274	189026198	-	TPASS_0975	-	hypothetical protein
963	 58.62	+1	1060700..1062079	+	459	189026199	-	TPASS_0976	-	hypothetical protein
964	 56.91	0	1062066..1062926	+	286	189026200	-	TPASS_0977	-	hypothetical protein
965	 50.17	0	1062923..1063516	+	197	189026201	lsp	TPASS_0978	-	signal peptidase II
966	 51.68	0	1063686..1064459	+	257	189026202	-	TPASS_0979	-	hypothetical protein
967	 54.55	0	1064467..1065489	+	340	189026203	ntrB	TPASS_0980	-	histidine phosphokinase/phophatase
968	 48.97	0	1065549..1066712	+	387	189026204	-	TPASS_0981	-	possible sensory transduction histidine kinase
969	 46.89	-1	1066728..1067354	+	208	189026205	-	TPASS_0982	-	possible protein GlpG
970	 53.14	0	1067344..1068060	+	238	189026206	-	TPASS_0983	-	hypothetical protein
971	 48.28	-1	1068084..1070003	-	639	189026207	htpG	TPASS_0984	-	heat shock protein 90
972	 54.28	0	1070147..1071955	+	602	189026208	aspS	TPASS_0985	-	aspartyl-tRNA synthetase
973	 53.22	0	1072011..1072895	+	294	189026209	-	TPASS_0986	-	hypothetical integral membrane protein
974	 54.97	0	1072941..1073111	-	56	189026210	-	TPASS_0987	-	hypothetical protein
975	 51.97	0	1073178..1074014	+	278	189026211	-	TPASS_0988	-	hypothetical integral membrane protein
976	 57.39	+1	1074050..1074922	-	290	189026212	-	TPASS_0989	-	protein P26
977	 52.77	0	1074969..1078070	+	1033	189026213	-	TPASS_0990	-	hypothetical protein
978	 54.09	0	1078134..1078292	+	52	189026214	-	TPASS_0991	-	rubredoxin
979	 61.81	+2	1078325..1078612	+	95	189026215	-	TPASS_0992	-	hypothetical protein
980	 58.20	+1	1078749..1079705	-	318	189026216	-	TPASS_0993	-	possible rare lipoprotein A
981	 54.69	0	1080061..1080870	+	269	189026217	-	TPASS_0994	-	hypothetical protein
982	 46.08	-1	1080946..1082232	+	428	189026218	-	TPASS_0995	-	cyclic nucleotide binding protein
983	 50.40	0	1082315..1083931	-	538	189026219	-	TPASS_0996	-	hypothetical protein
984	 51.03	0	1084088..1085884	-	598	189026220	sppA	TPASS_0997	-	protease IV
985	 50.50	0	1085918..1087420	-	500	189026221	-	TPASS_0998	-	sodium/proton-dependent alanine transporter
986	 52.79	0	1087492..1089891	+	799	189026222	-	TPASS_0999	-	possible cell division protein
987	 53.27	0	1090069..1090740	+	223	189026223	-	TPASS_1000	-	hypothetical protein
988	 51.95	0	1090880..1092061	-	393	189026224	-	TPASS_1001	-	hypothetical protein
989	 49.33	0	1092075..1092743	-	222	189026225	-	TPASS_1002	-	hypothetical protein
990	 52.99	0	1092938..1093975	+	345	189026226	-	TPASS_1003	-	hypothetical protein
991	 55.94	0	1093998..1094603	-	201	189026227	recR	TPASS_1004	-	recombination protein RecR
992	 50.44	0	1094677..1096395	-	572	189026228	dnaZX	TPASS_1005	-	DNA polymerase III, subunits gamma and tau
993	 48.38	-1	1096454..1098367	-	637	189026229	gyrB	TPASS_1006	-	DNA gyrase, subunit B
994	 52.18	0	1098476..1099393	-	305	189026230	thyX	TPASS_1007	-	thymidylate synthase-complementing protein
995	 47.64	-1	1099436..1101973	-	845	189026231	nrdA	TPASS_1008	-	ribonucleoside-diphosphate reductase, subunit alpha
996	 52.01	0	1102100..1103170	-	356	189026232	gpsA	TPASS_1009	-	glycerol-3-phosphate dehydrogenase
997	 51.11	0	1103267..1103716	-	149	189026233	ndk	TPASS_1010	-	nucleoside-diphosphate kinase
998	 50.25	0	1103842..1104450	-	202	189026234	pth	TPASS_1011	-	peptidyl-tRNA hydrolase
999	 50.11	0	1104485..1105420	-	311	189026235	sigA	TPASS_1012	-	RNA polymerase sigma-43 factor
1000	 47.94	-1	1105625..1105891	+	88	189026236	groES	TPASS_1013	-	chaperonin GroES
1001	 56.38	0	1105902..1107836	-	644	189026237	-	TPASS_1014	-	hypothetical protein
1002	 53.29	0	1107802..1108227	-	141	189026238	nusB	TPASS_1015	-	N utilization substance protein B
1003	 49.45	0	1108224..1109309	-	361	189026239	tpn39b	TPASS_1016	-	basic membrane protein
1004	 54.51	0	1109382..1111199	-	605	189026240	alaS	TPASS_1017	-	alanyl-tRNA synthetase
1005	 53.00	0	1111371..1112885	+	504	189026241	-	TPASS_1018	-	hypothetical protein
1006	 54.05	0	1112907..1113350	+	147	189026242	gatC	TPASS_1019	-	glu-tRNA amidotransferase, subunit C
1007	 55.69	0	1113351..1114871	+	506	189026243	gatA	TPASS_1020	-	glu-tRNA amidotransferase, subunit A
1008	 52.16	0	1114864..1116393	+	509	189026244	gatB	TPASS_1021	-	glu-tRNA amidotransferase, subunit B
1009	 49.78	0	1116489..1117856	-	455	189026245	sms	TPASS_1022	-	DNA repair protein
1010	 54.55	0	1117903..1118397	-	164	189026246	recX	TPASS_1023	-	protein RecX
1011	 57.95	+1	1118525..1118914	-	129	189026247	rpsI	TPASS_1024	-	ribosomal protein S9
1012	 56.64	0	1118930..1119358	-	142	189026248	rplM	TPASS_1025	-	ribosomal protein L13
1013	 53.50	0	1119791..1121560	+	589	189026249	-	TPASS_1026	-	possible oligoendopeptidase F
1014	 54.57	0	1121682..1122458	+	258	189026250	udp	TPASS_1027	-	uridine phosphorylase
1015	 55.39	0	1122474..1124486	-	670	189026251	uvrD	TPASS_1028	-	DNA helicase II
1016	 61.28	+1	1124569..1125255	-	228	189026252	-	TPASS_1029	-	hypothetical protein
1017	 61.94	+2	1125413..1125772	-	119	189026253	-	TPASS_1030	-	hypothetical protein
1018	 58.12	+1	1125800..1127344	+	514	189026254	tprL	TPASS_1031	-	protein TprL
1019	 69.43	+2	1127412..1127846	-	144	189026255	-	TPASS_1032	-	hypothetical protein
1020	 61.75	+2	1127858..1128793	-	311	189026256	-	TPASS_1033	-	hypothetical protein
1021	 62.67	+2	1128867..1129892	+	341	189026257	-	TPASS_1034	-	hypothetical integral membrane protein
1022	 53.61	0	1129889..1132759	-	956	189026258	valS	TPASS_1035	-	valyl-tRNA synthetase
1023	 50.40	0	1132912..1135290	+	792	189026259	-	TPASS_1036	-	cation-transporting ATPase, P-type
1024	 49.51	0	1135380..1136096	-	238	189026260	hlyIII	TPASS_1037	-	hemolysin III
1025	 50.75	0	1136255..1136788	-	177	189026261	tpF1	TPASS_1038	-	bacterioferrin TpF1
1026	 53.40	0	1137015..1137587	+	190	189026262	apt	TPASS_1039	-	adenine phosphoribosyltransferase
1027	 52.18	0	1137610..1138665	-	351	189026263	lysS2	TPASS_1040	-	lysyl-tRNA synthetase
1028	 47.48	-1	1138665..1139378	-	237	189026264	clpP2	TPASS_1041	-	ATP-dependent Clp protease proteolytic component
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.