IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
47	 53.84	0	57495..58523	-	342	189025283	-	TPASS_0049	-	hypothetical protein
48	 53.37	0	58816..59424	-	202	189025284	-	TPASS_0050	-	hypothetical protein
49	 49.81	0	59575..60630	+	351	189025285	prfA	TPASS_0051	-	peptide chain release factor 1
50	 55.21	0	60600..61646	+	348	189025286	hemK	TPASS_0052	-	protoporphyrinogen oxidase
51	 45.08	-1	61735..62790	-	351	189025287	nrdB	TPASS_0053	-	ribonucleoside-diphosphate reductase, subunit beta
52	 53.12	0	62961..63920	+	319	189025288	-	TPASS_0054	-	hypothetical protein
53	 57.81	+1	64127..64363	+	78	189025289	-	TPASS_0055	-	hypothetical protein
54	 54.04	0	64360..66141	+	593	189025290	oadA	TPASS_0056	-	oxaloacetate decarboxylase, subunit alpha
55	 52.48	0	66153..67562	+	469	189025291	oadB	TPASS_0057	-	oxaloacetate decarboxylase, subunit beta
56	 53.00	0	67637..68953	-	438	189025292	dnaB	TPASS_0058	-	replicative DNA helicase DnaB
57	 53.95	0	68937..69164	-	75	189025293	-	TPASS_0059	-	hypothetical protein
58	 47.98	-1	69170..69640	-	156	189025294	rplI	TPASS_0060	-	ribosomal protein L9
59	 51.33	0	69746..70045	-	99	189025295	rpsR	TPASS_0061	-	ribosomal protein S18
60	 53.86	0	70162..70692	-	176	189025296	ssb	TPASS_0062	-	single-strand DNA binding protein Ssb
61	 53.55	0	70701..70982	-	93	189025297	rpsF	TPASS_0063	-	ribosomal protein S6
62	 49.65	0	71124..71699	+	191	189025298	-	TPASS_0064	-	hypothetical protein
63	 49.83	0	71773..72360	+	195	189025299	-	TPASS_0065	-	hypothetical protein
64	 52.06	0	72344..72658	+	104	189025300	-	TPASS_0066	-	hypothetical protein
65	 50.42	0	72646..73827	+	393	189025301	-	TPASS_0067	-	hypothetical protein
66	 53.18	0	74008..75030	+	340	189025302	-	TPASS_0068	-	hypothetical protein
67	 52.54	0	75086..75616	-	176	189025303	-	TPASS_0069	-	hypothetical protein
68	 52.97	0	75466..75852	-	128	189025304	-	TPASS_0070	-	hypothetical protein
69	 49.87	0	75903..78539	-	878	189025305	clpB	TPASS_0071	-	ATP-dependent Clp protease, subunit B
70	 48.72	0	78743..79015	+	90	189025306	-	TPASS_0072	-	hypothetical protein
71	 52.53	0	79085..80626	-	513	189025307	-	TPASS_0073	-	hypothetical protein
72	 55.11	0	80931..82340	+	469	189025308	y4oP	TPASS_0074	-	sugar ABC transporter, periplasmic binding protein
73	 49.38	0	82459..83349	+	296	189025309	y4oQ	TPASS_0075	-	sugar ABC transporter, permease protein
74	 48.42	-1	83389..84210	+	273	189025310	y4oR	TPASS_0076	-	sugar ABC transporter, permease protein
75	 50.22	0	84251..85867	+	538	189025311	cap	TPASS_0077	-	capsular polysaccharide biosynthesis protein
76	 50.04	0	85872..87110	+	412	189025312	spsC	TPASS_0078	-	spore coat polysaccharide biosynthesis protein
77	 50.16	0	87038..89260	+	740	189025313	-	TPASS_0079	-	hypothetical protein
78	 42.95	-2	89257..89724	+	155	189025314	-	TPASS_0080	-	quinoline 2-oxidoreductase
79	 46.64	-1	89731..90579	+	282	189025315	-	TPASS_0081	-	hypothetical protein
80	 52.69	0	90626..92428	-	600	189025316	fhlA	TPASS_0082	-	formate hydrogenlyase transcriptional activator FhlA
81	 54.18	0	93174..94454	+	426	189025317	-	TPASS_0083	-	hypothetical protein
82	 53.42	0	94434..94667	-	77	189025318	-	TPASS_0084	-	hypothetical protein
83	 49.66	0	94781..95227	-	148	189025319	ptsN1	TPASS_0085	-	PTS system, nitrogen regulatory IIA component
84	 53.65	0	95308..96252	+	314	189025320	-	TPASS_0086	-	hypothetical protein
85	 57.41	+1	96255..96794	-	179	189025321	-	TPASS_0087	-	hypothetical protein
86	 48.62	0	96778..97392	-	204	189025322	-	TPASS_0088	-	hypothetical protein
87	 45.39	-1	97422..98657	-	411	189025323	-	TPASS_0089	-	cyclic nucleotide binding protein
88	 57.75	+1	98740..99804	-	354	189025324	murB	TPASS_0090	-	UDP-N-acetylmuramate dehydrogenase
89	 54.51	0	99986..101548	+	520	189025325	cysS	TPASS_0091	-	cysteinyl-tRNA synthetase
90	 54.19	0	101619..102107	+	162	189025326	rpoE	TPASS_0092	-	RNA polymerase sigma-24 factor
91	 55.25	0	102091..102738	+	215	189025327	-	TPASS_0093	-	hypothetical protein
92	 51.43	0	102876..103886	+	336	189025328	pta	TPASS_0094	-	phosphate acetyltransferase
93	 56.65	0	103886..105832	+	648	189025329	-	TPASS_0095	-	hypothetical protein
94	 53.44	0	105906..106268	-	120	189025330	-	TPASS_0096	-	possible dnaK suppressor
95	 54.79	0	106438..106656	+	72	189025331	infA	TPASS_0097	-	translation initiation factor 1
96	 60.22	+1	106716..107366	-	216	189025332	-	TPASS_0098	-	possible heat-shock protein
97	 55.56	0	107370..108125	-	251	189025333	smbA	TPASS_0099	-	uridylate kinase
98	 54.89	0	108320..108922	+	200	189025334	-	TPASS_0100	-	possible thioredoxin
99	 55.35	0	108915..109709	+	264	189025335	ccdA	TPASS_0101	-	cytochrome c biogenesis protein
100	 45.09	-1	109747..111720	-	657	189025336	rep	TPASS_0102	-	Rep helicase, single-stranded DNA-dependent ATPase
101	 52.74	0	111785..113608	+	607	189025337	-	TPASS_0103	-	possible ATP-dependent DNA helicase
102	 48.43	-1	113855..115636	+	593	189025338	ushA	TPASS_0104	-	5'-nucleotidase
103	 44.76	-1	115803..118796	+	997	189025339	polA	TPASS_0105	-	DNA polymerase I
104	 49.18	0	118828..120360	-	510	189025340	-	TPASS_0106	-	possible carnitine transporter
105	 47.02	-1	120341..121918	-	525	189025341	licC	TPASS_0107	-	protein LicC
106	 51.08	0	122272..123657	-	461	189025342	pfk	TPASS_0108	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase
107	 55.29	0	123759..124637	-	292	189025343	-	TPASS_0109	-	possible rRNA methylase
108	 49.60	0	125178..126911	+	577	189025344	-	TPASS_0110	-	hypothetical protein
109	 47.90	-1	126971..128398	+	475	189025345	rpoN	TPASS_0111	-	RNA polymerase sigma-54 factor
110	 46.86	-1	128395..129747	-	450	189025346	pepC	TPASS_0112	-	aminopeptidase C
111	 46.61	-1	129889..130875	+	328	189025347	hflK	TPASS_0113	-	Lambda CII stability-governing protein
112	 49.60	0	130880..131875	+	331	189025348	hflC	TPASS_0114	-	Lambda CII stability-governing protein
113	 54.32	0	131900..132709	-	269	189025349	thiD	TPASS_0115	-	phosphomethypyrimidine kinase
114	 45.34	-1	132860..134866	+	668	189025350	uvrB	TPASS_0116	-	excinuclease ABC, subunit B
115	 56.09	0	134898..136694	-	598	189025351	tprC	TPASS_0117	-	protein TprC
116	 55.61	0	136774..138039	-	421	189025352	-	TPASS_0118	-	hypothetical protein
117	 55.15	0	138137..138796	-	219	189025353	yaeE	TPASS_0119	-	amino acid ABC transporter, permease protein
118	 51.98	0	138796..139605	-	269	189025354	-	TPASS_0120	-	amino acid ABC transporter, ATP-binding protein
119	 57.21	0	139735..140802	+	355	189025355	-	TPASS_0121	-	hypothetical protein
120	 53.96	0	141022..142878	-	618	189025356	pckA	TPASS_0122	-	phosphoenolpyruvate carboxykinase
121	 48.89	0	142984..145554	+	856	189025357	-	TPASS_0123	-	hypothetical protein
122	 52.57	0	145568..146674	+	368	189025358	-	TPASS_0124	-	possible GTP-binding protein
123	 56.60	0	146751..147545	+	264	189025359	exoA	TPASS_0125	-	exodeoxyribonuclease
124	 59.13	+1	147609..148484	-	291	189025360	-	TPASS_0126	-	hypothetical protein
125	 54.86	0	149847..150227	+	126	189025361	-	TPASS_0127	-	hypothetical protein
126	 62.64	+2	150729..151076	+	115	189025362	-	TPASS_0128	-	hypothetical protein
127	 59.54	+1	151061..151537	+	158	189025363	-	TPASS_0129	-	hypothetical protein
128	 58.81	+1	151866..152285	-	139	189025364	-	TPASS_0130	-	hypothetical protein
129	 56.09	0	152357..154153	-	598	189025365	tprD	TPASS_0131	-	protein TprD
130	 65.38	+2	154331..154408	-	25	189025366	-	TPASS_0132	-	hypothetical protein
131	 56.77	0	154393..155625	-	410	189025367	-	TPASS_0133	-	hypothetical protein
132	 57.29	+1	155622..156752	-	376	189025368	-	TPASS_0134	-	hypothetical protein
133	 59.02	+1	156704..157645	-	313	189025369	-	TPASS_0135	-	hypothetical protein
134	 60.72	+1	157985..159463	+	492	189025370	-	TPASS_0136	-	hypothetical protein
135	 53.62	0	159442..159579	+	45	189025371	-	TPASS_0137	-	hypothetical protein
136	 49.05	0	159716..160453	-	245	189025372	-	TPASS_0138	-	hypothetical protein
137	 48.05	-1	160461..161153	-	230	189025373	-	TPASS_0139	-	hypothetical protein
138	 47.16	-1	161193..162920	-	575	189025374	ntpJ	TPASS_0140	-	K+ transport protein
139	 55.99	0	163092..163625	+	177	189025375	dat	TPASS_0141	-	methylated-DNA-protein-cysteine S-methyltransferase
140	 51.73	0	163576..164238	-	220	189025376	-	TPASS_0142	-	possible thiamine ABC transporter, ATP-binding protein
141	 53.20	0	164231..166012	-	593	189025377	-	TPASS_0143	-	possible thiamine ABC transporter, permease protein
142	 57.74	+1	165970..166977	-	335	189025378	-	TPASS_0144	-	possible thiamine ABC transporter, thiamine-binding periplasmic protein
143	 53.83	0	167087..169057	+	656	189025379	-	TPASS_0145	-	long-chain-fatty-acid--CoA ligase
144	 44.89	-1	170462..172321	-	619	189025380	-	TPASS_0147	-	possible alpha-amylase 1
145	 51.30	0	172318..172896	-	192	189025381	-	TPASS_0148	-	hypothetical protein
146	 50.17	0	172890..173483	-	197	189025382	-	TPASS_0149	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.