IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
867	 42.15	-2	958649..959374	-	241	189026103	-	TPASS_0880	-	possible membrane spanning protein
868	 46.84	-1	959364..960170	-	268	189026104	natA	TPASS_0881	-	ABC transporter, ATP-binding protein
869	 42.91	-2	960249..961751	-	500	189026105	-	TPASS_0882	-	hypothetical protein
870	 37.89	-2	961717..962814	-	365	189026106	-	TPASS_0883	-	hypothetical integral membrane protein
871	 45.09	-1	962832..963920	-	362	189026107	-	TPASS_0884	-	hypothetical integral membrane protein
872	 56.24	0	963950..964390	-	146	189026108	dut	TPASS_0885	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
873	 53.53	0	964387..966495	-	702	189026109	pnp	TPASS_0886	-	polyribonucleotide nucleotidyltransferase
874	 53.33	0	966643..966912	-	89	189026110	rpsO	TPASS_0887	-	ribosomal protein S15
875	 60.51	+1	966928..967755	-	275	189026111	ribF	TPASS_0888	-	riboflavin kinase/FMN adenylyltransferase
876	 56.40	0	967759..968859	-	366	189026112	truB	TPASS_0889	-	tRNA pseudouridine 55 synthase
877	 49.08	0	968837..969217	-	126	189026113	rbfA	TPASS_0890	-	ribosome-binding factor A
878	 52.87	0	969214..971742	-	842	189026114	infB	TPASS_0891	-	translation initiation factor 2
879	 49.66	0	971918..973375	-	485	189026115	nusA	TPASS_0892	-	N utilization substance protein A
880	 58.17	+1	973425..973895	-	156	189026116	-	TPASS_0893	-	hypothetical protein
881	 51.22	0	974070..975092	-	340	189026117	-	TPASS_0894	-	hypothetical protein
882	 53.85	0	975099..975605	-	168	189026118	-	TPASS_0895	-	hypothetical protein
883	 49.67	0	975627..975779	-	50	189026119	-	TPASS_0896	-	hypothetical protein
884	 36.23	-2	975761..977278	-	505	189026120	tprK	TPASS_0897	-	protein TprK
885	 58.04	+1	977275..980994	-	1239	189026121	-	TPASS_0898	-	possible ATP-dependent nuclease, subunit A
886	 53.74	0	980991..981578	-	195	189026122	-	TPASS_0899	-	hypothetical protein
887	 55.81	0	981557..983950	-	797	189026123	-	TPASS_0900	-	hypothetical protein
888	 51.31	0	983989..985401	-	470	189026124	-	TPASS_0901	-	hypothetical integral membrane protein
889	 55.78	0	985442..986323	-	293	189026125	est	TPASS_0902	-	carboxylesterase
890	 57.72	+1	986325..987923	+	532	189026126	murD	TPASS_0903	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
891	 50.00	0	987916..988167	+	83	189026127	-	TPASS_0904	-	hypothetical protein
892	 59.95	+1	988130..988501	+	123	189026128	rpsP	TPASS_0905	-	ribosomal protein S16
893	 55.56	0	988510..988752	+	80	189026129	-	TPASS_0906	-	hypothetical protein
894	 57.14	0	988815..989339	+	174	189026130	-	TPASS_0907	-	hypothetical protein
895	 55.64	0	989336..990088	+	250	189026131	trmD	TPASS_0908	-	tRNA (guanine-N1)-methyltransferase
896	 52.15	0	990060..990431	+	123	189026132	rplS	TPASS_0909	-	ribosomal protein L19
897	 57.11	0	990428..991348	+	306	189026133	-	TPASS_0910	-	hypothetical protein
898	 48.41	-1	991370..991621	+	83	189026134	-	TPASS_0911	-	hypothetical protein
899	 47.69	-1	991634..992956	+	440	189026135	-	TPASS_0912	-	hypothetical protein
900	 48.82	0	992940..993320	+	126	189026136	-	TPASS_0913	-	hypothetical protein
901	 47.80	-1	993492..993878	+	128	189026137	-	TPASS_0914	-	hypothetical protein
902	 49.89	0	993952..995286	+	444	189026138	-	TPASS_0915	-	hypothetical protein
903	 55.81	0	995343..995471	+	42	189026139	-	TPASS_0916	-	hypothetical protein
904	 48.37	-1	995455..996804	+	449	189026140	mgtE	TPASS_0917	-	Mg2+ transport protein
905	 61.50	+1	996819..997592	+	257	189026141	-	TPASS_0918	-	hypothetical integral membrane protein
906	 49.06	0	997618..997935	-	105	189026142	trx	TPASS_0919	-	thioredoxin
907	 54.57	0	998158..1000587	+	809	189026143	-	TPASS_0920	-	hypothetical protein
908	 49.40	0	1000695..1002032	+	445	189026144	-	TPASS_0921	-	NADH oxidase
909	 65.21	+2	1002166..1003059	-	297	189026145	-	TPASS_0922	-	hypothetical protein
910	 56.57	0	1003098..1004117	-	339	189026146	-	TPASS_0923	-	hypothetical protein
911	 56.46	0	1004441..1006027	+	528	189026147	tex	TPASS_0924	-	protein Tex
912	 53.06	0	1007144..1007584	+	146	189026148	-	TPASS_0925	-	flavodoxin
913	 56.27	0	1007735..1009273	-	512	189026149	-	TPASS_0926	-	possible signal peptidase I
914	 52.79	0	1009365..1009955	+	196	189026150	-	TPASS_0927	-	hypothetical protein
915	 59.38	+1	1010050..1010790	+	246	189026151	-	TPASS_0928	-	hypothetical protein
916	 55.25	0	1010802..1011572	+	256	189026152	-	TPASS_0929	-	hypothetical protein
917	 50.64	0	1011596..1013317	+	573	189026153	-	TPASS_0930	-	hypothetical protein
918	 46.19	-1	1013401..1014831	-	476	189026154	-	TPASS_0931	-	hypothetical protein
919	 53.76	0	1014841..1014933	-	30	189026155	-	TPASS_0932	-	hypothetical protein
920	 51.32	0	1014943..1016565	-	540	189026156	murE	TPASS_0933	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
921	 49.18	0	1016701..1017924	+	407	189026157	-	TPASS_0934	-	possible glutamate transporter
922	 50.37	0	1017917..1018855	-	312	189026158	-	TPASS_0935	-	possible N-acetylphosphinothricin-tripetide-deacetylase
923	 52.23	0	1019049..1020122	-	357	189026159	-	TPASS_0936	-	possible hemolysin
924	 53.62	0	1020294..1020929	-	211	189026160	-	TPASS_0937	-	hypothetical protein
925	 55.11	0	1020926..1021756	-	276	189026161	-	TPASS_0938	-	hypothetical protein
926	 51.48	0	1021821..1025375	-	1184	189026162	-	TPASS_0939	-	pyruvate oxidoreductase
927	 54.61	0	1025391..1025531	-	46	189026163	-	TPASS_0940	-	hypothetical protein
928	 50.29	0	1025570..1026088	-	172	189026164	-	TPASS_0941	-	hypothetical protein
929	 56.34	0	1026165..1026629	-	154	189026165	-	TPASS_0942	-	hypothetical protein
930	 51.23	0	1026635..1027081	-	148	189026166	fliS	TPASS_0943	-	flagellar protein
931	 53.20	0	1027130..1028302	-	390	189026167	-	TPASS_0944	-	hypothetical protein
932	 54.34	0	1028473..1029129	-	218	189026168	cfxE	TPASS_0945	-	ribulose-phosphate 3-epimerase
933	 57.25	+1	1029281..1029949	+	222	189026169	gidB	TPASS_0946	-	glucose-inhibited division protein B
934	 52.47	0	1029994..1030641	-	215	189026170	cyp	TPASS_0947	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-binding
935	 51.44	0	1030638..1031333	-	231	189026171	jag	TPASS_0948	-	spoIIIJ-associated protein
936	 51.30	0	1031349..1033346	-	665	189026172	-	TPASS_0949	-	membrane protein
937	 55.79	0	1033622..1033906	-	94	189026173	-	TPASS_0950	-	hypothetical protein
938	 59.62	+1	1033910..1034065	-	51	189026174	rpmH	TPASS_0951	-	ribosomal protein L34
939	 48.94	0	1034185..1035222	-	345	189026175	-	TPASS_0952	-	possible lipase
940	 56.09	0	1035304..1036494	-	396	189026176	traB	TPASS_0953	-	pheromone shutdown protein
941	 53.38	0	1036581..1038017	-	478	189026177	-	TPASS_0954	-	hypothetical protein
942	 53.85	0	1038089..1038361	-	90	189026178	-	TPASS_0955	-	hypothetical protein
943	 56.07	0	1038457..1039428	+	323	189026179	-	TPASS_0956	-	hypothetical protein
944	 50.15	0	1039519..1040547	+	342	189026180	tp33	TPASS_0957	-	protein Tp33
945	 52.66	0	1040579..1042477	+	632	189026181	dctM	TPASS_0958	-	dicarboxylate transporter
946	 54.36	0	1042546..1042935	-	129	189026182	-	TPASS_0959	-	hypothetical protein
947	 52.96	0	1042947..1043741	-	264	189026183	flgG1	TPASS_0960	-	flagellar basal-body rod protein
948	 47.18	-1	1043817..1044632	-	271	189026184	flgG2	TPASS_0961	-	flagellar basal-body rod protein
949	 50.77	0	1044718..1045950	-	410	189026185	-	TPASS_0962	-	hypothetical integral membrane protein
950	 52.36	0	1046061..1047290	-	409	189026186	-	TPASS_0963	-	hypothetical integral membrane protein
951	 54.80	0	1047280..1047987	-	235	189026187	-	TPASS_0964	-	ABC transporter, ATP-binding protein
952	 53.17	0	1047987..1048949	-	320	189026188	-	TPASS_0965	-	possible membrane fusion protein
953	 58.72	+1	1048974..1050608	-	544	189026189	-	TPASS_0966	-	hypothetical protein
954	 60.23	+1	1050655..1052208	-	517	189026190	-	TPASS_0967	-	hypothetical protein
955	 59.89	+1	1052205..1053827	-	540	189026191	-	TPASS_0968	-	hypothetical protein
956	 57.41	+1	1053824..1055443	-	539	189026192	-	TPASS_0969	-	hypothetical protein
957	 55.56	0	1055440..1055556	-	38	189026193	-	TPASS_0970	-	hypothetical protein
958	 55.12	0	1055578..1056192	-	204	189026194	tpd	TPASS_0971	-	membrane antigen, pathogen-specific
959	 59.09	+1	1056348..1057694	-	448	189026195	-	TPASS_0972	-	hypothetical integral membrane protein
960	 57.82	+1	1057782..1059443	+	553	189026196	pheS	TPASS_0973	-	phenylalanyl-tRNA synthetase, subunit alpha
961	 56.03	0	1059495..1059776	-	93	189026197	-	TPASS_0974	-	hypothetical protein
962	 59.39	+1	1059828..1060652	-	274	189026198	-	TPASS_0975	-	hypothetical protein
963	 58.62	+1	1060700..1062079	+	459	189026199	-	TPASS_0976	-	hypothetical protein
964	 56.91	0	1062066..1062926	+	286	189026200	-	TPASS_0977	-	hypothetical protein
965	 50.17	0	1062923..1063516	+	197	189026201	lsp	TPASS_0978	-	signal peptidase II
966	 51.68	0	1063686..1064459	+	257	189026202	-	TPASS_0979	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.