IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
782	 49.32	0	860479..862098	+	539	189026018	-	TPASS_0793	-	hypothetical protein
783	 53.23	0	862135..863325	-	396	189026019	metK	TPASS_0794	-	S-adenosylmethionine synthetase
784	 55.35	0	863379..863537	+	52	189026020	-	TPASS_0795	-	hypothetical protein
785	 56.11	0	863526..864614	-	362	189026021	-	TPASS_0796	-	hypothetical protein
786	 56.69	0	864674..865465	-	263	189026022	proC	TPASS_0797	-	1-pyrroline-5-carboxylate reductase
787	 53.86	0	865516..867951	-	811	189026023	metG	TPASS_0798	-	methionyl-tRNA synthetase
788	 46.41	-1	867984..868136	+	50	189026024	-	TPASS_0799	-	hypothetical protein
789	 57.84	+1	868279..869751	+	490	189026025	dacC	TPASS_0800	-	serine-type D-Ala-D-Ala carboxypeptidase
790	 48.85	0	869812..872241	-	809	189026026	clpA	TPASS_0801	-	ATP-dependent Clp protease, subunit A
791	 55.15	0	872287..872616	+	109	189026027	-	TPASS_0802	-	hypothetical protein
792	 49.38	0	872630..873838	+	402	189026028	-	TPASS_0803	-	hypothetical protein
793	 47.77	-1	873916..875079	+	387	189026029	ugpC	TPASS_0804	-	sugar ABC transporter, ATP-binding protein
794	 55.53	0	874930..877209	-	759	189026030	rnb	TPASS_0805	-	exoribonuclease II
795	 55.64	0	877206..878702	-	498	189026031	-	TPASS_0806	-	possible protein FemA
796	 55.03	0	878831..879019	+	62	189026032	rpmF	TPASS_0807	-	ribosomal protein L32
797	 48.10	-1	879080..879316	+	78	189026033	acpP	TPASS_0808	-	acyl carrier protein
798	 56.86	0	879313..880077	+	254	189026034	rnc	TPASS_0809	-	ribonuclease III
799	 55.04	0	880108..881019	+	303	189026035	dam	TPASS_0810	-	DNA adenine methyltransferase
800	 44.44	-1	881090..881215	-	41	189026036	-	TPASS_0811	-	hypothetical protein
801	 55.01	0	882626..883912	-	428	189026037	-	TPASS_0813	-	hypothetical protein
802	 53.14	0	884135..885058	+	307	189026038	trxB	TPASS_0814	-	thioredoxin reductase
803	 52.13	0	885180..886163	+	327	189026039	-	TPASS_0815	-	hypothetical protein
804	 52.10	0	886235..886900	-	221	189026040	-	TPASS_0816	-	hypothetical protein
805	 52.35	0	887038..888336	-	432	189026041	eno	TPASS_0817	-	enolase
806	 52.29	0	888333..888485	-	50	189026042	-	TPASS_0818	-	hypothetical protein
807	 51.23	0	888512..889444	-	310	189026043	-	TPASS_0819	-	hypothetical protein
808	 55.64	0	889472..890242	-	256	189026044	-	TPASS_0820	-	hypothetical protein
809	 53.90	0	890338..891144	-	268	189026045	tpn32	TPASS_0821	-	lipoprotein Tpn32
810	 55.30	0	891225..892130	-	301	189026046	-	TPASS_0822	-	hypothetical protein
811	 55.30	0	892218..892604	-	128	189026047	rbo	TPASS_0823	-	desulfoferrodoxin
812	 56.05	0	893001..894893	+	630	189026048	dxs	TPASS_0824	-	deoxyxylulose-5-phosphate synthase
813	 62.90	+2	894890..895075	+	61	189026049	-	TPASS_0825	-	hypothetical protein
814	 51.09	0	895062..895883	+	273	189026050	-	TPASS_0826	-	hypothetical protein
815	 53.44	0	895546..896823	+	425	189026051	-	TPASS_0827	-	hypothetical protein
816	 49.21	0	896820..897197	+	125	189026052	acpS	TPASS_0828	-	holo-acyl-carrier protein synthase
817	 45.76	-1	897194..898078	+	294	189026053	-	TPASS_0829	-	hypothetical protein
818	 50.89	0	898075..898917	+	280	189026054	hisT	TPASS_0830	-	pseudouridylate synthase
819	 50.17	0	898927..900696	-	589	189026055	argS	TPASS_0831	-	arginyl-tRNA synthetase
820	 55.88	0	900719..901534	-	271	189026056	-	TPASS_0832	-	hypothetical protein
821	 56.02	0	901601..902323	+	240	189026057	-	TPASS_0833	-	hypothetical protein
822	 51.88	0	902380..903630	-	416	189026058	tyrS	TPASS_0834	-	tyrosyl-tRNA synthetase
823	 53.37	0	903717..906521	-	934	189026059	-	TPASS_0835	-	possible ankyrin
824	 53.09	0	906662..907486	-	274	189026060	-	TPASS_0836	-	hypothetical protein
825	 57.90	+1	907634..909412	+	592	189026061	thrS	TPASS_0837	-	threonyl-tRNA synthetase
826	 46.55	-1	909461..911125	-	554	189026062	-	TPASS_0838	-	ABC transporter, ATP-binding protein
827	 50.50	0	911200..912207	-	335	189026063	-	TPASS_0839	-	hypothetical protein
828	 49.78	0	912312..914561	+	749	189026064	-	TPASS_0840	-	hypothetical integral membrane protein
829	 52.88	0	914623..916080	-	485	189026065	htrA2	TPASS_0841	-	periplasmic serine protease DO
830	 55.08	0	916392..917159	-	255	189026066	map	TPASS_0842	-	methionine aminopeptidase
831	 54.67	0	917283..918107	-	274	189026067	-	TPASS_0843	-	possible heat shock protein
832	 54.89	0	918200..919252	+	350	189026068	gap	TPASS_0844	-	glyceraldehyde 3-phosphate dehydrogenase
833	 61.93	+2	919307..919897	-	196	189026069	-	TPASS_0845	-	hypothetical protein
834	 53.82	0	919878..920204	-	108	189026070	-	TPASS_0846	-	hypothetical protein
835	 50.30	0	920204..920539	-	111	189026071	-	TPASS_0847	-	hypothetical protein
836	 52.30	0	920533..920901	-	122	189026072	rplT	TPASS_0848	-	ribosomal protein L20
837	 45.27	-1	920934..921134	-	66	189026073	rpmI	TPASS_0849	-	ribosomal protein L35
838	 51.48	0	921187..921726	-	179	189026074	infC	TPASS_0850	-	translation initiation factor 3
839	 47.03	-1	921889..924063	+	724	189026075	-	TPASS_0851	-	hypothetical protein
840	 48.45	-1	924092..925090	-	332	189026076	lgt	TPASS_0852	-	prolipoprotein diacylglyceryl transferase
841	 46.97	-1	925241..926377	-	378	189026077	ylxH2	TPASS_0853	-	ATP-binding protein
842	 48.50	-1	926432..931033	-	1533	189026078	-	TPASS_0854	-	hypothetical protein
843	 56.26	0	931030..934413	-	1127	189026079	-	TPASS_0855	-	hypothetical protein
844	 58.49	+1	934569..935546	+	325	189026080	-	TPASS_0856	-	hypothetical protein
845	 64.49	+2	935549..935869	-	106	189026081	-	TPASS_0857	-	hypothetical protein
846	 57.70	+1	935854..937080	+	408	189026082	-	TPASS_0858	-	hypothetical protein
847	 64.52	+2	937162..937860	+	232	189026083	-	TPASS_0859	-	hypothetical protein
848	 59.20	+1	937925..938647	+	240	189026084	-	TPASS_0860	-	hypothetical protein
849	 56.87	0	938722..940629	-	635	189026085	glmS	TPASS_0861	-	glucosamine-fructose-6-phosphate aminotransferase
850	 54.09	0	940866..941660	-	264	189026086	fklB	TPASS_0862	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa
851	 57.94	+1	941795..943078	+	427	189026087	nifS2	TPASS_0863	-	nitrogen fixation protein
852	 55.58	0	943137..944777	-	546	189026088	-	TPASS_0864	-	hypothetical protein
853	 54.33	0	944811..946253	-	480	189026089	-	TPASS_0865	-	hypothetical protein
854	 57.53	+1	948246..948431	-	61	189026090	-	TPASS_0867	-	hypothetical protein
855	 52.94	0	948600..948956	+	118	189026091	flaB1	TPASS_0868	-	flagellar filament 34.5 kDa core protein
856	 55.27	0	949468..949704	+	78	189026092	-	TPASS_0869	-	hypothetical protein
857	 53.50	0	949732..950589	+	285	189026093	flaB3	TPASS_0870	-	flagellar filament 31 kDa core protein
858	 46.30	-1	950650..950811	-	53	189026094	-	TPASS_0871	-	hypothetical protein
859	 53.90	0	950887..953055	+	722	189026095	fliD	TPASS_0872	-	flagellar filament cap protein
860	 46.60	-1	953067..953669	+	200	189026096	-	TPASS_0873	-	hypothetical protein
861	 46.38	-1	953666..953941	+	91	189026097	-	TPASS_0874	-	hypothetical protein
862	 56.86	0	953981..954388	+	135	189026098	-	TPASS_0875	-	hypothetical protein
863	 52.40	0	954435..955100	+	221	189026099	-	TPASS_0876	-	hypothetical protein
864	 43.35	-2	955105..956202	+	365	189026100	-	TPASS_0877	-	hypothetical protein
865	 44.06	-2	956215..957165	-	316	189026101	-	TPASS_0878	-	hypothetical protein
866	 43.45	-2	957171..958652	-	493	189026102	-	TPASS_0879	-	hypothetical protein
867	 42.15	-2	958649..959374	-	241	189026103	-	TPASS_0880	-	possible membrane spanning protein
868	 46.84	-1	959364..960170	-	268	189026104	natA	TPASS_0881	-	ABC transporter, ATP-binding protein
869	 42.91	-2	960249..961751	-	500	189026105	-	TPASS_0882	-	hypothetical protein
870	 37.89	-2	961717..962814	-	365	189026106	-	TPASS_0883	-	hypothetical integral membrane protein
871	 45.09	-1	962832..963920	-	362	189026107	-	TPASS_0884	-	hypothetical integral membrane protein
872	 56.24	0	963950..964390	-	146	189026108	dut	TPASS_0885	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
873	 53.53	0	964387..966495	-	702	189026109	pnp	TPASS_0886	-	polyribonucleotide nucleotidyltransferase
874	 53.33	0	966643..966912	-	89	189026110	rpsO	TPASS_0887	-	ribosomal protein S15
875	 60.51	+1	966928..967755	-	275	189026111	ribF	TPASS_0888	-	riboflavin kinase/FMN adenylyltransferase
876	 56.40	0	967759..968859	-	366	189026112	truB	TPASS_0889	-	tRNA pseudouridine 55 synthase
877	 49.08	0	968837..969217	-	126	189026113	rbfA	TPASS_0890	-	ribosome-binding factor A
878	 52.87	0	969214..971742	-	842	189026114	infB	TPASS_0891	-	translation initiation factor 2
879	 49.66	0	971918..973375	-	485	189026115	nusA	TPASS_0892	-	N utilization substance protein A
880	 58.17	+1	973425..973895	-	156	189026116	-	TPASS_0893	-	hypothetical protein
881	 51.22	0	974070..975092	-	340	189026117	-	TPASS_0894	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.