IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
728	 45.86	-1	805638..806834	-	398	189025964	-	TPASS_0739	-	hypothetical protein
729	 55.38	0	806908..807474	-	188	189025965	-	TPASS_0740	-	hypothetical protein
730	 55.28	0	807602..808216	-	204	189025966	-	TPASS_0741	-	hypothetical protein
731	 57.74	+1	808213..809343	-	376	189025967	obg	TPASS_0742	-	GTP-binding protein
732	 54.17	0	809461..809724	-	87	189025968	rpmA	TPASS_0743	-	ribosomal protein L27
733	 56.88	0	809755..810081	-	108	189025969	-	TPASS_0744	-	hypothetical protein
734	 51.89	0	810094..810411	-	105	189025970	rplU	TPASS_0745	-	ribosomal protein L21
735	 51.07	0	810518..813223	-	901	189025971	-	TPASS_0746	-	pyruvate, phosphate dikinase
736	 50.14	0	813233..814267	-	344	189025972	-	TPASS_0747	-	hypothetical protein
737	 48.26	-1	814356..816392	-	678	189025973	cfpA	TPASS_0748	-	cytoplasmic filament protein A
738	 37.84	-2	816370..816591	-	73	189025974	-	TPASS_0749	-	hypothetical protein
739	 52.23	0	816561..817232	+	223	189025975	-	TPASS_0750	-	hypothetical protein
740	 56.58	0	817269..817982	+	237	189025976	-	TPASS_0751	-	hypothetical protein/laminin-binding protein
741	 54.59	0	818120..819262	-	380	189025977	-	TPASS_0752	-	hypothetical protein
742	 47.72	-1	819343..819627	-	94	189025978	-	TPASS_0753	-	hypothetical protein
743	 48.80	0	819624..820994	-	456	189025979	-	TPASS_0754	-	hypothetical protein
744	 48.43	-1	821036..821578	-	180	189025980	ptsN2	TPASS_0755	-	PTS system, nitrogen regulatory IIA component
745	 55.42	0	821778..822737	-	319	189025981	fmt	TPASS_0756	-	methionyl-tRNA formyltransferase
746	 55.42	0	822741..823229	-	162	189025982	def	TPASS_0757	-	polypeptide deformylase
747	 48.57	0	823270..823479	-	69	189025983	rpsU	TPASS_0758	-	ribosomal protein S21
748	 54.17	0	823598..823717	+	39	189025984	-	TPASS_0759	-	hypothetical protein
749	 54.26	0	823674..825632	+	652	189025985	pbp3	TPASS_0760	-	penicillin-binding protein
750	 53.81	0	825613..826491	+	292	189025986	-	TPASS_0761	-	hypothetical protein
751	 57.70	+1	826520..827701	+	393	189025987	-	TPASS_0762	-	hypothetical protein
752	 53.93	0	827763..828704	-	313	189025988	-	TPASS_0763	-	hypothetical protein
753	 53.74	0	828663..829838	+	391	189025989	-	TPASS_0764	-	hypothetical protein
754	 52.95	0	829820..831649	-	609	189025990	ftsH	TPASS_0765	-	cell division protein
755	 57.60	+1	832052..832933	+	293	189025991	-	TPASS_0766	-	hypothetical protein
756	 52.97	0	833144..835231	+	695	189025992	fusA2	TPASS_0767	-	translation elongation factor G
757	 56.07	0	835370..836407	+	345	189025993	tmpA	TPASS_0768	-	membrane protein
758	 55.83	0	836404..837381	+	325	189025994	tmpB	TPASS_0769	-	outer membrane protein
759	 53.54	0	837426..839375	+	649	189025995	-	TPASS_0770	-	ATP-dependent RNA helicase
760	 46.30	-1	839396..841177	-	593	189025996	-	TPASS_0771	-	hypothetical integral membrane protein
761	 50.67	0	841181..842005	+	274	189025997	-	TPASS_0772	-	hypothetical protein
762	 55.72	0	842045..843241	-	398	189025998	htrA1	TPASS_0773	-	periplasmic serine protease DO
763	 50.67	0	843586..844260	+	224	189025999	mgtC	TPASS_0774	-	Mg2+ transport protein
764	 55.19	0	844340..844975	+	211	189026000	nth	TPASS_0775	-	endonuclease III
765	 57.27	+1	845052..845828	-	258	189026001	-	TPASS_0776	-	hypothetical protein
766	 49.78	0	845881..846105	-	74	189026002	-	TPASS_0777	-	hypothetical protein
767	 53.95	0	846174..847085	-	303	189026003	mazG	TPASS_0778	-	protein MazG
768	 50.39	0	847082..847726	-	214	189026004	dedA	TPASS_0779	-	protein DedA
769	 55.39	0	847773..849812	-	679	189026005	nadE	TPASS_0780	-	NH(3)-dependent NAD(+) synthetase
770	 54.33	0	849849..850310	-	153	189026006	-	TPASS_0781	-	hypothetical protein
771	 51.58	0	850356..850799	-	147	189026007	-	TPASS_0782	-	hypothetical protein
772	 51.76	0	850828..851961	-	377	189026008	-	TPASS_0783	-	hypothetical protein
773	 54.83	0	852127..852726	+	199	189026009	-	TPASS_0784	-	hypothetical protein
774	 49.78	0	852723..853409	+	228	189026010	-	TPASS_0785	-	hypothetical protein
775	 52.24	0	853541..854254	+	237	189026011	-	TPASS_0786	-	possible ABC transporter, ATP-binding protein
776	 51.43	0	854301..854720	-	139	189026012	-	TPASS_0787	-	hypothetical protein
777	 58.14	+1	854802..855692	+	296	189026013	-	TPASS_0788	-	hypothetical protein
778	 50.97	0	855705..856481	-	258	189026014	-	TPASS_0789	-	hypothetical protein
779	 50.32	0	856500..859166	-	888	189026015	-	TPASS_0790	-	possible antibiotic transport protein
780	 54.07	0	859309..859554	-	81	189026016	-	TPASS_0791	-	hypothetical protein
781	 52.85	0	859540..860400	+	286	189026017	flaB2	TPASS_0792	-	flagellar filament 33 kDa core protein
782	 49.32	0	860479..862098	+	539	189026018	-	TPASS_0793	-	hypothetical protein
783	 53.23	0	862135..863325	-	396	189026019	metK	TPASS_0794	-	S-adenosylmethionine synthetase
784	 55.35	0	863379..863537	+	52	189026020	-	TPASS_0795	-	hypothetical protein
785	 56.11	0	863526..864614	-	362	189026021	-	TPASS_0796	-	hypothetical protein
786	 56.69	0	864674..865465	-	263	189026022	proC	TPASS_0797	-	1-pyrroline-5-carboxylate reductase
787	 53.86	0	865516..867951	-	811	189026023	metG	TPASS_0798	-	methionyl-tRNA synthetase
788	 46.41	-1	867984..868136	+	50	189026024	-	TPASS_0799	-	hypothetical protein
789	 57.84	+1	868279..869751	+	490	189026025	dacC	TPASS_0800	-	serine-type D-Ala-D-Ala carboxypeptidase
790	 48.85	0	869812..872241	-	809	189026026	clpA	TPASS_0801	-	ATP-dependent Clp protease, subunit A
791	 55.15	0	872287..872616	+	109	189026027	-	TPASS_0802	-	hypothetical protein
792	 49.38	0	872630..873838	+	402	189026028	-	TPASS_0803	-	hypothetical protein
793	 47.77	-1	873916..875079	+	387	189026029	ugpC	TPASS_0804	-	sugar ABC transporter, ATP-binding protein
794	 55.53	0	874930..877209	-	759	189026030	rnb	TPASS_0805	-	exoribonuclease II
795	 55.64	0	877206..878702	-	498	189026031	-	TPASS_0806	-	possible protein FemA
796	 55.03	0	878831..879019	+	62	189026032	rpmF	TPASS_0807	-	ribosomal protein L32
797	 48.10	-1	879080..879316	+	78	189026033	acpP	TPASS_0808	-	acyl carrier protein
798	 56.86	0	879313..880077	+	254	189026034	rnc	TPASS_0809	-	ribonuclease III
799	 55.04	0	880108..881019	+	303	189026035	dam	TPASS_0810	-	DNA adenine methyltransferase
800	 44.44	-1	881090..881215	-	41	189026036	-	TPASS_0811	-	hypothetical protein
801	 55.01	0	882626..883912	-	428	189026037	-	TPASS_0813	-	hypothetical protein
802	 53.14	0	884135..885058	+	307	189026038	trxB	TPASS_0814	-	thioredoxin reductase
803	 52.13	0	885180..886163	+	327	189026039	-	TPASS_0815	-	hypothetical protein
804	 52.10	0	886235..886900	-	221	189026040	-	TPASS_0816	-	hypothetical protein
805	 52.35	0	887038..888336	-	432	189026041	eno	TPASS_0817	-	enolase
806	 52.29	0	888333..888485	-	50	189026042	-	TPASS_0818	-	hypothetical protein
807	 51.23	0	888512..889444	-	310	189026043	-	TPASS_0819	-	hypothetical protein
808	 55.64	0	889472..890242	-	256	189026044	-	TPASS_0820	-	hypothetical protein
809	 53.90	0	890338..891144	-	268	189026045	tpn32	TPASS_0821	-	lipoprotein Tpn32
810	 55.30	0	891225..892130	-	301	189026046	-	TPASS_0822	-	hypothetical protein
811	 55.30	0	892218..892604	-	128	189026047	rbo	TPASS_0823	-	desulfoferrodoxin
812	 56.05	0	893001..894893	+	630	189026048	dxs	TPASS_0824	-	deoxyxylulose-5-phosphate synthase
813	 62.90	+2	894890..895075	+	61	189026049	-	TPASS_0825	-	hypothetical protein
814	 51.09	0	895062..895883	+	273	189026050	-	TPASS_0826	-	hypothetical protein
815	 53.44	0	895546..896823	+	425	189026051	-	TPASS_0827	-	hypothetical protein
816	 49.21	0	896820..897197	+	125	189026052	acpS	TPASS_0828	-	holo-acyl-carrier protein synthase
817	 45.76	-1	897194..898078	+	294	189026053	-	TPASS_0829	-	hypothetical protein
818	 50.89	0	898075..898917	+	280	189026054	hisT	TPASS_0830	-	pseudouridylate synthase
819	 50.17	0	898927..900696	-	589	189026055	argS	TPASS_0831	-	arginyl-tRNA synthetase
820	 55.88	0	900719..901534	-	271	189026056	-	TPASS_0832	-	hypothetical protein
821	 56.02	0	901601..902323	+	240	189026057	-	TPASS_0833	-	hypothetical protein
822	 51.88	0	902380..903630	-	416	189026058	tyrS	TPASS_0834	-	tyrosyl-tRNA synthetase
823	 53.37	0	903717..906521	-	934	189026059	-	TPASS_0835	-	possible ankyrin
824	 53.09	0	906662..907486	-	274	189026060	-	TPASS_0836	-	hypothetical protein
825	 57.90	+1	907634..909412	+	592	189026061	thrS	TPASS_0837	-	threonyl-tRNA synthetase
826	 46.55	-1	909461..911125	-	554	189026062	-	TPASS_0838	-	ABC transporter, ATP-binding protein
827	 50.50	0	911200..912207	-	335	189026063	-	TPASS_0839	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.