IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 51.96	0	721835..723085	-	416	189025884	flgL	TPASS_0659	-	flagellar hook-associated protein 3
649	 51.17	0	723119..724996	-	625	189025885	flgK	TPASS_0660	-	flagellar hook-associated protein 1
650	 55.36	0	725102..725614	-	170	189025886	-	TPASS_0661	-	hypothetical protein
651	 53.35	0	725737..726735	-	332	189025887	cbbA	TPASS_0662	-	fructose-bisphosphate aldolase
652	 54.73	0	727002..727730	+	242	189025888	-	TPASS_0663	-	possible outer membrane protein
653	 54.55	0	727727..728452	+	241	189025889	flaA2	TPASS_0664	-	flagellar filament outer layer protein
654	 57.54	+1	728470..729225	-	251	189025890	-	TPASS_0665	-	hypothetical protein
655	 53.74	0	729222..729515	-	97	189025891	-	TPASS_0666	-	hypothetical protein
656	 50.18	0	729559..731226	-	555	189025892	udk	TPASS_0667	-	uridine kinase
657	 44.61	-1	731457..732059	-	200	189025893	-	TPASS_0668	-	hypothetical integral membrane protein
658	 44.38	-1	732056..735568	-	1170	189025894	dnaE	TPASS_0669	-	DNA polymerase III, subunit alpha
659	 54.41	0	735722..736912	-	396	189025895	ddlA	TPASS_0670	-	D-alanine--D-alanine ligase
660	 49.95	0	736914..737948	-	344	189025896	-	TPASS_0671	-	possible sn-1,2-diacylglycerol cholinephosphotransferase
661	 51.91	0	737979..739367	-	462	189025897	glyS	TPASS_0672	-	glycyl-tRNA synthetase
662	 56.32	0	739502..741115	-	537	189025898	gltX	TPASS_0673	-	glutamyl-tRNA synthetase
663	 63.38	+2	741293..741901	+	202	189025899	-	TPASS_0674	-	hypothetical protein
664	 53.95	0	741907..742905	+	332	189025900	-	TPASS_0675	-	hypothetical protein
665	 60.57	+1	742917..743195	-	92	189025901	-	TPASS_0676	-	hypothetical protein
666	 58.95	+1	743217..743825	-	202	189025902	-	TPASS_0677	-	hypothetical protein
667	 59.85	+1	744079..745002	+	307	189025903	-	TPASS_0678	-	hypothetical protein
668	 52.83	0	744999..745316	+	105	189025904	-	TPASS_0679	-	hypothetical protein
669	 52.88	0	745357..746415	-	352	189025905	gcp	TPASS_0680	-	o-sialoglycoprotein endopeptidase
670	 55.82	0	746466..747599	-	377	189025906	alr	TPASS_0681	-	alanine racemase
671	 57.05	0	747628..748230	-	200	189025907	ftsJ	TPASS_0682	-	cell division protein
672	 53.88	0	748323..749417	+	364	189025908	-	TPASS_0683	-	octaprenyl-diphosphate synthase
673	 54.62	0	749710..750921	+	403	189025909	mglB2	TPASS_0684	-	methylgalactoside ABC transporter, periplasmic galactose-binding protein
674	 50.70	0	751041..752531	+	496	189025910	mglA	TPASS_0685	-	methylgalactoside ABC transporter, ATP binding protein
675	 51.94	0	752546..754141	+	531	189025911	mglC	TPASS_0686	-	methylgalactoside ABC transporter, permease protein
676	 42.50	-2	754269..756329	-	686	189025912	recG	TPASS_0687	-	DNA recombinase
677	 38.95	-2	756385..757398	-	337	189025913	mccF	TPASS_0688	-	immunity protein
678	 43.82	-2	757399..758781	-	460	189025914	-	TPASS_0689	-	GTP-binding protein
679	 44.50	-1	758817..759398	-	193	189025915	-	TPASS_0690	-	hypothetical protein
680	 46.77	-1	759391..760149	-	252	189025916	-	TPASS_0691	-	hypothetical protein
681	 51.06	0	760177..761400	-	407	189025917	recA	TPASS_0692	-	protein RecA
682	 56.69	0	761661..762983	-	440	189025918	-	TPASS_0693	-	hypothetical protein
683	 58.55	+1	763143..763820	+	225	189025919	-	TPASS_0694	-	possible 5,10-methenyltetrahydrofolate synthetase
684	 59.87	+1	763908..765701	+	597	189025920	-	TPASS_0695	-	possible phosphoribosylglycinamide formyltransferase
685	 54.48	0	765689..766525	-	278	189025921	-	TPASS_0696	-	possible nicotinamidase
686	 56.49	0	766587..767195	-	202	189025922	-	TPASS_0697	-	hypothetical protein
687	 53.11	0	767226..767771	-	181	189025923	-	TPASS_0698	-	hypothetical protein
688	 54.95	0	767768..767878	-	36	189025924	-	TPASS_0699	-	hypothetical protein
689	 57.00	0	767884..768276	-	130	189025925	-	TPASS_0700	-	hypothetical protein
690	 51.47	0	768414..768617	-	67	189025926	-	TPASS_0701	-	possible DNA-directed RNA polymerase
691	 60.34	+1	768787..769323	-	178	189025927	-	TPASS_0702	-	hypothetical protein
692	 57.71	+1	769338..770018	-	226	189025928	-	TPASS_0703	-	hypothetical protein
693	 53.23	0	770018..772138	-	706	189025929	recJ	TPASS_0704	-	single-stranded-DNA-specific exonuclease
694	 55.56	0	772281..774935	-	884	189025930	pbp2	TPASS_0705	-	penicillin-binding protein
695	 56.42	0	775232..776158	-	308	189025931	-	TPASS_0706	-	hypothetical protein
696	 63.54	+2	776220..776699	-	159	189025932	-	TPASS_0707	-	hypothetical protein
697	 58.33	+1	776765..777280	+	171	189025933	-	TPASS_0708	-	hypothetical protein
698	 50.82	0	777336..778124	+	262	189025934	-	TPASS_0709	-	RNA polymerase sigma-28 factor
699	 52.31	0	778133..780103	+	656	189025935	-	TPASS_0710	-	hypothetical protein
700	 53.05	0	780140..780712	+	190	189025936	-	TPASS_0711	-	hypothetical protein
701	 44.15	-2	780727..781641	-	304	189025937	ylxH1	TPASS_0712	-	ATP-binding protein
702	 42.85	-2	781613..782926	-	437	189025938	flhF	TPASS_0713	-	flagellar-associated GTP-binding protein
703	 42.98	-2	782961..785084	-	707	189025939	flhA	TPASS_0714	-	flagellar biosynthesis protein
704	 41.56	-2	785093..786223	-	376	189025940	flhB	TPASS_0715	-	flagellar biosynthetic protein
705	 43.73	-2	786220..787017	-	265	189025941	fliR	TPASS_0716	-	flagellar biosynthetic protein
706	 47.72	-1	787030..787314	-	94	189025942	fliQ	TPASS_0717	-	flagellar biosynthetic protein
707	 48.53	0	787333..788148	-	271	189025943	fliP	TPASS_0718	-	flagellar biosynthetic protein
708	 55.77	0	788145..788933	-	262	189025944	-	TPASS_0719	-	hypothetical protein
709	 52.53	0	788869..789915	-	348	189025945	fliY	TPASS_0720	-	flagellar motor switch protein
710	 51.21	0	789908..790942	-	344	189025946	fliM	TPASS_0721	-	flagellar motor switch protein
711	 50.46	0	790964..791512	-	182	189025947	fliL	TPASS_0722	-	flagellar protein
712	 55.56	0	791491..791625	-	44	189025948	-	TPASS_0723	-	hypothetical protein
713	 51.88	0	791622..792338	-	238	189025949	motB	TPASS_0724	-	flagellar motor rotation protein
714	 51.28	0	792344..793123	-	259	189025950	motA	TPASS_0725	-	flagellar motor rotation protein
715	 45.45	-1	793139..793336	-	65	189025951	flbD	TPASS_0726	-	flagellar protein
716	 50.65	0	793394..794785	-	463	189025952	flgE	TPASS_0727	-	flagellar hook protein
717	 53.90	0	794856..795317	-	153	189025953	flgD	TPASS_0728	-	flagellar hook assembly scaffolding protein
718	 62.65	+2	795393..797036	-	547	189025954	tap1	TPASS_0729	-	treponemal aqueous protein
719	 55.37	0	797005..798102	+	365	189025955	-	TPASS_0730	-	hypothetical protein
720	 58.93	+1	798122..798832	+	236	189025956	-	TPASS_0731	-	hypothetical protein
721	 62.03	+2	798797..799744	-	315	189025957	folD	TPASS_0732	-	methylenetetrahydrofolate dehydrogenase
722	 59.24	+1	799840..800499	+	219	189025958	-	TPASS_0733	-	hypothetical protein
723	 57.41	+1	800532..801233	-	233	189025959	deoD	TPASS_0734	-	purine nucleoside phosphorylase
724	 55.11	0	801315..802871	-	518	189025960	gltA	TPASS_0735	-	glutamate synthase
725	 51.84	0	802874..803716	-	280	189025961	hydG	TPASS_0736	-	hydrogenase, gamma chain
726	 52.10	0	803950..805260	+	436	189025962	msmE	TPASS_0737	-	sugar ABC transporter, periplasmic binding protein
727	 58.93	+1	805306..805641	-	111	189025963	-	TPASS_0738	-	hypothetical protein
728	 45.86	-1	805638..806834	-	398	189025964	-	TPASS_0739	-	hypothetical protein
729	 55.38	0	806908..807474	-	188	189025965	-	TPASS_0740	-	hypothetical protein
730	 55.28	0	807602..808216	-	204	189025966	-	TPASS_0741	-	hypothetical protein
731	 57.74	+1	808213..809343	-	376	189025967	obg	TPASS_0742	-	GTP-binding protein
732	 54.17	0	809461..809724	-	87	189025968	rpmA	TPASS_0743	-	ribosomal protein L27
733	 56.88	0	809755..810081	-	108	189025969	-	TPASS_0744	-	hypothetical protein
734	 51.89	0	810094..810411	-	105	189025970	rplU	TPASS_0745	-	ribosomal protein L21
735	 51.07	0	810518..813223	-	901	189025971	-	TPASS_0746	-	pyruvate, phosphate dikinase
736	 50.14	0	813233..814267	-	344	189025972	-	TPASS_0747	-	hypothetical protein
737	 48.26	-1	814356..816392	-	678	189025973	cfpA	TPASS_0748	-	cytoplasmic filament protein A
738	 37.84	-2	816370..816591	-	73	189025974	-	TPASS_0749	-	hypothetical protein
739	 52.23	0	816561..817232	+	223	189025975	-	TPASS_0750	-	hypothetical protein
740	 56.58	0	817269..817982	+	237	189025976	-	TPASS_0751	-	hypothetical protein/laminin-binding protein
741	 54.59	0	818120..819262	-	380	189025977	-	TPASS_0752	-	hypothetical protein
742	 47.72	-1	819343..819627	-	94	189025978	-	TPASS_0753	-	hypothetical protein
743	 48.80	0	819624..820994	-	456	189025979	-	TPASS_0754	-	hypothetical protein
744	 48.43	-1	821036..821578	-	180	189025980	ptsN2	TPASS_0755	-	PTS system, nitrogen regulatory IIA component
745	 55.42	0	821778..822737	-	319	189025981	fmt	TPASS_0756	-	methionyl-tRNA formyltransferase
746	 55.42	0	822741..823229	-	162	189025982	def	TPASS_0757	-	polypeptide deformylase
747	 48.57	0	823270..823479	-	69	189025983	rpsU	TPASS_0758	-	ribosomal protein S21
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.