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Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 20 50.02 0 25325..27493 + 722 189025256 - TPASS_0022 - hypothetical protein 21 47.45 -1 27554..28885 + 443 189025257 - TPASS_0023 - sodium- and chloride- dependent transporter 22 45.15 -1 29065..29775 + 236 189025258 - TPASS_0024 - hypothetical protein 23 50.39 0 29854..32925 - 1023 189025259 - TPASS_0025 - hypothetical protein 24 52.20 0 32954..33976 - 340 189025260 fliG1 TPASS_0026 - flagellar motor switch protein 25 51.39 0 34202..35425 + 407 189025261 - TPASS_0027 - possible hemolysin 26 49.05 0 35439..36800 + 453 189025262 - TPASS_0028 - possible hemolysin 27 50.08 0 36908..38185 + 425 189025263 murA TPASS_0029 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 28 50.15 0 38304..39938 + 544 189025264 groEL TPASS_0030 - heat shock protein GroEL 29 56.27 0 40002..40280 + 92 189025265 - TPASS_0031 - hypothetical protein 30 51.06 0 40277..41077 - 266 189025266 - TPASS_0032 - hypothetical protein 31 43.46 -2 41074..41685 - 203 189025267 - TPASS_0033 - hypothetical integral membrane protein 32 48.58 0 41786..42736 - 316 189025268 - TPASS_0034 - ABC transporter, periplasmic binding protein 33 47.84 -1 42934..43650 + 238 189025269 - TPASS_0035 - ABC transporter, ATP-binding protein 34 52.18 0 43650..44450 + 266 189025270 - TPASS_0036 - ABC transporter, permease protein 35 51.51 0 44559..45554 - 331 189025271 - TPASS_0037 - D-specific D-2-hydroxyacid dehydrogenase 36 54.23 0 45651..46703 - 350 189025272 pfoS/R TPASS_0038 - regulatory protein PfoS/R 37 49.06 0 46752..46910 + 52 189025273 - TPASS_0039 - hypothetical protein 38 54.29 0 47588..49381 + 597 189025274 mcp1 TPASS_0040 - methyl-accepting chemotaxis protein 39 61.79 +2 49383..49505 + 40 189025275 - TPASS_0041 - hypothetical protein 40 55.41 0 49502..50434 + 310 189025276 - TPASS_0042 - hypothetical protein 41 51.62 0 50415..52547 + 710 189025277 - TPASS_0043 - possible soluble lytic transglycosylase 42 49.34 0 52587..54479 + 630 189025278 gidA TPASS_0044 - glucose inhibited division protein A 43 43.33 -2 54535..55434 - 299 189025279 - TPASS_0045 - possible adenosine deaminase 44 49.00 0 55796..56497 - 233 189025280 - TPASS_0046 - hypothetical protein 45 46.74 -1 56515..57036 - 173 189025281 - TPASS_0047 - hypothetical protein 46 51.85 0 57042..57473 - 143 189025282 - TPASS_0048 - hypothetical protein 47 53.84 0 57495..58523 - 342 189025283 - TPASS_0049 - hypothetical protein 48 53.37 0 58816..59424 - 202 189025284 - TPASS_0050 - hypothetical protein 49 49.81 0 59575..60630 + 351 189025285 prfA TPASS_0051 - peptide chain release factor 1 50 55.21 0 60600..61646 + 348 189025286 hemK TPASS_0052 - protoporphyrinogen oxidase 51 45.08 -1 61735..62790 - 351 189025287 nrdB TPASS_0053 - ribonucleoside-diphosphate reductase, subunit beta 52 53.12 0 62961..63920 + 319 189025288 - TPASS_0054 - hypothetical protein 53 57.81 +1 64127..64363 + 78 189025289 - TPASS_0055 - hypothetical protein 54 54.04 0 64360..66141 + 593 189025290 oadA TPASS_0056 - oxaloacetate decarboxylase, subunit alpha 55 52.48 0 66153..67562 + 469 189025291 oadB TPASS_0057 - oxaloacetate decarboxylase, subunit beta 56 53.00 0 67637..68953 - 438 189025292 dnaB TPASS_0058 - replicative DNA helicase DnaB 57 53.95 0 68937..69164 - 75 189025293 - TPASS_0059 - hypothetical protein 58 47.98 -1 69170..69640 - 156 189025294 rplI TPASS_0060 - ribosomal protein L9 59 51.33 0 69746..70045 - 99 189025295 rpsR TPASS_0061 - ribosomal protein S18 60 53.86 0 70162..70692 - 176 189025296 ssb TPASS_0062 - single-strand DNA binding protein Ssb 61 53.55 0 70701..70982 - 93 189025297 rpsF TPASS_0063 - ribosomal protein S6 62 49.65 0 71124..71699 + 191 189025298 - TPASS_0064 - hypothetical protein 63 49.83 0 71773..72360 + 195 189025299 - TPASS_0065 - hypothetical protein 64 52.06 0 72344..72658 + 104 189025300 - TPASS_0066 - hypothetical protein 65 50.42 0 72646..73827 + 393 189025301 - TPASS_0067 - hypothetical protein 66 53.18 0 74008..75030 + 340 189025302 - TPASS_0068 - hypothetical protein 67 52.54 0 75086..75616 - 176 189025303 - TPASS_0069 - hypothetical protein 68 52.97 0 75466..75852 - 128 189025304 - TPASS_0070 - hypothetical protein 69 49.87 0 75903..78539 - 878 189025305 clpB TPASS_0071 - ATP-dependent Clp protease, subunit B 70 48.72 0 78743..79015 + 90 189025306 - TPASS_0072 - hypothetical protein 71 52.53 0 79085..80626 - 513 189025307 - TPASS_0073 - hypothetical protein 72 55.11 0 80931..82340 + 469 189025308 y4oP TPASS_0074 - sugar ABC transporter, periplasmic binding protein 73 49.38 0 82459..83349 + 296 189025309 y4oQ TPASS_0075 - sugar ABC transporter, permease protein 74 48.42 -1 83389..84210 + 273 189025310 y4oR TPASS_0076 - sugar ABC transporter, permease protein 75 50.22 0 84251..85867 + 538 189025311 cap TPASS_0077 - capsular polysaccharide biosynthesis protein 76 50.04 0 85872..87110 + 412 189025312 spsC TPASS_0078 - spore coat polysaccharide biosynthesis protein 77 50.16 0 87038..89260 + 740 189025313 - TPASS_0079 - hypothetical protein 78 42.95 -2 89257..89724 + 155 189025314 - TPASS_0080 - quinoline 2-oxidoreductase 79 46.64 -1 89731..90579 + 282 189025315 - TPASS_0081 - hypothetical protein 80 52.69 0 90626..92428 - 600 189025316 fhlA TPASS_0082 - formate hydrogenlyase transcriptional activator FhlA 81 54.18 0 93174..94454 + 426 189025317 - TPASS_0083 - hypothetical protein 82 53.42 0 94434..94667 - 77 189025318 - TPASS_0084 - hypothetical protein 83 49.66 0 94781..95227 - 148 189025319 ptsN1 TPASS_0085 - PTS system, nitrogen regulatory IIA component 84 53.65 0 95308..96252 + 314 189025320 - TPASS_0086 - hypothetical protein 85 57.41 +1 96255..96794 - 179 189025321 - TPASS_0087 - hypothetical protein 86 48.62 0 96778..97392 - 204 189025322 - TPASS_0088 - hypothetical protein 87 45.39 -1 97422..98657 - 411 189025323 - TPASS_0089 - cyclic nucleotide binding protein 88 57.75 +1 98740..99804 - 354 189025324 murB TPASS_0090 - UDP-N-acetylmuramate dehydrogenase 89 54.51 0 99986..101548 + 520 189025325 cysS TPASS_0091 - cysteinyl-tRNA synthetase 90 54.19 0 101619..102107 + 162 189025326 rpoE TPASS_0092 - RNA polymerase sigma-24 factor 91 55.25 0 102091..102738 + 215 189025327 - TPASS_0093 - hypothetical protein 92 51.43 0 102876..103886 + 336 189025328 pta TPASS_0094 - phosphate acetyltransferase 93 56.65 0 103886..105832 + 648 189025329 - TPASS_0095 - hypothetical protein 94 53.44 0 105906..106268 - 120 189025330 - TPASS_0096 - possible dnaK suppressor 95 54.79 0 106438..106656 + 72 189025331 infA TPASS_0097 - translation initiation factor 1 96 60.22 +1 106716..107366 - 216 189025332 - TPASS_0098 - possible heat-shock protein 97 55.56 0 107370..108125 - 251 189025333 smbA TPASS_0099 - uridylate kinase 98 54.89 0 108320..108922 + 200 189025334 - TPASS_0100 - possible thioredoxin 99 55.35 0 108915..109709 + 264 189025335 ccdA TPASS_0101 - cytochrome c biogenesis protein 100 45.09 -1 109747..111720 - 657 189025336 rep TPASS_0102 - Rep helicase, single-stranded DNA-dependent ATPase 101 52.74 0 111785..113608 + 607 189025337 - TPASS_0103 - possible ATP-dependent DNA helicase 102 48.43 -1 113855..115636 + 593 189025338 ushA TPASS_0104 - 5'-nucleotidase 103 44.76 -1 115803..118796 + 997 189025339 polA TPASS_0105 - DNA polymerase I 104 49.18 0 118828..120360 - 510 189025340 - TPASS_0106 - possible carnitine transporter 105 47.02 -1 120341..121918 - 525 189025341 licC TPASS_0107 - protein LicC 106 51.08 0 122272..123657 - 461 189025342 pfk TPASS_0108 - pyrophosphate--fructose 6-phosphate 1-phosphotransferase 107 55.29 0 123759..124637 - 292 189025343 - TPASS_0109 - possible rRNA methylase 108 49.60 0 125178..126911 + 577 189025344 - TPASS_0110 - hypothetical protein 109 47.90 -1 126971..128398 + 475 189025345 rpoN TPASS_0111 - RNA polymerase sigma-54 factor 110 46.86 -1 128395..129747 - 450 189025346 pepC TPASS_0112 - aminopeptidase C 111 46.61 -1 129889..130875 + 328 189025347 hflK TPASS_0113 - Lambda CII stability-governing protein 112 49.60 0 130880..131875 + 331 189025348 hflC TPASS_0114 - Lambda CII stability-governing protein 113 54.32 0 131900..132709 - 269 189025349 thiD TPASS_0115 - phosphomethypyrimidine kinase 114 45.34 -1 132860..134866 + 668 189025350 uvrB TPASS_0116 - excinuclease ABC, subunit B 115 56.09 0 134898..136694 - 598 189025351 tprC TPASS_0117 - protein TprC 116 55.61 0 136774..138039 - 421 189025352 - TPASS_0118 - hypothetical protein 117 55.15 0 138137..138796 - 219 189025353 yaeE TPASS_0119 - amino acid ABC transporter, permease protein 118 51.98 0 138796..139605 - 269 189025354 - TPASS_0120 - amino acid ABC transporter, ATP-binding protein 119 57.21 0 139735..140802 + 355 189025355 - TPASS_0121 - hypothetical protein 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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