version 1.0
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 607 59.14 +1 670914..671192 - 92 189025843 - TPASS_0617 - hypothetical protein 608 60.83 +1 671288..671647 - 119 189025844 - TPASS_0618 - hypothetical protein 609 60.76 +1 671703..672515 - 270 189025845 - TPASS_0619 - hypothetical protein 610 57.32 +1 672512..674341 - 609 189025846 tprI TPASS_0620 - protein TprI 611 56.43 0 674399..676675 - 758 189025847 tprJ TPASS_0621 - protein TprJ 612 55.39 0 676735..678516 - 593 189025848 - TPASS_0622 - hypothetical protein 613 60.13 +1 677933..680272 + 779 189025849 dniR TPASS_0623 - membrane-bound lytic murein transglycosylase D 614 55.00 0 680276..681706 + 476 189025850 - TPASS_0624 - hypothetical protein 615 49.27 0 681706..682458 + 250 189025851 - TPASS_0625 - hypothetical protein 616 49.15 0 682455..683630 + 391 189025852 - TPASS_0626 - possible exonuclease 617 46.56 -1 683627..686770 + 1047 189025853 sbcC TPASS_0627 - exonuclease 618 51.55 0 686767..688248 + 493 189025854 - TPASS_0628 - hypothetical protein 619 56.36 0 688419..689243 + 274 189025855 - TPASS_0629 - hypothetical protein 620 49.67 0 689413..690324 + 303 189025856 cheR TPASS_0630 - chemotaxis protein methyltransferase 621 53.38 0 690371..691582 + 403 189025857 cheB TPASS_0631 - protein-glutamate methylesterase 622 56.61 0 691687..692700 + 337 189025858 trpS TPASS_0632 - tryptophanyl-tRNA synthetase 623 53.20 0 692841..693716 + 291 189025859 msrA TPASS_0633 - protein-methionine-S-oxide reductase 624 51.17 0 693835..696306 + 823 189025860 lig TPASS_0634 - DNA ligase 625 51.10 0 696341..697111 - 256 189025861 - TPASS_0636 - hypothetical protein 626 52.68 0 697149..698099 - 316 189025862 miaA TPASS_0637 - tRNA delta(2)-isopentenylpyrophosphate transferase 627 55.40 0 698323..698757 - 144 189025863 - TPASS_0638 - hypothetical protein 628 55.47 0 699177..701141 + 654 189025864 mcp3 TPASS_0639 - methyl-accepting chemotaxis protein 629 51.54 0 701165..703009 + 614 189025865 mcp4 TPASS_0640 - methyl-accepting chemotaxis protein 630 49.89 0 703027..704355 - 442 189025866 hisS TPASS_0641 - histidyl-tRNA synthetase 631 49.69 0 704496..706256 + 586 189025867 manB TPASS_0642 - phosphomannomutase 632 46.60 -1 706253..706900 + 215 189025868 dnaQ TPASS_0643 - DNA polymerase III, subunit epsilon 633 47.39 -1 706897..708483 - 528 189025869 lysS1 TPASS_0644 - lysyl-tRNA synthetase 634 55.37 0 708514..708690 - 58 189025870 - TPASS_0645 - hypothetical protein 635 49.96 0 708749..710071 - 440 189025871 - TPASS_0646 - hypothetical protein 636 49.41 0 709983..711263 - 426 189025872 serS TPASS_0647 - seryl-tRNA synthetase 637 50.61 0 711313..713361 - 682 189025873 - TPASS_0648 - hypothetical protein 638 47.37 -1 713306..714103 - 265 189025874 tlyC TPASS_0649 - hemolysin 639 49.69 0 714091..714573 - 160 189025875 - TPASS_0650 - hypothetical protein 640 52.20 0 714579..716990 - 803 189025876 - TPASS_0651 - hypothetical integral membrane protein 641 54.04 0 717166..718305 + 379 189025877 potA TPASS_0652 - spermidine/putrescine ABC transporter, ATP-binding protein 642 55.11 0 718302..719201 + 299 189025878 potB TPASS_0653 - spermidine/putrescine ABC transporter, permease protein 643 50.06 0 719194..720012 + 272 189025879 potC TPASS_0654 - spermidine/putrescine ABC transporter, permease protein 644 47.56 -1 720048..721094 + 348 189025880 potD TPASS_0655 - spermidine/putrescine ABC transporter, periplasmic binding protein 645 55.88 0 721063..721164 + 33 189025881 - TPASS_0656 - hypothetical protein 646 49.10 0 721149..721370 - 73 189025882 csrA TPASS_0657 - carbon storage regulator 647 48.57 0 721364..721816 - 150 189025883 - TPASS_0658 - possible transmembrane protein 648 51.96 0 721835..723085 - 416 189025884 flgL TPASS_0659 - flagellar hook-associated protein 3 649 51.17 0 723119..724996 - 625 189025885 flgK TPASS_0660 - flagellar hook-associated protein 1 650 55.36 0 725102..725614 - 170 189025886 - TPASS_0661 - hypothetical protein 651 53.35 0 725737..726735 - 332 189025887 cbbA TPASS_0662 - fructose-bisphosphate aldolase 652 54.73 0 727002..727730 + 242 189025888 - TPASS_0663 - possible outer membrane protein 653 54.55 0 727727..728452 + 241 189025889 flaA2 TPASS_0664 - flagellar filament outer layer protein 654 57.54 +1 728470..729225 - 251 189025890 - TPASS_0665 - hypothetical protein 655 53.74 0 729222..729515 - 97 189025891 - TPASS_0666 - hypothetical protein 656 50.18 0 729559..731226 - 555 189025892 udk TPASS_0667 - uridine kinase 657 44.61 -1 731457..732059 - 200 189025893 - TPASS_0668 - hypothetical integral membrane protein 658 44.38 -1 732056..735568 - 1170 189025894 dnaE TPASS_0669 - DNA polymerase III, subunit alpha 659 54.41 0 735722..736912 - 396 189025895 ddlA TPASS_0670 - D-alanine--D-alanine ligase 660 49.95 0 736914..737948 - 344 189025896 - TPASS_0671 - possible sn-1,2-diacylglycerol cholinephosphotransferase 661 51.91 0 737979..739367 - 462 189025897 glyS TPASS_0672 - glycyl-tRNA synthetase 662 56.32 0 739502..741115 - 537 189025898 gltX TPASS_0673 - glutamyl-tRNA synthetase 663 63.38 +2 741293..741901 + 202 189025899 - TPASS_0674 - hypothetical protein 664 53.95 0 741907..742905 + 332 189025900 - TPASS_0675 - hypothetical protein 665 60.57 +1 742917..743195 - 92 189025901 - TPASS_0676 - hypothetical protein 666 58.95 +1 743217..743825 - 202 189025902 - TPASS_0677 - hypothetical protein 667 59.85 +1 744079..745002 + 307 189025903 - TPASS_0678 - hypothetical protein 668 52.83 0 744999..745316 + 105 189025904 - TPASS_0679 - hypothetical protein 669 52.88 0 745357..746415 - 352 189025905 gcp TPASS_0680 - o-sialoglycoprotein endopeptidase 670 55.82 0 746466..747599 - 377 189025906 alr TPASS_0681 - alanine racemase 671 57.05 0 747628..748230 - 200 189025907 ftsJ TPASS_0682 - cell division protein 672 53.88 0 748323..749417 + 364 189025908 - TPASS_0683 - octaprenyl-diphosphate synthase 673 54.62 0 749710..750921 + 403 189025909 mglB2 TPASS_0684 - methylgalactoside ABC transporter, periplasmic galactose-binding protein 674 50.70 0 751041..752531 + 496 189025910 mglA TPASS_0685 - methylgalactoside ABC transporter, ATP binding protein 675 51.94 0 752546..754141 + 531 189025911 mglC TPASS_0686 - methylgalactoside ABC transporter, permease protein 676 42.50 -2 754269..756329 - 686 189025912 recG TPASS_0687 - DNA recombinase 677 38.95 -2 756385..757398 - 337 189025913 mccF TPASS_0688 - immunity protein 678 43.82 -2 757399..758781 - 460 189025914 - TPASS_0689 - GTP-binding protein 679 44.50 -1 758817..759398 - 193 189025915 - TPASS_0690 - hypothetical protein 680 46.77 -1 759391..760149 - 252 189025916 - TPASS_0691 - hypothetical protein 681 51.06 0 760177..761400 - 407 189025917 recA TPASS_0692 - protein RecA 682 56.69 0 761661..762983 - 440 189025918 - TPASS_0693 - hypothetical protein 683 58.55 +1 763143..763820 + 225 189025919 - TPASS_0694 - possible 5,10-methenyltetrahydrofolate synthetase 684 59.87 +1 763908..765701 + 597 189025920 - TPASS_0695 - possible phosphoribosylglycinamide formyltransferase 685 54.48 0 765689..766525 - 278 189025921 - TPASS_0696 - possible nicotinamidase 686 56.49 0 766587..767195 - 202 189025922 - TPASS_0697 - hypothetical protein 687 53.11 0 767226..767771 - 181 189025923 - TPASS_0698 - hypothetical protein 688 54.95 0 767768..767878 - 36 189025924 - TPASS_0699 - hypothetical protein 689 57.00 0 767884..768276 - 130 189025925 - TPASS_0700 - hypothetical protein 690 51.47 0 768414..768617 - 67 189025926 - TPASS_0701 - possible DNA-directed RNA polymerase 691 60.34 +1 768787..769323 - 178 189025927 - TPASS_0702 - hypothetical protein 692 57.71 +1 769338..770018 - 226 189025928 - TPASS_0703 - hypothetical protein 693 53.23 0 770018..772138 - 706 189025929 recJ TPASS_0704 - single-stranded-DNA-specific exonuclease 694 55.56 0 772281..774935 - 884 189025930 pbp2 TPASS_0705 - penicillin-binding protein 695 56.42 0 775232..776158 - 308 189025931 - TPASS_0706 - hypothetical protein 696 63.54 +2 776220..776699 - 159 189025932 - TPASS_0707 - hypothetical protein 697 58.33 +1 776765..777280 + 171 189025933 - TPASS_0708 - hypothetical protein 698 50.82 0 777336..778124 + 262 189025934 - TPASS_0709 - RNA polymerase sigma-28 factor 699 52.31 0 778133..780103 + 656 189025935 - TPASS_0710 - hypothetical protein 700 53.05 0 780140..780712 + 190 189025936 - TPASS_0711 - hypothetical protein 701 44.15 -2 780727..781641 - 304 189025937 ylxH1 TPASS_0712 - ATP-binding protein 702 42.85 -2 781613..782926 - 437 189025938 flhF TPASS_0713 - flagellar-associated GTP-binding protein 703 42.98 -2 782961..785084 - 707 189025939 flhA TPASS_0714 - flagellar biosynthesis protein 704 41.56 -2 785093..786223 - 376 189025940 flhB TPASS_0715 - flagellar biosynthetic protein 705 43.73 -2 786220..787017 - 265 189025941 fliR TPASS_0716 - flagellar biosynthetic protein 706 47.72 -1 787030..787314 - 94 189025942 fliQ TPASS_0717 - flagellar biosynthetic protein 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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