IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
591	 52.52	0	654374..655525	-	383	189025827	dxr	TPASS_0601	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
592	 48.50	-1	655501..656364	-	287	189025828	cdsA	TPASS_0602	-	phosphatidate cytidylyltransferase
593	 52.98	0	656361..657047	-	228	189025829	-	TPASS_0603	-	hypothetical protein
594	 52.90	0	657053..657604	-	183	189025830	-	TPASS_0604	-	ribosome recycling factor
595	 55.90	0	657708..658580	-	290	189025831	tsf	TPASS_0605	-	translation elongation factor TS
596	 50.00	0	658671..659546	-	291	189025832	rpsB	TPASS_0606	-	ribosomal protein S2
597	 54.42	0	659515..659661	-	48	189025833	-	TPASS_0607	-	hypothetical protein
598	 58.02	+1	659911..660801	-	296	189025834	-	TPASS_0608	-	hypothetical protein
599	 59.29	+1	661119..662690	+	523	189025835	asnS	TPASS_0609	-	asparaginyl-tRNA synthetase
600	 54.85	0	662700..664781	+	693	189025836	tprH	TPASS_0610	-	protein TprH
601	 54.74	0	664923..665702	+	259	189025837	-	TPASS_0611	-	ABC transporter, ATP-binding protein
602	 52.01	0	665783..667222	+	479	189025838	-	TPASS_0612	-	hypothetical protein
603	 52.83	0	667249..668397	+	382	189025839	-	TPASS_0613	-	hypothetical protein
604	 54.40	0	668394..669608	+	404	189025840	nifS1	TPASS_0614	-	nitrogen fixation protein
605	 54.05	0	669659..670102	+	147	189025841	nifU	TPASS_0615	-	nitrogen fixation protein
606	 55.16	0	670123..670887	+	254	189025842	rpiA	TPASS_0616	-	ribose 5-phosphate isomerase
607	 59.14	+1	670914..671192	-	92	189025843	-	TPASS_0617	-	hypothetical protein
608	 60.83	+1	671288..671647	-	119	189025844	-	TPASS_0618	-	hypothetical protein
609	 60.76	+1	671703..672515	-	270	189025845	-	TPASS_0619	-	hypothetical protein
610	 57.32	+1	672512..674341	-	609	189025846	tprI	TPASS_0620	-	protein TprI
611	 56.43	0	674399..676675	-	758	189025847	tprJ	TPASS_0621	-	protein TprJ
612	 55.39	0	676735..678516	-	593	189025848	-	TPASS_0622	-	hypothetical protein
613	 60.13	+1	677933..680272	+	779	189025849	dniR	TPASS_0623	-	membrane-bound lytic murein transglycosylase D
614	 55.00	0	680276..681706	+	476	189025850	-	TPASS_0624	-	hypothetical protein
615	 49.27	0	681706..682458	+	250	189025851	-	TPASS_0625	-	hypothetical protein
616	 49.15	0	682455..683630	+	391	189025852	-	TPASS_0626	-	possible exonuclease
617	 46.56	-1	683627..686770	+	1047	189025853	sbcC	TPASS_0627	-	exonuclease
618	 51.55	0	686767..688248	+	493	189025854	-	TPASS_0628	-	hypothetical protein
619	 56.36	0	688419..689243	+	274	189025855	-	TPASS_0629	-	hypothetical protein
620	 49.67	0	689413..690324	+	303	189025856	cheR	TPASS_0630	-	chemotaxis protein methyltransferase
621	 53.38	0	690371..691582	+	403	189025857	cheB	TPASS_0631	-	protein-glutamate methylesterase
622	 56.61	0	691687..692700	+	337	189025858	trpS	TPASS_0632	-	tryptophanyl-tRNA synthetase
623	 53.20	0	692841..693716	+	291	189025859	msrA	TPASS_0633	-	protein-methionine-S-oxide reductase
624	 51.17	0	693835..696306	+	823	189025860	lig	TPASS_0634	-	DNA ligase
625	 51.10	0	696341..697111	-	256	189025861	-	TPASS_0636	-	hypothetical protein
626	 52.68	0	697149..698099	-	316	189025862	miaA	TPASS_0637	-	tRNA delta(2)-isopentenylpyrophosphate transferase
627	 55.40	0	698323..698757	-	144	189025863	-	TPASS_0638	-	hypothetical protein
628	 55.47	0	699177..701141	+	654	189025864	mcp3	TPASS_0639	-	methyl-accepting chemotaxis protein
629	 51.54	0	701165..703009	+	614	189025865	mcp4	TPASS_0640	-	methyl-accepting chemotaxis protein
630	 49.89	0	703027..704355	-	442	189025866	hisS	TPASS_0641	-	histidyl-tRNA synthetase
631	 49.69	0	704496..706256	+	586	189025867	manB	TPASS_0642	-	phosphomannomutase
632	 46.60	-1	706253..706900	+	215	189025868	dnaQ	TPASS_0643	-	DNA polymerase III, subunit epsilon
633	 47.39	-1	706897..708483	-	528	189025869	lysS1	TPASS_0644	-	lysyl-tRNA synthetase
634	 55.37	0	708514..708690	-	58	189025870	-	TPASS_0645	-	hypothetical protein
635	 49.96	0	708749..710071	-	440	189025871	-	TPASS_0646	-	hypothetical protein
636	 49.41	0	709983..711263	-	426	189025872	serS	TPASS_0647	-	seryl-tRNA synthetase
637	 50.61	0	711313..713361	-	682	189025873	-	TPASS_0648	-	hypothetical protein
638	 47.37	-1	713306..714103	-	265	189025874	tlyC	TPASS_0649	-	hemolysin
639	 49.69	0	714091..714573	-	160	189025875	-	TPASS_0650	-	hypothetical protein
640	 52.20	0	714579..716990	-	803	189025876	-	TPASS_0651	-	hypothetical integral membrane protein
641	 54.04	0	717166..718305	+	379	189025877	potA	TPASS_0652	-	spermidine/putrescine ABC transporter, ATP-binding protein
642	 55.11	0	718302..719201	+	299	189025878	potB	TPASS_0653	-	spermidine/putrescine ABC transporter, permease protein
643	 50.06	0	719194..720012	+	272	189025879	potC	TPASS_0654	-	spermidine/putrescine ABC transporter, permease protein
644	 47.56	-1	720048..721094	+	348	189025880	potD	TPASS_0655	-	spermidine/putrescine ABC transporter, periplasmic binding protein
645	 55.88	0	721063..721164	+	33	189025881	-	TPASS_0656	-	hypothetical protein
646	 49.10	0	721149..721370	-	73	189025882	csrA	TPASS_0657	-	carbon storage regulator
647	 48.57	0	721364..721816	-	150	189025883	-	TPASS_0658	-	possible transmembrane protein
648	 51.96	0	721835..723085	-	416	189025884	flgL	TPASS_0659	-	flagellar hook-associated protein 3
649	 51.17	0	723119..724996	-	625	189025885	flgK	TPASS_0660	-	flagellar hook-associated protein 1
650	 55.36	0	725102..725614	-	170	189025886	-	TPASS_0661	-	hypothetical protein
651	 53.35	0	725737..726735	-	332	189025887	cbbA	TPASS_0662	-	fructose-bisphosphate aldolase
652	 54.73	0	727002..727730	+	242	189025888	-	TPASS_0663	-	possible outer membrane protein
653	 54.55	0	727727..728452	+	241	189025889	flaA2	TPASS_0664	-	flagellar filament outer layer protein
654	 57.54	+1	728470..729225	-	251	189025890	-	TPASS_0665	-	hypothetical protein
655	 53.74	0	729222..729515	-	97	189025891	-	TPASS_0666	-	hypothetical protein
656	 50.18	0	729559..731226	-	555	189025892	udk	TPASS_0667	-	uridine kinase
657	 44.61	-1	731457..732059	-	200	189025893	-	TPASS_0668	-	hypothetical integral membrane protein
658	 44.38	-1	732056..735568	-	1170	189025894	dnaE	TPASS_0669	-	DNA polymerase III, subunit alpha
659	 54.41	0	735722..736912	-	396	189025895	ddlA	TPASS_0670	-	D-alanine--D-alanine ligase
660	 49.95	0	736914..737948	-	344	189025896	-	TPASS_0671	-	possible sn-1,2-diacylglycerol cholinephosphotransferase
661	 51.91	0	737979..739367	-	462	189025897	glyS	TPASS_0672	-	glycyl-tRNA synthetase
662	 56.32	0	739502..741115	-	537	189025898	gltX	TPASS_0673	-	glutamyl-tRNA synthetase
663	 63.38	+2	741293..741901	+	202	189025899	-	TPASS_0674	-	hypothetical protein
664	 53.95	0	741907..742905	+	332	189025900	-	TPASS_0675	-	hypothetical protein
665	 60.57	+1	742917..743195	-	92	189025901	-	TPASS_0676	-	hypothetical protein
666	 58.95	+1	743217..743825	-	202	189025902	-	TPASS_0677	-	hypothetical protein
667	 59.85	+1	744079..745002	+	307	189025903	-	TPASS_0678	-	hypothetical protein
668	 52.83	0	744999..745316	+	105	189025904	-	TPASS_0679	-	hypothetical protein
669	 52.88	0	745357..746415	-	352	189025905	gcp	TPASS_0680	-	o-sialoglycoprotein endopeptidase
670	 55.82	0	746466..747599	-	377	189025906	alr	TPASS_0681	-	alanine racemase
671	 57.05	0	747628..748230	-	200	189025907	ftsJ	TPASS_0682	-	cell division protein
672	 53.88	0	748323..749417	+	364	189025908	-	TPASS_0683	-	octaprenyl-diphosphate synthase
673	 54.62	0	749710..750921	+	403	189025909	mglB2	TPASS_0684	-	methylgalactoside ABC transporter, periplasmic galactose-binding protein
674	 50.70	0	751041..752531	+	496	189025910	mglA	TPASS_0685	-	methylgalactoside ABC transporter, ATP binding protein
675	 51.94	0	752546..754141	+	531	189025911	mglC	TPASS_0686	-	methylgalactoside ABC transporter, permease protein
676	 42.50	-2	754269..756329	-	686	189025912	recG	TPASS_0687	-	DNA recombinase
677	 38.95	-2	756385..757398	-	337	189025913	mccF	TPASS_0688	-	immunity protein
678	 43.82	-2	757399..758781	-	460	189025914	-	TPASS_0689	-	GTP-binding protein
679	 44.50	-1	758817..759398	-	193	189025915	-	TPASS_0690	-	hypothetical protein
680	 46.77	-1	759391..760149	-	252	189025916	-	TPASS_0691	-	hypothetical protein
681	 51.06	0	760177..761400	-	407	189025917	recA	TPASS_0692	-	protein RecA
682	 56.69	0	761661..762983	-	440	189025918	-	TPASS_0693	-	hypothetical protein
683	 58.55	+1	763143..763820	+	225	189025919	-	TPASS_0694	-	possible 5,10-methenyltetrahydrofolate synthetase
684	 59.87	+1	763908..765701	+	597	189025920	-	TPASS_0695	-	possible phosphoribosylglycinamide formyltransferase
685	 54.48	0	765689..766525	-	278	189025921	-	TPASS_0696	-	possible nicotinamidase
686	 56.49	0	766587..767195	-	202	189025922	-	TPASS_0697	-	hypothetical protein
687	 53.11	0	767226..767771	-	181	189025923	-	TPASS_0698	-	hypothetical protein
688	 54.95	0	767768..767878	-	36	189025924	-	TPASS_0699	-	hypothetical protein
689	 57.00	0	767884..768276	-	130	189025925	-	TPASS_0700	-	hypothetical protein
690	 51.47	0	768414..768617	-	67	189025926	-	TPASS_0701	-	possible DNA-directed RNA polymerase
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.