version 1.0
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 570 52.77 0 630985..631761 + 258 189025806 - TPASS_0579 - hypothetical protein 571 46.90 -1 631754..633043 + 429 189025807 - TPASS_0580 - hypothetical integral membrane protein 572 46.70 -1 633036..633716 + 226 189025808 - TPASS_0581 - ABC transporter, ATP-binding protein 573 50.81 0 633713..635200 + 495 189025809 - TPASS_0582 - hypothetical integral membrane protein 574 52.38 0 635184..635309 - 41 189025810 - TPASS_0583 - hypothetical protein 575 48.65 0 635296..636705 + 469 189025811 - TPASS_0584 - hypothetical protein 576 54.50 0 636698..638341 + 547 189025812 oppA TPASS_0585 - oligopeptide ABC transporter, periplasmic binding protein 577 53.55 0 638430..641066 + 878 189025813 leuS TPASS_0586 - leucyl-tRNA synthetase 578 54.55 0 641046..641276 - 76 189025814 - TPASS_0587 - hypothetical protein 579 48.24 -1 641303..642067 - 254 189025815 - TPASS_0588 - hypothetical protein 580 49.81 0 642155..642421 - 88 189025816 ptsH TPASS_0589 - phosphocarrier protein HPr 581 49.57 0 642393..642509 - 38 189025817 - TPASS_0590 - hypothetical protein 582 48.12 -1 642466..643425 - 319 189025818 ptsK TPASS_0591 - HPr kinase 583 52.10 0 644188..645690 + 500 189025819 - TPASS_0592 - hypothetical protein 584 55.11 0 645627..647660 + 677 189025820 - TPASS_0593 - hypothetical protein 585 52.22 0 647747..648355 - 202 189025821 - TPASS_0594 - hypothetical protein 586 52.04 0 648383..649018 - 211 189025822 adk TPASS_0595 - adenylate kinase 587 56.33 0 649042..650154 - 370 189025823 pcnB TPASS_0596 - polynucleotide adenylyltransferase 588 50.82 0 650262..652325 - 687 189025824 - TPASS_0598 - hypothetical protein 589 48.10 -1 652362..653018 - 218 189025825 - TPASS_0599 - hypothetical protein 590 48.26 -1 653025..654377 - 450 189025826 - TPASS_0600 - possible zinc protease 591 52.52 0 654374..655525 - 383 189025827 dxr TPASS_0601 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 592 48.50 -1 655501..656364 - 287 189025828 cdsA TPASS_0602 - phosphatidate cytidylyltransferase 593 52.98 0 656361..657047 - 228 189025829 - TPASS_0603 - hypothetical protein 594 52.90 0 657053..657604 - 183 189025830 - TPASS_0604 - ribosome recycling factor 595 55.90 0 657708..658580 - 290 189025831 tsf TPASS_0605 - translation elongation factor TS 596 50.00 0 658671..659546 - 291 189025832 rpsB TPASS_0606 - ribosomal protein S2 597 54.42 0 659515..659661 - 48 189025833 - TPASS_0607 - hypothetical protein 598 58.02 +1 659911..660801 - 296 189025834 - TPASS_0608 - hypothetical protein 599 59.29 +1 661119..662690 + 523 189025835 asnS TPASS_0609 - asparaginyl-tRNA synthetase 600 54.85 0 662700..664781 + 693 189025836 tprH TPASS_0610 - protein TprH 601 54.74 0 664923..665702 + 259 189025837 - TPASS_0611 - ABC transporter, ATP-binding protein 602 52.01 0 665783..667222 + 479 189025838 - TPASS_0612 - hypothetical protein 603 52.83 0 667249..668397 + 382 189025839 - TPASS_0613 - hypothetical protein 604 54.40 0 668394..669608 + 404 189025840 nifS1 TPASS_0614 - nitrogen fixation protein 605 54.05 0 669659..670102 + 147 189025841 nifU TPASS_0615 - nitrogen fixation protein 606 55.16 0 670123..670887 + 254 189025842 rpiA TPASS_0616 - ribose 5-phosphate isomerase 607 59.14 +1 670914..671192 - 92 189025843 - TPASS_0617 - hypothetical protein 608 60.83 +1 671288..671647 - 119 189025844 - TPASS_0618 - hypothetical protein 609 60.76 +1 671703..672515 - 270 189025845 - TPASS_0619 - hypothetical protein 610 57.32 +1 672512..674341 - 609 189025846 tprI TPASS_0620 - protein TprI 611 56.43 0 674399..676675 - 758 189025847 tprJ TPASS_0621 - protein TprJ 612 55.39 0 676735..678516 - 593 189025848 - TPASS_0622 - hypothetical protein 613 60.13 +1 677933..680272 + 779 189025849 dniR TPASS_0623 - membrane-bound lytic murein transglycosylase D 614 55.00 0 680276..681706 + 476 189025850 - TPASS_0624 - hypothetical protein 615 49.27 0 681706..682458 + 250 189025851 - TPASS_0625 - hypothetical protein 616 49.15 0 682455..683630 + 391 189025852 - TPASS_0626 - possible exonuclease 617 46.56 -1 683627..686770 + 1047 189025853 sbcC TPASS_0627 - exonuclease 618 51.55 0 686767..688248 + 493 189025854 - TPASS_0628 - hypothetical protein 619 56.36 0 688419..689243 + 274 189025855 - TPASS_0629 - hypothetical protein 620 49.67 0 689413..690324 + 303 189025856 cheR TPASS_0630 - chemotaxis protein methyltransferase 621 53.38 0 690371..691582 + 403 189025857 cheB TPASS_0631 - protein-glutamate methylesterase 622 56.61 0 691687..692700 + 337 189025858 trpS TPASS_0632 - tryptophanyl-tRNA synthetase 623 53.20 0 692841..693716 + 291 189025859 msrA TPASS_0633 - protein-methionine-S-oxide reductase 624 51.17 0 693835..696306 + 823 189025860 lig TPASS_0634 - DNA ligase 625 51.10 0 696341..697111 - 256 189025861 - TPASS_0636 - hypothetical protein 626 52.68 0 697149..698099 - 316 189025862 miaA TPASS_0637 - tRNA delta(2)-isopentenylpyrophosphate transferase 627 55.40 0 698323..698757 - 144 189025863 - TPASS_0638 - hypothetical protein 628 55.47 0 699177..701141 + 654 189025864 mcp3 TPASS_0639 - methyl-accepting chemotaxis protein 629 51.54 0 701165..703009 + 614 189025865 mcp4 TPASS_0640 - methyl-accepting chemotaxis protein 630 49.89 0 703027..704355 - 442 189025866 hisS TPASS_0641 - histidyl-tRNA synthetase 631 49.69 0 704496..706256 + 586 189025867 manB TPASS_0642 - phosphomannomutase 632 46.60 -1 706253..706900 + 215 189025868 dnaQ TPASS_0643 - DNA polymerase III, subunit epsilon 633 47.39 -1 706897..708483 - 528 189025869 lysS1 TPASS_0644 - lysyl-tRNA synthetase 634 55.37 0 708514..708690 - 58 189025870 - TPASS_0645 - hypothetical protein 635 49.96 0 708749..710071 - 440 189025871 - TPASS_0646 - hypothetical protein 636 49.41 0 709983..711263 - 426 189025872 serS TPASS_0647 - seryl-tRNA synthetase 637 50.61 0 711313..713361 - 682 189025873 - TPASS_0648 - hypothetical protein 638 47.37 -1 713306..714103 - 265 189025874 tlyC TPASS_0649 - hemolysin 639 49.69 0 714091..714573 - 160 189025875 - TPASS_0650 - hypothetical protein 640 52.20 0 714579..716990 - 803 189025876 - TPASS_0651 - hypothetical integral membrane protein 641 54.04 0 717166..718305 + 379 189025877 potA TPASS_0652 - spermidine/putrescine ABC transporter, ATP-binding protein 642 55.11 0 718302..719201 + 299 189025878 potB TPASS_0653 - spermidine/putrescine ABC transporter, permease protein 643 50.06 0 719194..720012 + 272 189025879 potC TPASS_0654 - spermidine/putrescine ABC transporter, permease protein 644 47.56 -1 720048..721094 + 348 189025880 potD TPASS_0655 - spermidine/putrescine ABC transporter, periplasmic binding protein 645 55.88 0 721063..721164 + 33 189025881 - TPASS_0656 - hypothetical protein 646 49.10 0 721149..721370 - 73 189025882 csrA TPASS_0657 - carbon storage regulator 647 48.57 0 721364..721816 - 150 189025883 - TPASS_0658 - possible transmembrane protein 648 51.96 0 721835..723085 - 416 189025884 flgL TPASS_0659 - flagellar hook-associated protein 3 649 51.17 0 723119..724996 - 625 189025885 flgK TPASS_0660 - flagellar hook-associated protein 1 650 55.36 0 725102..725614 - 170 189025886 - TPASS_0661 - hypothetical protein 651 53.35 0 725737..726735 - 332 189025887 cbbA TPASS_0662 - fructose-bisphosphate aldolase 652 54.73 0 727002..727730 + 242 189025888 - TPASS_0663 - possible outer membrane protein 653 54.55 0 727727..728452 + 241 189025889 flaA2 TPASS_0664 - flagellar filament outer layer protein 654 57.54 +1 728470..729225 - 251 189025890 - TPASS_0665 - hypothetical protein 655 53.74 0 729222..729515 - 97 189025891 - TPASS_0666 - hypothetical protein 656 50.18 0 729559..731226 - 555 189025892 udk TPASS_0667 - uridine kinase 657 44.61 -1 731457..732059 - 200 189025893 - TPASS_0668 - hypothetical integral membrane protein 658 44.38 -1 732056..735568 - 1170 189025894 dnaE TPASS_0669 - DNA polymerase III, subunit alpha 659 54.41 0 735722..736912 - 396 189025895 ddlA TPASS_0670 - D-alanine--D-alanine ligase 660 49.95 0 736914..737948 - 344 189025896 - TPASS_0671 - possible sn-1,2-diacylglycerol cholinephosphotransferase 661 51.91 0 737979..739367 - 462 189025897 glyS TPASS_0672 - glycyl-tRNA synthetase 662 56.32 0 739502..741115 - 537 189025898 gltX TPASS_0673 - glutamyl-tRNA synthetase 663 63.38 +2 741293..741901 + 202 189025899 - TPASS_0674 - hypothetical protein 664 53.95 0 741907..742905 + 332 189025900 - TPASS_0675 - hypothetical protein 665 60.57 +1 742917..743195 - 92 189025901 - TPASS_0676 - hypothetical protein 666 58.95 +1 743217..743825 - 202 189025902 - TPASS_0677 - hypothetical protein 667 59.85 +1 744079..745002 + 307 189025903 - TPASS_0678 - hypothetical protein 668 52.83 0 744999..745316 + 105 189025904 - TPASS_0679 - hypothetical protein 669 52.88 0 745357..746415 - 352 189025905 gcp TPASS_0680 - o-sialoglycoprotein endopeptidase 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0