IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
488	 48.97	0	529323..531158	+	611	189025724	rpoD	TPASS_0493	-	RNA polymerase sigma-70 factor
489	 52.07	0	531168..531989	+	273	189025725	-	TPASS_0494	-	hypothetical protein
490	 53.33	0	532319..533308	+	329	189025726	-	TPASS_0496	-	hypothetical protein
491	 50.82	0	533321..534355	+	344	189025727	mreB	TPASS_0497	-	rod shape-determining protein
492	 48.15	-1	534360..535223	+	287	189025728	mreC	TPASS_0498	-	rod shape-determining protein
493	 43.20	-2	535220..535726	+	168	189025729	mreD	TPASS_0499	-	rod shape-determining protein
494	 48.37	-1	535727..537601	+	624	189025730	pbp1	TPASS_0500	-	penicillin-binding protein
495	 46.70	-1	537598..538899	+	433	189025731	rodA	TPASS_0501	-	rod shape-determining protein
496	 50.61	0	538925..539821	+	298	189025732	-	TPASS_0502	-	hypothetical protein
497	 53.90	0	539800..540363	+	187	189025733	-	TPASS_0503	-	hypothetical protein
498	 60.28	+1	540345..540485	+	46	189025734	-	TPASS_0504	-	hypothetical protein
499	 53.63	0	540494..541828	-	444	189025735	hxk	TPASS_0505	-	hexokinase
500	 54.25	0	542563..543891	+	442	189025736	tig	TPASS_0506	-	trigger factor
501	 52.78	0	543884..544495	+	203	189025737	clpP1	TPASS_0507	-	ATP-dependent Clp protease proteolytic component
502	 48.56	0	544482..545729	+	415	189025738	clpX	TPASS_0508	-	ATP-dependent Clp protease subunit X
503	 51.32	0	545826..546392	+	188	189025739	ahpC	TPASS_0509	-	alkyl hydroperoxide reductase
504	 52.20	0	546573..548390	-	605	189025740	lepA	TPASS_0510	-	GTP-binding membrane protein
505	 49.76	0	548433..549059	+	208	189025741	carD	TPASS_0511	-	transcription factor
506	 57.69	+1	549056..550303	+	415	189025742	-	TPASS_0512	-	hypothetical protein
507	 50.96	0	550377..551777	+	466	189025743	trkA	TPASS_0513	-	K+ transport protein
508	 47.31	-1	551891..554773	+	960	189025744	uvrA	TPASS_0514	-	excinuclease ABC, subunit A
509	 42.20	-2	554770..557745	+	991	189025745	-	TPASS_0515	-	hypothetical protein
510	 41.87	-2	557759..559339	-	526	189025746	mviN	TPASS_0516	-	virulence factor
511	 46.87	-1	559336..559926	-	196	189025747	ruvC	TPASS_0517	-	Holliday junction nuclease, subunit C
512	 49.21	0	559908..560600	-	230	189025748	-	TPASS_0518	-	hypothetical protein
513	 42.99	-2	560597..561973	-	458	189025749	atoC	TPASS_0519	-	response regulatory protein
514	 49.61	0	563168..564439	-	423	189025750	-	TPASS_0521	-	possible DNA polymerase III, gamma and tau subunits
515	 45.62	-1	564450..564929	-	159	189025751	-	TPASS_0522	-	hypothetical protein
516	 52.90	0	564926..566080	-	384	189025752	murG	TPASS_0523	-	UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
517	 52.04	0	566084..568729	-	881	189025753	lon2	TPASS_0524	-	ATP-dependent protease LA
518	 49.82	0	568865..569428	+	187	189025754	efp	TPASS_0525	-	translation elongation factor P
519	 49.48	0	569576..571582	+	668	189025755	hrpA	TPASS_0526	-	ATP-dependent helicase
520	 52.70	0	571630..572259	-	209	189025756	atpD2	TPASS_0527	-	V-type ATPase, subunit D
521	 51.98	0	572354..573796	-	480	189025757	atpB2	TPASS_0528	-	V-type ATPase, subunit B
522	 54.68	0	573793..575610	-	605	189025758	atpA2	TPASS_0529	-	V-type ATPase, subunit A
523	 55.50	0	575607..576233	-	208	189025759	-	TPASS_0530	-	possible V-type ATPase, subunit E
524	 57.23	0	576239..576577	-	112	189025760	-	TPASS_0531	-	possible V-type ATPase, subunit F
525	 53.41	0	577197..578561	-	454	189025761	atpI2	TPASS_0533	-	V-type ATPase, subunit I
526	 54.87	0	578554..579579	-	341	189025762	-	TPASS_0534	-	hypothetical protein
527	 60.09	+1	579583..579795	-	70	189025763	-	TPASS_0535	-	hypothetical protein
528	 57.96	+1	579936..580337	-	133	189025764	-	TPASS_0536	-	hypothetical protein
529	 56.27	0	580487..581236	-	249	189025765	tpi	TPASS_0537	-	triosephosphate isomerase
530	 53.97	0	581387..582646	-	419	189025766	pgk	TPASS_0538	-	phosphoglycerate kinase
531	 51.35	0	582618..582839	+	73	189025767	-	TPASS_0539	-	hypothetical protein
532	 50.27	0	583120..583491	+	123	189025768	spoIIAA2	TPASS_0540	-	anti-sigma F factor antagonist
533	 55.10	0	583621..584580	+	319	189025769	era	TPASS_0541	-	GTP-binding protein
534	 53.08	0	584577..586298	-	573	189025770	-	TPASS_0542	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit
535	 52.05	0	586358..587041	-	227	189025771	ruvA	TPASS_0543	-	Holliday junction DNA helicase, subunit A
536	 50.93	0	587083..588957	-	624	189025772	-	TPASS_0544	-	hypothetical protein
537	 51.17	0	588982..590046	-	354	189025773	mglB1	TPASS_0545	-	methylgalactoside ABC transporter, periplasmic galactose-binding protein
538	 55.17	0	590131..592131	-	666	189025774	-	TPASS_0546	-	possible periplasmic serine protease
539	 64.37	+2	591843..592973	-	376	189025775	lytB	TPASS_0547	-	penicillin tolerance protein
540	 57.02	0	593117..594433	+	438	189025776	-	TPASS_0548	-	hypothetical protein
541	 55.26	0	594531..596975	+	814	189025777	clpC	TPASS_0549	-	ATP-dependent Clp protease, subunit C
542	 56.18	0	597016..598503	-	495	189025778	thdF	TPASS_0550	-	thiophene and furan oxidation protein
543	 57.12	0	598507..599595	-	362	189025779	-	TPASS_0551	-	phosphatase
544	 57.12	0	599608..600141	-	177	189025780	-	TPASS_0552	-	hypothetical protein
545	 47.69	-1	600385..601596	+	403	189025781	-	TPASS_0553	-	hypothetical integral membrane protein
546	 54.41	0	601631..602299	+	222	189025782	gph2	TPASS_0554	-	phosphoglycolate phosphatase
547	 54.49	0	602363..603553	-	396	189025783	-	TPASS_0555	-	possible glutamate/aspartate transporter
548	 53.98	0	603776..604768	-	330	189025784	asnA	TPASS_0556	-	asparagine synthetase
549	 51.82	0	604873..605586	+	237	189025785	-	TPASS_0557	-	hypothetical protein
550	 56.55	0	605616..606524	+	302	189025786	-	TPASS_0558	-	hypothetical integral membrane protein
551	 55.39	0	606586..607791	+	401	189025787	-	TPASS_0559	-	hypothetical protein
552	 54.73	0	607844..609829	-	661	189025788	tktA	TPASS_0560	-	transketolase A
553	 59.39	+1	609940..610791	-	283	189025789	-	TPASS_0561	-	hypothetical protein
554	 57.08	0	610962..612098	+	378	189025790	spsE	TPASS_0562	-	spore coat polysaccharide biosynthesis protein
555	 55.80	0	612089..612502	+	137	189025791	-	TPASS_0563	-	hypothetical protein
556	 51.69	0	612499..614535	+	678	189025792	-	TPASS_0564	-	hypothetical protein
557	 50.29	0	614417..615637	-	406	189025793	-	TPASS_0565	-	hypothetical protein
558	 45.50	-1	615648..617135	-	495	189025794	algI	TPASS_0566	-	alginate O-acetylation protein
559	 50.24	0	617167..617787	-	206	189025795	-	TPASS_0567	-	hypothetical protein
560	 54.98	0	617866..618498	-	210	189025796	eda	TPASS_0568	-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase
561	 56.52	0	618620..620944	-	774	189025797	-	TPASS_0569	-	aminopeptidase P
562	 56.03	0	620969..621814	-	281	189025798	-	TPASS_0570	-	hypothetical protein
563	 55.71	0	621841..622506	-	221	189025799	-	TPASS_0571	-	protein Tp70
564	 56.23	0	622524..623606	-	360	189025800	-	TPASS_0572	-	hypothetical protein
565	 44.09	-2	623597..623689	+	30	189025801	-	TPASS_0573	-	hypothetical protein
566	 53.95	0	623716..625020	-	434	189025802	-	TPASS_0574	-	carboxypeptidase, 47 kDa
567	 56.01	0	627252..628358	+	368	189025803	prfB	TPASS_0576	-	peptide chain release factor 2
568	 55.99	0	628250..630094	+	614	189025804	-	TPASS_0577	-	hypothetical protein
569	 54.39	0	630101..630988	+	295	189025805	ftsY	TPASS_0578	-	cell division protein
570	 52.77	0	630985..631761	+	258	189025806	-	TPASS_0579	-	hypothetical protein
571	 46.90	-1	631754..633043	+	429	189025807	-	TPASS_0580	-	hypothetical integral membrane protein
572	 46.70	-1	633036..633716	+	226	189025808	-	TPASS_0581	-	ABC transporter, ATP-binding protein
573	 50.81	0	633713..635200	+	495	189025809	-	TPASS_0582	-	hypothetical integral membrane protein
574	 52.38	0	635184..635309	-	41	189025810	-	TPASS_0583	-	hypothetical protein
575	 48.65	0	635296..636705	+	469	189025811	-	TPASS_0584	-	hypothetical protein
576	 54.50	0	636698..638341	+	547	189025812	oppA	TPASS_0585	-	oligopeptide ABC transporter, periplasmic binding protein
577	 53.55	0	638430..641066	+	878	189025813	leuS	TPASS_0586	-	leucyl-tRNA synthetase
578	 54.55	0	641046..641276	-	76	189025814	-	TPASS_0587	-	hypothetical protein
579	 48.24	-1	641303..642067	-	254	189025815	-	TPASS_0588	-	hypothetical protein
580	 49.81	0	642155..642421	-	88	189025816	ptsH	TPASS_0589	-	phosphocarrier protein HPr
581	 49.57	0	642393..642509	-	38	189025817	-	TPASS_0590	-	hypothetical protein
582	 48.12	-1	642466..643425	-	319	189025818	ptsK	TPASS_0591	-	HPr kinase
583	 52.10	0	644188..645690	+	500	189025819	-	TPASS_0592	-	hypothetical protein
584	 55.11	0	645627..647660	+	677	189025820	-	TPASS_0593	-	hypothetical protein
585	 52.22	0	647747..648355	-	202	189025821	-	TPASS_0594	-	hypothetical protein
586	 52.04	0	648383..649018	-	211	189025822	adk	TPASS_0595	-	adenylate kinase
587	 56.33	0	649042..650154	-	370	189025823	pcnB	TPASS_0596	-	polynucleotide adenylyltransferase
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.