IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.88   STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3	 43.56	-2	2623..3834	+	403	189025239	recF	TPASS_0003	-	recombination protein RecF
4	 47.03	-1	3827..4264	+	145	189025240	-	TPASS_0004	-	hypothetical protein
5	 47.50	-1	4391..6832	+	813	189025241	gyrA	TPASS_0005	-	DNA topoisomerase (ATP-hydrolyzing) subunit A
6	 49.79	0	7014..7967	+	317	189025242	-	TPASS_0006	-	protein Tp75
7	 48.15	-1	7991..8260	+	89	189025243	-	TPASS_0008	-	hypothetical protein
8	 47.62	-1	10237..10362	+	41	189025244	-	TPASS_0010	-	hypothetical protein
9	 52.55	0	10396..12378	+	660	189025245	tprB	TPASS_0011	-	protein TprB
10	 47.13	-1	12372..12545	+	57	189025246	-	TPASS_0012	-	hypothetical protein
11	 50.45	0	12542..13207	+	221	189025247	-	TPASS_0013	-	hypothetical protein
12	 48.93	0	13164..13772	+	202	189025248	-	TPASS_0014	-	hypothetical protein
13	 50.08	0	13963..15777	+	604	189025249	pheT	TPASS_0015	-	phenylalanyl-tRNA synthetase subunit beta
14	 50.27	0	15740..18313	+	857	189025250	lon1	TPASS_0016	-	ATP-dependent protease LA
15	 48.21	-1	18401..19348	+	315	189025251	-	TPASS_0017	-	hypothetical protein
16	 45.09	-1	19415..21388	+	657	189025252	-	TPASS_0018	-	transcription elongation factor
17	 45.40	-1	21555..22043	+	162	189025253	greA	TPASS_0019	-	transcription elongation factor GreA
18	 49.39	0	22043..24166	+	707	189025254	-	TPASS_0020	-	protein 76K
19	 42.70	-2	25104..25370	+	88	189025255	-	TPASS_0021	-	hypothetical protein
20	 50.02	0	25325..27493	+	722	189025256	-	TPASS_0022	-	hypothetical protein
21	 47.45	-1	27554..28885	+	443	189025257	-	TPASS_0023	-	sodium- and chloride- dependent transporter
22	 45.15	-1	29065..29775	+	236	189025258	-	TPASS_0024	-	hypothetical protein
23	 50.39	0	29854..32925	-	1023	189025259	-	TPASS_0025	-	hypothetical protein
24	 52.20	0	32954..33976	-	340	189025260	fliG1	TPASS_0026	-	flagellar motor switch protein
25	 51.39	0	34202..35425	+	407	189025261	-	TPASS_0027	-	possible hemolysin
26	 49.05	0	35439..36800	+	453	189025262	-	TPASS_0028	-	possible hemolysin
27	 50.08	0	36908..38185	+	425	189025263	murA	TPASS_0029	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
28	 50.15	0	38304..39938	+	544	189025264	groEL	TPASS_0030	-	heat shock protein GroEL
29	 56.27	0	40002..40280	+	92	189025265	-	TPASS_0031	-	hypothetical protein
30	 51.06	0	40277..41077	-	266	189025266	-	TPASS_0032	-	hypothetical protein
31	 43.46	-2	41074..41685	-	203	189025267	-	TPASS_0033	-	hypothetical integral membrane protein
32	 48.58	0	41786..42736	-	316	189025268	-	TPASS_0034	-	ABC transporter, periplasmic binding protein
33	 47.84	-1	42934..43650	+	238	189025269	-	TPASS_0035	-	ABC transporter, ATP-binding protein
34	 52.18	0	43650..44450	+	266	189025270	-	TPASS_0036	-	ABC transporter, permease protein
35	 51.51	0	44559..45554	-	331	189025271	-	TPASS_0037	-	D-specific D-2-hydroxyacid dehydrogenase
36	 54.23	0	45651..46703	-	350	189025272	pfoS/R	TPASS_0038	-	regulatory protein PfoS/R
37	 49.06	0	46752..46910	+	52	189025273	-	TPASS_0039	-	hypothetical protein
38	 54.29	0	47588..49381	+	597	189025274	mcp1	TPASS_0040	-	methyl-accepting chemotaxis protein
39	 61.79	+2	49383..49505	+	40	189025275	-	TPASS_0041	-	hypothetical protein
40	 55.41	0	49502..50434	+	310	189025276	-	TPASS_0042	-	hypothetical protein
41	 51.62	0	50415..52547	+	710	189025277	-	TPASS_0043	-	possible soluble lytic transglycosylase
42	 49.34	0	52587..54479	+	630	189025278	gidA	TPASS_0044	-	glucose inhibited division protein A
43	 43.33	-2	54535..55434	-	299	189025279	-	TPASS_0045	-	possible adenosine deaminase
44	 49.00	0	55796..56497	-	233	189025280	-	TPASS_0046	-	hypothetical protein
45	 46.74	-1	56515..57036	-	173	189025281	-	TPASS_0047	-	hypothetical protein
46	 51.85	0	57042..57473	-	143	189025282	-	TPASS_0048	-	hypothetical protein
47	 53.84	0	57495..58523	-	342	189025283	-	TPASS_0049	-	hypothetical protein
48	 53.37	0	58816..59424	-	202	189025284	-	TPASS_0050	-	hypothetical protein
49	 49.81	0	59575..60630	+	351	189025285	prfA	TPASS_0051	-	peptide chain release factor 1
50	 55.21	0	60600..61646	+	348	189025286	hemK	TPASS_0052	-	protoporphyrinogen oxidase
51	 45.08	-1	61735..62790	-	351	189025287	nrdB	TPASS_0053	-	ribonucleoside-diphosphate reductase, subunit beta
52	 53.12	0	62961..63920	+	319	189025288	-	TPASS_0054	-	hypothetical protein
53	 57.81	+1	64127..64363	+	78	189025289	-	TPASS_0055	-	hypothetical protein
54	 54.04	0	64360..66141	+	593	189025290	oadA	TPASS_0056	-	oxaloacetate decarboxylase, subunit alpha
55	 52.48	0	66153..67562	+	469	189025291	oadB	TPASS_0057	-	oxaloacetate decarboxylase, subunit beta
56	 53.00	0	67637..68953	-	438	189025292	dnaB	TPASS_0058	-	replicative DNA helicase DnaB
57	 53.95	0	68937..69164	-	75	189025293	-	TPASS_0059	-	hypothetical protein
58	 47.98	-1	69170..69640	-	156	189025294	rplI	TPASS_0060	-	ribosomal protein L9
59	 51.33	0	69746..70045	-	99	189025295	rpsR	TPASS_0061	-	ribosomal protein S18
60	 53.86	0	70162..70692	-	176	189025296	ssb	TPASS_0062	-	single-strand DNA binding protein Ssb
61	 53.55	0	70701..70982	-	93	189025297	rpsF	TPASS_0063	-	ribosomal protein S6
62	 49.65	0	71124..71699	+	191	189025298	-	TPASS_0064	-	hypothetical protein
63	 49.83	0	71773..72360	+	195	189025299	-	TPASS_0065	-	hypothetical protein
64	 52.06	0	72344..72658	+	104	189025300	-	TPASS_0066	-	hypothetical protein
65	 50.42	0	72646..73827	+	393	189025301	-	TPASS_0067	-	hypothetical protein
66	 53.18	0	74008..75030	+	340	189025302	-	TPASS_0068	-	hypothetical protein
67	 52.54	0	75086..75616	-	176	189025303	-	TPASS_0069	-	hypothetical protein
68	 52.97	0	75466..75852	-	128	189025304	-	TPASS_0070	-	hypothetical protein
69	 49.87	0	75903..78539	-	878	189025305	clpB	TPASS_0071	-	ATP-dependent Clp protease, subunit B
70	 48.72	0	78743..79015	+	90	189025306	-	TPASS_0072	-	hypothetical protein
71	 52.53	0	79085..80626	-	513	189025307	-	TPASS_0073	-	hypothetical protein
72	 55.11	0	80931..82340	+	469	189025308	y4oP	TPASS_0074	-	sugar ABC transporter, periplasmic binding protein
73	 49.38	0	82459..83349	+	296	189025309	y4oQ	TPASS_0075	-	sugar ABC transporter, permease protein
74	 48.42	-1	83389..84210	+	273	189025310	y4oR	TPASS_0076	-	sugar ABC transporter, permease protein
75	 50.22	0	84251..85867	+	538	189025311	cap	TPASS_0077	-	capsular polysaccharide biosynthesis protein
76	 50.04	0	85872..87110	+	412	189025312	spsC	TPASS_0078	-	spore coat polysaccharide biosynthesis protein
77	 50.16	0	87038..89260	+	740	189025313	-	TPASS_0079	-	hypothetical protein
78	 42.95	-2	89257..89724	+	155	189025314	-	TPASS_0080	-	quinoline 2-oxidoreductase
79	 46.64	-1	89731..90579	+	282	189025315	-	TPASS_0081	-	hypothetical protein
80	 52.69	0	90626..92428	-	600	189025316	fhlA	TPASS_0082	-	formate hydrogenlyase transcriptional activator FhlA
81	 54.18	0	93174..94454	+	426	189025317	-	TPASS_0083	-	hypothetical protein
82	 53.42	0	94434..94667	-	77	189025318	-	TPASS_0084	-	hypothetical protein
83	 49.66	0	94781..95227	-	148	189025319	ptsN1	TPASS_0085	-	PTS system, nitrogen regulatory IIA component
84	 53.65	0	95308..96252	+	314	189025320	-	TPASS_0086	-	hypothetical protein
85	 57.41	+1	96255..96794	-	179	189025321	-	TPASS_0087	-	hypothetical protein
86	 48.62	0	96778..97392	-	204	189025322	-	TPASS_0088	-	hypothetical protein
87	 45.39	-1	97422..98657	-	411	189025323	-	TPASS_0089	-	cyclic nucleotide binding protein
88	 57.75	+1	98740..99804	-	354	189025324	murB	TPASS_0090	-	UDP-N-acetylmuramate dehydrogenase
89	 54.51	0	99986..101548	+	520	189025325	cysS	TPASS_0091	-	cysteinyl-tRNA synthetase
90	 54.19	0	101619..102107	+	162	189025326	rpoE	TPASS_0092	-	RNA polymerase sigma-24 factor
91	 55.25	0	102091..102738	+	215	189025327	-	TPASS_0093	-	hypothetical protein
92	 51.43	0	102876..103886	+	336	189025328	pta	TPASS_0094	-	phosphate acetyltransferase
93	 56.65	0	103886..105832	+	648	189025329	-	TPASS_0095	-	hypothetical protein
94	 53.44	0	105906..106268	-	120	189025330	-	TPASS_0096	-	possible dnaK suppressor
95	 54.79	0	106438..106656	+	72	189025331	infA	TPASS_0097	-	translation initiation factor 1
96	 60.22	+1	106716..107366	-	216	189025332	-	TPASS_0098	-	possible heat-shock protein
97	 55.56	0	107370..108125	-	251	189025333	smbA	TPASS_0099	-	uridylate kinase
98	 54.89	0	108320..108922	+	200	189025334	-	TPASS_0100	-	possible thioredoxin
99	 55.35	0	108915..109709	+	264	189025335	ccdA	TPASS_0101	-	cytochrome c biogenesis protein
100	 45.09	-1	109747..111720	-	657	189025336	rep	TPASS_0102	-	Rep helicase, single-stranded DNA-dependent ATPase
101	 52.74	0	111785..113608	+	607	189025337	-	TPASS_0103	-	possible ATP-dependent DNA helicase
102	 48.43	-1	113855..115636	+	593	189025338	ushA	TPASS_0104	-	5'-nucleotidase
52.88	MEAN

4.36	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.