IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
442	 52.02	0	473747..474961	+	404	189025678	gcpE	TPASS_0446	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
443	 50.58	0	474958..476082	+	374	189025679	-	TPASS_0447	-	hypothetical protein
444	 44.78	-1	476140..477222	+	360	189025680	-	TPASS_0448	-	possible uracil phosphoribosyltransferase
445	 43.99	-2	477226..477816	+	196	189025681	-	TPASS_0449	-	hypothetical protein
446	 49.42	0	477953..480004	+	683	189025682	fusA1	TPASS_0450	-	translation elongation factor G
447	 51.37	0	479993..480175	-	60	189025683	-	TPASS_0451	-	hypothetical protein
448	 48.84	0	480454..483729	+	1091	189025684	ileS	TPASS_0452	-	isoleucyl-tRNA synthetase
449	 46.30	-1	483716..484579	+	287	189025685	-	TPASS_0453	-	hypothetical protein
450	 55.80	0	484929..485618	-	229	189025686	-	TPASS_0454	-	hypothetical protein
451	 52.74	0	485615..486619	-	334	189025687	-	TPASS_0455	-	hypothetical protein
452	 59.23	+1	486676..487992	-	438	189025688	-	TPASS_0456	-	hypothetical protein
453	 58.02	+1	488060..489841	+	593	189025689	-	TPASS_0457	-	hypothetical protein
454	 58.55	+1	489932..490510	+	192	189025690	-	TPASS_0458	-	hypothetical protein
455	 59.67	+1	490539..491324	+	261	189025691	-	TPASS_0459	-	hypothetical protein
456	 59.04	+1	491367..492074	+	235	189025692	-	TPASS_0460	-	hypothetical protein
457	 57.78	+1	492075..492434	+	119	189025693	-	TPASS_0461	-	hypothetical protein
458	 56.47	0	492639..493481	+	280	189025694	-	TPASS_0462	-	hypothetical protein
459	 56.76	0	493486..493818	+	110	189025695	-	TPASS_0463	-	hypothetical protein
460	 61.62	+2	493877..494629	-	250	189025696	-	TPASS_0464	-	hypothetical protein
461	 55.44	0	494626..495498	-	290	189025697	-	TPASS_0465	-	hypothetical protein
462	 45.73	-1	495431..496600	-	389	189025698	-	TPASS_0466	-	hypothetical protein
463	 53.01	0	496591..496839	+	82	189025699	-	TPASS_0467	-	hypothetical protein
464	 57.65	+1	496809..498761	-	650	189025700	-	TPASS_0468	-	hypothetical protein
465	 60.30	+1	498754..499695	-	313	189025701	-	TPASS_0470	-	hypothetical protein
466	 53.69	0	499687..501096	+	469	189025702	-	TPASS_0471	-	hypothetical protein
467	 50.72	0	501109..503184	-	691	189025703	uvrC	TPASS_0472	-	excinuclease ABC, subunit C
468	 48.99	0	503259..503903	-	214	189025704	-	TPASS_0473	-	hypothetical protein
469	 52.17	0	503968..504705	-	245	189025705	-	TPASS_0474	-	hypothetical protein
470	 53.73	0	504846..506453	-	535	189025706	gpi	TPASS_0475	-	glucose-6-phosphate isomerase
471	 52.41	0	506517..507863	-	448	189025707	ack	TPASS_0476	-	acetate kinase
472	 56.34	0	507930..508655	-	241	189025708	-	TPASS_0477	-	possible glucose-6-phosphate 1-dehydrogenase
473	 55.56	0	508716..510263	-	515	189025709	zwf	TPASS_0478	-	glucose-6-phosphate 1-dehydrogenase
474	 56.30	0	510336..511010	-	224	189025710	-	TPASS_0479	-	hypothetical protein
475	 56.44	0	511122..511610	+	162	189025711	-	TPASS_0480	-	hypothetical protein
476	 56.90	0	511642..513075	+	477	189025712	-	TPASS_0481	-	hypothetical protein
477	 60.31	+1	513042..513890	+	282	189025713	-	TPASS_0482	-	hypothetical protein
478	 52.44	0	513956..515080	-	374	189025714	-	TPASS_0483	-	hypothetical protein/fibronectin-binding protein
479	 55.06	0	515067..517082	-	671	189025715	-	TPASS_0484	-	hypothetical protein
480	 52.30	0	516976..518820	-	614	189025716	-	TPASS_0485	-	adenylate cyclase
481	 60.09	+1	518817..520412	-	531	189025717	-	TPASS_0486	-	antigen, p83/100
482	 59.57	+1	520501..522078	-	525	189025718	-	TPASS_0487	-	hypothetical protein
483	 54.73	0	522306..524843	+	845	189025719	mcp2	TPASS_0488	-	methyl-accepting chemotaxis protein
484	 48.50	-1	525291..526259	+	322	189025720	-	TPASS_0489	-	hypothetical protein
485	 55.03	0	526256..526444	+	62	189025721	-	TPASS_0490	-	hypothetical protein
486	 52.08	0	526451..527485	+	344	189025722	-	TPASS_0491	-	hypothetical protein
487	 51.10	0	527509..529326	+	605	189025723	dnaG	TPASS_0492	-	DNA primase
488	 48.97	0	529323..531158	+	611	189025724	rpoD	TPASS_0493	-	RNA polymerase sigma-70 factor
489	 52.07	0	531168..531989	+	273	189025725	-	TPASS_0494	-	hypothetical protein
490	 53.33	0	532319..533308	+	329	189025726	-	TPASS_0496	-	hypothetical protein
491	 50.82	0	533321..534355	+	344	189025727	mreB	TPASS_0497	-	rod shape-determining protein
492	 48.15	-1	534360..535223	+	287	189025728	mreC	TPASS_0498	-	rod shape-determining protein
493	 43.20	-2	535220..535726	+	168	189025729	mreD	TPASS_0499	-	rod shape-determining protein
494	 48.37	-1	535727..537601	+	624	189025730	pbp1	TPASS_0500	-	penicillin-binding protein
495	 46.70	-1	537598..538899	+	433	189025731	rodA	TPASS_0501	-	rod shape-determining protein
496	 50.61	0	538925..539821	+	298	189025732	-	TPASS_0502	-	hypothetical protein
497	 53.90	0	539800..540363	+	187	189025733	-	TPASS_0503	-	hypothetical protein
498	 60.28	+1	540345..540485	+	46	189025734	-	TPASS_0504	-	hypothetical protein
499	 53.63	0	540494..541828	-	444	189025735	hxk	TPASS_0505	-	hexokinase
500	 54.25	0	542563..543891	+	442	189025736	tig	TPASS_0506	-	trigger factor
501	 52.78	0	543884..544495	+	203	189025737	clpP1	TPASS_0507	-	ATP-dependent Clp protease proteolytic component
502	 48.56	0	544482..545729	+	415	189025738	clpX	TPASS_0508	-	ATP-dependent Clp protease subunit X
503	 51.32	0	545826..546392	+	188	189025739	ahpC	TPASS_0509	-	alkyl hydroperoxide reductase
504	 52.20	0	546573..548390	-	605	189025740	lepA	TPASS_0510	-	GTP-binding membrane protein
505	 49.76	0	548433..549059	+	208	189025741	carD	TPASS_0511	-	transcription factor
506	 57.69	+1	549056..550303	+	415	189025742	-	TPASS_0512	-	hypothetical protein
507	 50.96	0	550377..551777	+	466	189025743	trkA	TPASS_0513	-	K+ transport protein
508	 47.31	-1	551891..554773	+	960	189025744	uvrA	TPASS_0514	-	excinuclease ABC, subunit A
509	 42.20	-2	554770..557745	+	991	189025745	-	TPASS_0515	-	hypothetical protein
510	 41.87	-2	557759..559339	-	526	189025746	mviN	TPASS_0516	-	virulence factor
511	 46.87	-1	559336..559926	-	196	189025747	ruvC	TPASS_0517	-	Holliday junction nuclease, subunit C
512	 49.21	0	559908..560600	-	230	189025748	-	TPASS_0518	-	hypothetical protein
513	 42.99	-2	560597..561973	-	458	189025749	atoC	TPASS_0519	-	response regulatory protein
514	 49.61	0	563168..564439	-	423	189025750	-	TPASS_0521	-	possible DNA polymerase III, gamma and tau subunits
515	 45.62	-1	564450..564929	-	159	189025751	-	TPASS_0522	-	hypothetical protein
516	 52.90	0	564926..566080	-	384	189025752	murG	TPASS_0523	-	UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
517	 52.04	0	566084..568729	-	881	189025753	lon2	TPASS_0524	-	ATP-dependent protease LA
518	 49.82	0	568865..569428	+	187	189025754	efp	TPASS_0525	-	translation elongation factor P
519	 49.48	0	569576..571582	+	668	189025755	hrpA	TPASS_0526	-	ATP-dependent helicase
520	 52.70	0	571630..572259	-	209	189025756	atpD2	TPASS_0527	-	V-type ATPase, subunit D
521	 51.98	0	572354..573796	-	480	189025757	atpB2	TPASS_0528	-	V-type ATPase, subunit B
522	 54.68	0	573793..575610	-	605	189025758	atpA2	TPASS_0529	-	V-type ATPase, subunit A
523	 55.50	0	575607..576233	-	208	189025759	-	TPASS_0530	-	possible V-type ATPase, subunit E
524	 57.23	0	576239..576577	-	112	189025760	-	TPASS_0531	-	possible V-type ATPase, subunit F
525	 53.41	0	577197..578561	-	454	189025761	atpI2	TPASS_0533	-	V-type ATPase, subunit I
526	 54.87	0	578554..579579	-	341	189025762	-	TPASS_0534	-	hypothetical protein
527	 60.09	+1	579583..579795	-	70	189025763	-	TPASS_0535	-	hypothetical protein
528	 57.96	+1	579936..580337	-	133	189025764	-	TPASS_0536	-	hypothetical protein
529	 56.27	0	580487..581236	-	249	189025765	tpi	TPASS_0537	-	triosephosphate isomerase
530	 53.97	0	581387..582646	-	419	189025766	pgk	TPASS_0538	-	phosphoglycerate kinase
531	 51.35	0	582618..582839	+	73	189025767	-	TPASS_0539	-	hypothetical protein
532	 50.27	0	583120..583491	+	123	189025768	spoIIAA2	TPASS_0540	-	anti-sigma F factor antagonist
533	 55.10	0	583621..584580	+	319	189025769	era	TPASS_0541	-	GTP-binding protein
534	 53.08	0	584577..586298	-	573	189025770	-	TPASS_0542	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit
535	 52.05	0	586358..587041	-	227	189025771	ruvA	TPASS_0543	-	Holliday junction DNA helicase, subunit A
536	 50.93	0	587083..588957	-	624	189025772	-	TPASS_0544	-	hypothetical protein
537	 51.17	0	588982..590046	-	354	189025773	mglB1	TPASS_0545	-	methylgalactoside ABC transporter, periplasmic galactose-binding protein
538	 55.17	0	590131..592131	-	666	189025774	-	TPASS_0546	-	possible periplasmic serine protease
539	 64.37	+2	591843..592973	-	376	189025775	lytB	TPASS_0547	-	penicillin tolerance protein
540	 57.02	0	593117..594433	+	438	189025776	-	TPASS_0548	-	hypothetical protein
541	 55.26	0	594531..596975	+	814	189025777	clpC	TPASS_0549	-	ATP-dependent Clp protease, subunit C
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.