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Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 435 54.39 0 466729..467241 + 170 189025671 cheW2 TPASS_0439 - purine-binding chemotaxis protein 436 56.34 0 467331..468482 + 383 189025672 - TPASS_0440 - possible spore coat polysaccharide biosynthesis protein 437 53.81 0 468479..469396 + 305 189025673 - TPASS_0441 - hypothetical protein 438 55.11 0 469389..471110 + 573 189025674 recN TPASS_0442 - DNA repair protein 439 48.30 -1 471052..471906 + 284 189025675 - TPASS_0443 - hypothetical protein 440 55.59 0 471912..472940 + 342 189025676 - TPASS_0444 - hypothetical protein 441 59.52 +1 473076..473705 + 209 189025677 thiJ TPASS_0445 - 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 442 52.02 0 473747..474961 + 404 189025678 gcpE TPASS_0446 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 443 50.58 0 474958..476082 + 374 189025679 - TPASS_0447 - hypothetical protein 444 44.78 -1 476140..477222 + 360 189025680 - TPASS_0448 - possible uracil phosphoribosyltransferase 445 43.99 -2 477226..477816 + 196 189025681 - TPASS_0449 - hypothetical protein 446 49.42 0 477953..480004 + 683 189025682 fusA1 TPASS_0450 - translation elongation factor G 447 51.37 0 479993..480175 - 60 189025683 - TPASS_0451 - hypothetical protein 448 48.84 0 480454..483729 + 1091 189025684 ileS TPASS_0452 - isoleucyl-tRNA synthetase 449 46.30 -1 483716..484579 + 287 189025685 - TPASS_0453 - hypothetical protein 450 55.80 0 484929..485618 - 229 189025686 - TPASS_0454 - hypothetical protein 451 52.74 0 485615..486619 - 334 189025687 - TPASS_0455 - hypothetical protein 452 59.23 +1 486676..487992 - 438 189025688 - TPASS_0456 - hypothetical protein 453 58.02 +1 488060..489841 + 593 189025689 - TPASS_0457 - hypothetical protein 454 58.55 +1 489932..490510 + 192 189025690 - TPASS_0458 - hypothetical protein 455 59.67 +1 490539..491324 + 261 189025691 - TPASS_0459 - hypothetical protein 456 59.04 +1 491367..492074 + 235 189025692 - TPASS_0460 - hypothetical protein 457 57.78 +1 492075..492434 + 119 189025693 - TPASS_0461 - hypothetical protein 458 56.47 0 492639..493481 + 280 189025694 - TPASS_0462 - hypothetical protein 459 56.76 0 493486..493818 + 110 189025695 - TPASS_0463 - hypothetical protein 460 61.62 +2 493877..494629 - 250 189025696 - TPASS_0464 - hypothetical protein 461 55.44 0 494626..495498 - 290 189025697 - TPASS_0465 - hypothetical protein 462 45.73 -1 495431..496600 - 389 189025698 - TPASS_0466 - hypothetical protein 463 53.01 0 496591..496839 + 82 189025699 - TPASS_0467 - hypothetical protein 464 57.65 +1 496809..498761 - 650 189025700 - TPASS_0468 - hypothetical protein 465 60.30 +1 498754..499695 - 313 189025701 - TPASS_0470 - hypothetical protein 466 53.69 0 499687..501096 + 469 189025702 - TPASS_0471 - hypothetical protein 467 50.72 0 501109..503184 - 691 189025703 uvrC TPASS_0472 - excinuclease ABC, subunit C 468 48.99 0 503259..503903 - 214 189025704 - TPASS_0473 - hypothetical protein 469 52.17 0 503968..504705 - 245 189025705 - TPASS_0474 - hypothetical protein 470 53.73 0 504846..506453 - 535 189025706 gpi TPASS_0475 - glucose-6-phosphate isomerase 471 52.41 0 506517..507863 - 448 189025707 ack TPASS_0476 - acetate kinase 472 56.34 0 507930..508655 - 241 189025708 - TPASS_0477 - possible glucose-6-phosphate 1-dehydrogenase 473 55.56 0 508716..510263 - 515 189025709 zwf TPASS_0478 - glucose-6-phosphate 1-dehydrogenase 474 56.30 0 510336..511010 - 224 189025710 - TPASS_0479 - hypothetical protein 475 56.44 0 511122..511610 + 162 189025711 - TPASS_0480 - hypothetical protein 476 56.90 0 511642..513075 + 477 189025712 - TPASS_0481 - hypothetical protein 477 60.31 +1 513042..513890 + 282 189025713 - TPASS_0482 - hypothetical protein 478 52.44 0 513956..515080 - 374 189025714 - TPASS_0483 - hypothetical protein/fibronectin-binding protein 479 55.06 0 515067..517082 - 671 189025715 - TPASS_0484 - hypothetical protein 480 52.30 0 516976..518820 - 614 189025716 - TPASS_0485 - adenylate cyclase 481 60.09 +1 518817..520412 - 531 189025717 - TPASS_0486 - antigen, p83/100 482 59.57 +1 520501..522078 - 525 189025718 - TPASS_0487 - hypothetical protein 483 54.73 0 522306..524843 + 845 189025719 mcp2 TPASS_0488 - methyl-accepting chemotaxis protein 484 48.50 -1 525291..526259 + 322 189025720 - TPASS_0489 - hypothetical protein 485 55.03 0 526256..526444 + 62 189025721 - TPASS_0490 - hypothetical protein 486 52.08 0 526451..527485 + 344 189025722 - TPASS_0491 - hypothetical protein 487 51.10 0 527509..529326 + 605 189025723 dnaG TPASS_0492 - DNA primase 488 48.97 0 529323..531158 + 611 189025724 rpoD TPASS_0493 - RNA polymerase sigma-70 factor 489 52.07 0 531168..531989 + 273 189025725 - TPASS_0494 - hypothetical protein 490 53.33 0 532319..533308 + 329 189025726 - TPASS_0496 - hypothetical protein 491 50.82 0 533321..534355 + 344 189025727 mreB TPASS_0497 - rod shape-determining protein 492 48.15 -1 534360..535223 + 287 189025728 mreC TPASS_0498 - rod shape-determining protein 493 43.20 -2 535220..535726 + 168 189025729 mreD TPASS_0499 - rod shape-determining protein 494 48.37 -1 535727..537601 + 624 189025730 pbp1 TPASS_0500 - penicillin-binding protein 495 46.70 -1 537598..538899 + 433 189025731 rodA TPASS_0501 - rod shape-determining protein 496 50.61 0 538925..539821 + 298 189025732 - TPASS_0502 - hypothetical protein 497 53.90 0 539800..540363 + 187 189025733 - TPASS_0503 - hypothetical protein 498 60.28 +1 540345..540485 + 46 189025734 - TPASS_0504 - hypothetical protein 499 53.63 0 540494..541828 - 444 189025735 hxk TPASS_0505 - hexokinase 500 54.25 0 542563..543891 + 442 189025736 tig TPASS_0506 - trigger factor 501 52.78 0 543884..544495 + 203 189025737 clpP1 TPASS_0507 - ATP-dependent Clp protease proteolytic component 502 48.56 0 544482..545729 + 415 189025738 clpX TPASS_0508 - ATP-dependent Clp protease subunit X 503 51.32 0 545826..546392 + 188 189025739 ahpC TPASS_0509 - alkyl hydroperoxide reductase 504 52.20 0 546573..548390 - 605 189025740 lepA TPASS_0510 - GTP-binding membrane protein 505 49.76 0 548433..549059 + 208 189025741 carD TPASS_0511 - transcription factor 506 57.69 +1 549056..550303 + 415 189025742 - TPASS_0512 - hypothetical protein 507 50.96 0 550377..551777 + 466 189025743 trkA TPASS_0513 - K+ transport protein 508 47.31 -1 551891..554773 + 960 189025744 uvrA TPASS_0514 - excinuclease ABC, subunit A 509 42.20 -2 554770..557745 + 991 189025745 - TPASS_0515 - hypothetical protein 510 41.87 -2 557759..559339 - 526 189025746 mviN TPASS_0516 - virulence factor 511 46.87 -1 559336..559926 - 196 189025747 ruvC TPASS_0517 - Holliday junction nuclease, subunit C 512 49.21 0 559908..560600 - 230 189025748 - TPASS_0518 - hypothetical protein 513 42.99 -2 560597..561973 - 458 189025749 atoC TPASS_0519 - response regulatory protein 514 49.61 0 563168..564439 - 423 189025750 - TPASS_0521 - possible DNA polymerase III, gamma and tau subunits 515 45.62 -1 564450..564929 - 159 189025751 - TPASS_0522 - hypothetical protein 516 52.90 0 564926..566080 - 384 189025752 murG TPASS_0523 - UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 517 52.04 0 566084..568729 - 881 189025753 lon2 TPASS_0524 - ATP-dependent protease LA 518 49.82 0 568865..569428 + 187 189025754 efp TPASS_0525 - translation elongation factor P 519 49.48 0 569576..571582 + 668 189025755 hrpA TPASS_0526 - ATP-dependent helicase 520 52.70 0 571630..572259 - 209 189025756 atpD2 TPASS_0527 - V-type ATPase, subunit D 521 51.98 0 572354..573796 - 480 189025757 atpB2 TPASS_0528 - V-type ATPase, subunit B 522 54.68 0 573793..575610 - 605 189025758 atpA2 TPASS_0529 - V-type ATPase, subunit A 523 55.50 0 575607..576233 - 208 189025759 - TPASS_0530 - possible V-type ATPase, subunit E 524 57.23 0 576239..576577 - 112 189025760 - TPASS_0531 - possible V-type ATPase, subunit F 525 53.41 0 577197..578561 - 454 189025761 atpI2 TPASS_0533 - V-type ATPase, subunit I 526 54.87 0 578554..579579 - 341 189025762 - TPASS_0534 - hypothetical protein 527 60.09 +1 579583..579795 - 70 189025763 - TPASS_0535 - hypothetical protein 528 57.96 +1 579936..580337 - 133 189025764 - TPASS_0536 - hypothetical protein 529 56.27 0 580487..581236 - 249 189025765 tpi TPASS_0537 - triosephosphate isomerase 530 53.97 0 581387..582646 - 419 189025766 pgk TPASS_0538 - phosphoglycerate kinase 531 51.35 0 582618..582839 + 73 189025767 - TPASS_0539 - hypothetical protein 532 50.27 0 583120..583491 + 123 189025768 spoIIAA2 TPASS_0540 - anti-sigma F factor antagonist 533 55.10 0 583621..584580 + 319 189025769 era TPASS_0541 - GTP-binding protein 534 53.08 0 584577..586298 - 573 189025770 - TPASS_0542 - pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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