IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
408	 54.24	0	438385..439647	+	420	189025644	secF	TPASS_0411	-	protein-export membrane protein
409	 47.39	-1	439723..440028	-	101	189025645	-	TPASS_0412	-	hypothetical protein
410	 54.50	0	440047..441945	-	632	189025646	-	TPASS_0413	-	phosphoglucomutase
411	 56.19	0	442048..443403	+	451	189025647	dagA	TPASS_0414	-	D-alanine glycine permease
412	 59.36	+1	443384..443917	+	177	189025648	-	TPASS_0415	-	hypothetical protein
413	 55.04	0	443864..445222	-	452	189025649	ffh	TPASS_0416	-	signal recognition particle protein
414	 57.38	+1	445215..446894	-	559	189025650	cutE	TPASS_0417	-	apolipoprotein N-acyltransferase
415	 54.52	0	446921..448114	+	397	189025651	-	TPASS_0418	-	galactokinase
416	 58.51	+1	448111..448674	+	187	189025652	-	TPASS_0419	-	possible survival protein
417	 58.77	+1	448655..448882	+	75	189025653	-	TPASS_0420	-	hypothetical protein
418	 55.41	0	449016..451067	+	683	189025654	-	TPASS_0421	-	hypothetical protein
419	 57.21	0	451051..452076	+	341	189025655	-	TPASS_0422	-	hypothetical protein
420	 55.64	0	452101..452907	+	268	189025656	-	TPASS_0423	-	hypothetical protein
421	 56.65	0	453110..453808	+	232	189025657	-	TPASS_0424	-	possible V-type ATPase, subunit E
422	 60.15	+1	453786..454046	+	86	189025658	-	TPASS_0425	-	hypothetical protein
423	 54.01	0	454188..455957	+	589	189025659	atpA1	TPASS_0426	-	V-type ATPase, subunit A
424	 50.89	0	455961..457253	+	430	189025660	atpB1	TPASS_0427	-	V-type ATPase, subunit B
425	 50.56	0	457265..457885	+	206	189025661	atpD1	TPASS_0428	-	V-type ATPase, subunit D
426	 53.24	0	457882..459750	+	622	189025662	atpI1	TPASS_0429	-	V-type ATPase, subunit I
427	 54.37	0	459787..460209	+	140	189025663	atpK1	TPASS_0430	-	V-type ATPase, subunit K
428	 57.54	+1	460243..461064	+	273	189025664	-	TPASS_0431	-	hypothetical protein
429	 56.70	0	461107..461658	+	183	189025665	-	TPASS_0432	-	hypothetical protein
430	 61.16	+1	461713..463527	+	604	189025666	arp	TPASS_0433	-	acidic repeat protein
431	 55.84	0	463624..464094	-	156	189025667	tpp17	TPASS_0435	-	lipoprotein, 17 kDa
432	 59.10	+1	464225..465307	-	360	189025668	-	TPASS_0436	-	hypothetical protein
433	 53.86	0	465273..465803	-	176	189025669	-	TPASS_0437	-	hypothetical protein
434	 58.40	+1	465833..466642	+	269	189025670	-	TPASS_0438	-	hypothetical protein
435	 54.39	0	466729..467241	+	170	189025671	cheW2	TPASS_0439	-	purine-binding chemotaxis protein
436	 56.34	0	467331..468482	+	383	189025672	-	TPASS_0440	-	possible spore coat polysaccharide biosynthesis protein
437	 53.81	0	468479..469396	+	305	189025673	-	TPASS_0441	-	hypothetical protein
438	 55.11	0	469389..471110	+	573	189025674	recN	TPASS_0442	-	DNA repair protein
439	 48.30	-1	471052..471906	+	284	189025675	-	TPASS_0443	-	hypothetical protein
440	 55.59	0	471912..472940	+	342	189025676	-	TPASS_0444	-	hypothetical protein
441	 59.52	+1	473076..473705	+	209	189025677	thiJ	TPASS_0445	-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
442	 52.02	0	473747..474961	+	404	189025678	gcpE	TPASS_0446	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
443	 50.58	0	474958..476082	+	374	189025679	-	TPASS_0447	-	hypothetical protein
444	 44.78	-1	476140..477222	+	360	189025680	-	TPASS_0448	-	possible uracil phosphoribosyltransferase
445	 43.99	-2	477226..477816	+	196	189025681	-	TPASS_0449	-	hypothetical protein
446	 49.42	0	477953..480004	+	683	189025682	fusA1	TPASS_0450	-	translation elongation factor G
447	 51.37	0	479993..480175	-	60	189025683	-	TPASS_0451	-	hypothetical protein
448	 48.84	0	480454..483729	+	1091	189025684	ileS	TPASS_0452	-	isoleucyl-tRNA synthetase
449	 46.30	-1	483716..484579	+	287	189025685	-	TPASS_0453	-	hypothetical protein
450	 55.80	0	484929..485618	-	229	189025686	-	TPASS_0454	-	hypothetical protein
451	 52.74	0	485615..486619	-	334	189025687	-	TPASS_0455	-	hypothetical protein
452	 59.23	+1	486676..487992	-	438	189025688	-	TPASS_0456	-	hypothetical protein
453	 58.02	+1	488060..489841	+	593	189025689	-	TPASS_0457	-	hypothetical protein
454	 58.55	+1	489932..490510	+	192	189025690	-	TPASS_0458	-	hypothetical protein
455	 59.67	+1	490539..491324	+	261	189025691	-	TPASS_0459	-	hypothetical protein
456	 59.04	+1	491367..492074	+	235	189025692	-	TPASS_0460	-	hypothetical protein
457	 57.78	+1	492075..492434	+	119	189025693	-	TPASS_0461	-	hypothetical protein
458	 56.47	0	492639..493481	+	280	189025694	-	TPASS_0462	-	hypothetical protein
459	 56.76	0	493486..493818	+	110	189025695	-	TPASS_0463	-	hypothetical protein
460	 61.62	+2	493877..494629	-	250	189025696	-	TPASS_0464	-	hypothetical protein
461	 55.44	0	494626..495498	-	290	189025697	-	TPASS_0465	-	hypothetical protein
462	 45.73	-1	495431..496600	-	389	189025698	-	TPASS_0466	-	hypothetical protein
463	 53.01	0	496591..496839	+	82	189025699	-	TPASS_0467	-	hypothetical protein
464	 57.65	+1	496809..498761	-	650	189025700	-	TPASS_0468	-	hypothetical protein
465	 60.30	+1	498754..499695	-	313	189025701	-	TPASS_0470	-	hypothetical protein
466	 53.69	0	499687..501096	+	469	189025702	-	TPASS_0471	-	hypothetical protein
467	 50.72	0	501109..503184	-	691	189025703	uvrC	TPASS_0472	-	excinuclease ABC, subunit C
468	 48.99	0	503259..503903	-	214	189025704	-	TPASS_0473	-	hypothetical protein
469	 52.17	0	503968..504705	-	245	189025705	-	TPASS_0474	-	hypothetical protein
470	 53.73	0	504846..506453	-	535	189025706	gpi	TPASS_0475	-	glucose-6-phosphate isomerase
471	 52.41	0	506517..507863	-	448	189025707	ack	TPASS_0476	-	acetate kinase
472	 56.34	0	507930..508655	-	241	189025708	-	TPASS_0477	-	possible glucose-6-phosphate 1-dehydrogenase
473	 55.56	0	508716..510263	-	515	189025709	zwf	TPASS_0478	-	glucose-6-phosphate 1-dehydrogenase
474	 56.30	0	510336..511010	-	224	189025710	-	TPASS_0479	-	hypothetical protein
475	 56.44	0	511122..511610	+	162	189025711	-	TPASS_0480	-	hypothetical protein
476	 56.90	0	511642..513075	+	477	189025712	-	TPASS_0481	-	hypothetical protein
477	 60.31	+1	513042..513890	+	282	189025713	-	TPASS_0482	-	hypothetical protein
478	 52.44	0	513956..515080	-	374	189025714	-	TPASS_0483	-	hypothetical protein/fibronectin-binding protein
479	 55.06	0	515067..517082	-	671	189025715	-	TPASS_0484	-	hypothetical protein
480	 52.30	0	516976..518820	-	614	189025716	-	TPASS_0485	-	adenylate cyclase
481	 60.09	+1	518817..520412	-	531	189025717	-	TPASS_0486	-	antigen, p83/100
482	 59.57	+1	520501..522078	-	525	189025718	-	TPASS_0487	-	hypothetical protein
483	 54.73	0	522306..524843	+	845	189025719	mcp2	TPASS_0488	-	methyl-accepting chemotaxis protein
484	 48.50	-1	525291..526259	+	322	189025720	-	TPASS_0489	-	hypothetical protein
485	 55.03	0	526256..526444	+	62	189025721	-	TPASS_0490	-	hypothetical protein
486	 52.08	0	526451..527485	+	344	189025722	-	TPASS_0491	-	hypothetical protein
487	 51.10	0	527509..529326	+	605	189025723	dnaG	TPASS_0492	-	DNA primase
488	 48.97	0	529323..531158	+	611	189025724	rpoD	TPASS_0493	-	RNA polymerase sigma-70 factor
489	 52.07	0	531168..531989	+	273	189025725	-	TPASS_0494	-	hypothetical protein
490	 53.33	0	532319..533308	+	329	189025726	-	TPASS_0496	-	hypothetical protein
491	 50.82	0	533321..534355	+	344	189025727	mreB	TPASS_0497	-	rod shape-determining protein
492	 48.15	-1	534360..535223	+	287	189025728	mreC	TPASS_0498	-	rod shape-determining protein
493	 43.20	-2	535220..535726	+	168	189025729	mreD	TPASS_0499	-	rod shape-determining protein
494	 48.37	-1	535727..537601	+	624	189025730	pbp1	TPASS_0500	-	penicillin-binding protein
495	 46.70	-1	537598..538899	+	433	189025731	rodA	TPASS_0501	-	rod shape-determining protein
496	 50.61	0	538925..539821	+	298	189025732	-	TPASS_0502	-	hypothetical protein
497	 53.90	0	539800..540363	+	187	189025733	-	TPASS_0503	-	hypothetical protein
498	 60.28	+1	540345..540485	+	46	189025734	-	TPASS_0504	-	hypothetical protein
499	 53.63	0	540494..541828	-	444	189025735	hxk	TPASS_0505	-	hexokinase
500	 54.25	0	542563..543891	+	442	189025736	tig	TPASS_0506	-	trigger factor
501	 52.78	0	543884..544495	+	203	189025737	clpP1	TPASS_0507	-	ATP-dependent Clp protease proteolytic component
502	 48.56	0	544482..545729	+	415	189025738	clpX	TPASS_0508	-	ATP-dependent Clp protease subunit X
503	 51.32	0	545826..546392	+	188	189025739	ahpC	TPASS_0509	-	alkyl hydroperoxide reductase
504	 52.20	0	546573..548390	-	605	189025740	lepA	TPASS_0510	-	GTP-binding membrane protein
505	 49.76	0	548433..549059	+	208	189025741	carD	TPASS_0511	-	transcription factor
506	 57.69	+1	549056..550303	+	415	189025742	-	TPASS_0512	-	hypothetical protein
507	 50.96	0	550377..551777	+	466	189025743	trkA	TPASS_0513	-	K+ transport protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.