IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
337	 46.91	-1	363190..364662	-	490	189025573	folC	TPASS_0340	-	folylpolyglutamate synthetase
338	 49.79	0	364681..366126	+	481	189025574	murC	TPASS_0341	-	UDP-N-acetylmuramate--alanine ligase
339	 48.31	-1	366247..366807	+	186	189025575	cmk	TPASS_0342	-	cytidylate kinase
340	 49.52	0	366801..367634	+	277	189025576	-	TPASS_0343	-	possible A/G-specific adenine glycosylase
341	 49.66	0	367639..371061	-	1140	189025577	trcF	TPASS_0344	-	transcription-repair coupling factor
342	 50.73	0	371214..372305	+	363	189025578	mraY	TPASS_0345	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
343	 54.84	0	372462..373163	+	233	189025579	-	TPASS_0346	-	hypothetical protein
344	 57.40	+1	373132..373962	+	276	189025580	-	TPASS_0347	-	hypothetical protein
345	 59.86	+1	373696..375105	-	469	189025581	-	TPASS_0348	-	hypothetical protein
346	 57.63	+1	375075..375605	-	176	189025582	slyD	TPASS_0349	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
347	 55.71	0	375819..377105	+	428	189025583	proA	TPASS_0350	-	gamma-glutamyl phosphate reductase
348	 55.89	0	377102..377992	+	296	189025584	proB	TPASS_0351	-	glutamate 5-kinase
349	 52.71	0	378124..378381	+	85	189025585	-	TPASS_0352	-	hypothetical protein
350	 60.00	+1	378378..378887	-	169	189025586	rnhA	TPASS_0353	-	ribonuclease H
351	 47.21	-1	379150..379776	+	208	189025587	tmk	TPASS_0354	-	thymidylate kinase
352	 47.66	-1	379743..380126	-	127	189025588	-	TPASS_0355	-	hypothetical protein
353	 47.80	-1	380331..380648	+	105	189025589	-	TPASS_0356	-	possible RNA-binding protein
354	 58.84	+1	380750..381490	+	246	189025590	birA	TPASS_0357	-	biotin--acetyl-CoA-carboxylase ligase
355	 51.87	0	381495..383075	-	526	189025591	-	TPASS_0358	-	hypothetical protein
356	 52.52	0	383087..383722	-	211	189025592	-	TPASS_0359	-	hypothetical protein
357	 54.80	0	383933..384109	+	58	189025593	-	TPASS_0360	-	hypothetical protein
358	 57.60	+1	384106..384954	-	282	189025594	-	TPASS_0361	-	possible lysophosphatidic acid acyltransferase
359	 59.92	+1	385030..385266	+	78	189025595	rpmB	TPASS_0362	-	ribosomal protein L28
360	 54.24	0	385758..388196	+	812	189025596	cheA	TPASS_0363	-	chemotaxis histidine kinase
361	 52.12	0	388190..389557	+	455	189025597	cheW1	TPASS_0364	-	purine-binding chemotaxis protein
362	 52.26	0	389579..390043	+	154	189025598	cheX	TPASS_0365	-	chemotaxis protein
363	 48.28	-1	390056..390490	+	144	189025599	cheY	TPASS_0366	-	chemotaxis response regulator
364	 52.44	0	390794..393619	+	941	189025600	-	TPASS_0367	-	possible chromosome segregation protein
365	 59.23	+1	393619..393954	+	111	189025601	-	TPASS_0368	-	hypothetical protein
366	 59.06	+1	393951..395501	+	516	189025602	-	TPASS_0369	-	hypothetical protein
367	 50.60	0	395569..395985	-	138	189025603	-	TPASS_0370	-	hypothetical protein
368	 58.11	+1	395959..396834	+	291	189025604	-	TPASS_0371	-	hypothetical protein
369	 55.84	0	396956..397546	+	196	189025605	ctc	TPASS_0372	-	general stress protein
370	 56.90	0	397606..399039	+	477	189025606	-	TPASS_0373	-	hypothetical protein
371	 54.29	0	398975..401350	+	791	189025607	-	TPASS_0374	-	hypothetical protein
372	 50.00	0	401508..401717	+	69	189025608	-	TPASS_0375	-	hypothetical protein
373	 53.31	0	402033..402938	-	301	189025609	-	TPASS_0376	-	hypothetical protein
374	 55.56	0	403007..403132	+	41	189025610	-	TPASS_0377	-	hypothetical protein
375	 53.02	0	403129..403509	+	126	189025611	-	TPASS_0378	-	possible flagellar protein
376	 51.76	0	403584..406334	-	916	189025612	secA	TPASS_0379	-	preprotein translocase subunit
377	 54.81	0	406441..408261	-	606	189025613	-	TPASS_0380	-	possible DNA repair helicase
378	 53.97	0	408399..409115	-	238	189025614	-	TPASS_0381	-	hypothetical protein
379	 58.54	+1	409199..409321	+	40	189025615	-	TPASS_0382	-	hypothetical protein
380	 58.22	+1	409349..409798	+	149	189025616	-	TPASS_0383	-	hypothetical protein
381	 59.56	+1	409795..410934	+	379	189025617	-	TPASS_0384	-	hypothetical protein
382	 54.93	0	410947..411321	+	124	189025618	-	TPASS_0385	-	hypothetical protein
383	 52.03	0	411305..412684	+	459	189025619	murF	TPASS_0386	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine
384	 42.42	-2	412681..413835	+	384	189025620	ftsW	TPASS_0387	-	cell division protein
385	 45.83	-1	413813..414628	+	271	189025621	ftsQ	TPASS_0388	-	cell division protein
386	 49.32	0	414641..415885	+	414	189025622	ftsA	TPASS_0389	-	cell division protein
387	 50.28	0	415931..417187	+	418	189025623	ftsZ	TPASS_0390	-	cell division protein
388	 50.38	0	417184..418104	+	306	189025624	codV	TPASS_0391	-	integrase/recombinase
389	 50.62	0	417887..418846	+	319	189025625	-	TPASS_0392	-	hypothetical protein
390	 49.72	0	418843..419751	+	302	189025626	smf	TPASS_0393	-	protein Smf
391	 47.86	-1	419784..421979	+	731	189025627	topA	TPASS_0394	-	DNA topoisomerase I
392	 51.79	0	421972..422865	+	297	189025628	xprB	TPASS_0395	-	integrase/recombinase
393	 48.18	-1	423013..423423	+	136	189025629	flgB	TPASS_0396	-	flagellar basal-body rod protein
394	 50.77	0	423508..423897	+	129	189025630	flgC	TPASS_0397	-	flagellar basal-body rod protein
395	 48.00	-1	423953..424327	+	124	189025631	fliE	TPASS_0398	-	flagellar hook-basal body complex protein
396	 50.12	0	424444..426147	+	567	189025632	fliF	TPASS_0399	-	flagellar basal-body M ring protein
397	 45.51	-1	426152..427210	+	352	189025633	fliG2	TPASS_0400	-	flagellar motor switch protein
398	 51.08	0	427258..428187	+	309	189025634	fliH	TPASS_0401	-	flagellar assembly protein
399	 55.36	0	428215..429558	+	447	189025635	fliI	TPASS_0402	-	flagellum-specific ATP synthase
400	 53.64	0	429587..430039	+	150	189025636	-	TPASS_0403	-	possible flagellar protein
401	 54.68	0	430036..430569	-	177	189025637	-	TPASS_0404	-	hypothetical protein
402	 48.22	-1	430566..431015	-	149	189025638	-	TPASS_0405	-	possible protein McbG
403	 53.16	0	431206..432012	+	268	189025639	murI	TPASS_0406	-	glutamate racemase
404	 56.15	0	432140..432814	+	224	189025640	gph1	TPASS_0407	-	phosphoglycolate phosphatase
405	 50.35	0	432893..436147	+	1084	189025641	-	TPASS_0408	-	hypothetical protein
406	 52.15	0	436187..436372	+	61	189025642	-	TPASS_0409	-	hypothetical protein
407	 53.60	0	436637..438388	+	583	189025643	secD	TPASS_0410	-	protein-export membrane protein
408	 54.24	0	438385..439647	+	420	189025644	secF	TPASS_0411	-	protein-export membrane protein
409	 47.39	-1	439723..440028	-	101	189025645	-	TPASS_0412	-	hypothetical protein
410	 54.50	0	440047..441945	-	632	189025646	-	TPASS_0413	-	phosphoglucomutase
411	 56.19	0	442048..443403	+	451	189025647	dagA	TPASS_0414	-	D-alanine glycine permease
412	 59.36	+1	443384..443917	+	177	189025648	-	TPASS_0415	-	hypothetical protein
413	 55.04	0	443864..445222	-	452	189025649	ffh	TPASS_0416	-	signal recognition particle protein
414	 57.38	+1	445215..446894	-	559	189025650	cutE	TPASS_0417	-	apolipoprotein N-acyltransferase
415	 54.52	0	446921..448114	+	397	189025651	-	TPASS_0418	-	galactokinase
416	 58.51	+1	448111..448674	+	187	189025652	-	TPASS_0419	-	possible survival protein
417	 58.77	+1	448655..448882	+	75	189025653	-	TPASS_0420	-	hypothetical protein
418	 55.41	0	449016..451067	+	683	189025654	-	TPASS_0421	-	hypothetical protein
419	 57.21	0	451051..452076	+	341	189025655	-	TPASS_0422	-	hypothetical protein
420	 55.64	0	452101..452907	+	268	189025656	-	TPASS_0423	-	hypothetical protein
421	 56.65	0	453110..453808	+	232	189025657	-	TPASS_0424	-	possible V-type ATPase, subunit E
422	 60.15	+1	453786..454046	+	86	189025658	-	TPASS_0425	-	hypothetical protein
423	 54.01	0	454188..455957	+	589	189025659	atpA1	TPASS_0426	-	V-type ATPase, subunit A
424	 50.89	0	455961..457253	+	430	189025660	atpB1	TPASS_0427	-	V-type ATPase, subunit B
425	 50.56	0	457265..457885	+	206	189025661	atpD1	TPASS_0428	-	V-type ATPase, subunit D
426	 53.24	0	457882..459750	+	622	189025662	atpI1	TPASS_0429	-	V-type ATPase, subunit I
427	 54.37	0	459787..460209	+	140	189025663	atpK1	TPASS_0430	-	V-type ATPase, subunit K
428	 57.54	+1	460243..461064	+	273	189025664	-	TPASS_0431	-	hypothetical protein
429	 56.70	0	461107..461658	+	183	189025665	-	TPASS_0432	-	hypothetical protein
430	 61.16	+1	461713..463527	+	604	189025666	arp	TPASS_0433	-	acidic repeat protein
431	 55.84	0	463624..464094	-	156	189025667	tpp17	TPASS_0435	-	lipoprotein, 17 kDa
432	 59.10	+1	464225..465307	-	360	189025668	-	TPASS_0436	-	hypothetical protein
433	 53.86	0	465273..465803	-	176	189025669	-	TPASS_0437	-	hypothetical protein
434	 58.40	+1	465833..466642	+	269	189025670	-	TPASS_0438	-	hypothetical protein
435	 54.39	0	466729..467241	+	170	189025671	cheW2	TPASS_0439	-	purine-binding chemotaxis protein
436	 56.34	0	467331..468482	+	383	189025672	-	TPASS_0440	-	possible spore coat polysaccharide biosynthesis protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.