IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
282	 54.55	0	299761..300420	+	219	189025518	-	TPASS_0284	-	hypothetical protein
283	 48.80	0	300360..301439	+	359	189025519	-	TPASS_0285	-	hypothetical protein
284	 48.09	-1	301411..301776	+	121	189025520	-	TPASS_0286	-	hypothetical protein
285	 45.51	-1	301743..302366	+	207	189025521	-	TPASS_0287	-	hypothetical protein
286	 52.32	0	302366..303313	+	315	189025522	spsF	TPASS_0288	-	spore coat polysaccharide biosynthesis protein F
287	 48.10	-1	303336..304940	+	534	189025523	-	TPASS_0289	-	hypothetical protein
288	 46.40	-1	304995..305828	+	277	189025524	-	TPASS_0290	-	hypothetical protein
289	 50.68	0	305865..306746	+	293	189025525	-	TPASS_0291	-	hypothetical protein
290	 49.84	0	306737..307990	+	417	189025526	tpn50	TPASS_0292	-	outer membrane protein TpN50
291	 55.37	0	308002..308178	+	58	189025527	-	TPASS_0293	-	hypothetical protein
292	 47.31	-1	308156..309421	+	421	189025528	prs	TPASS_0294	-	phosphoribosyl pyrophosphate synthetase
293	 52.53	0	309440..310684	+	414	189025529	xylB	TPASS_0295	-	carhohydrate kinase
294	 51.89	0	310770..311405	+	211	189025530	-	TPASS_0296	-	hypothetical protein
295	 53.38	0	311369..312181	+	270	189025531	-	TPASS_0297	-	hypothetical protein
296	 54.84	0	312314..313345	+	343	189025532	tpn38b	TPASS_0298	-	exported protein TpN38b
297	 64.44	+2	313342..313566	+	74	189025533	-	TPASS_0299	-	hypothetical protein
298	 53.38	0	313551..315101	+	516	189025534	rbsA1	TPASS_0300	-	ribose/galactose ABC transporter, ATP-binding protein
299	 50.79	0	315098..316231	+	377	189025535	-	TPASS_0301	-	hypothetical integral membrane protein
300	 55.41	0	316222..317163	+	313	189025536	-	TPASS_0302	-	hypothetical integral membrane protein
301	 57.52	+1	317150..319096	-	648	189025537	mutL	TPASS_0303	-	DNA mismatch repair protein MutL
302	 56.27	0	319109..322225	-	1038	189025538	-	TPASS_0304	-	hypothetical protein
303	 58.25	+1	322152..323885	+	577	189025539	pyrG	TPASS_0305	-	CTP synthase
304	 53.66	0	324050..324664	+	204	189025540	rpsD	TPASS_0306	-	ribosomal protein S4
305	 55.39	0	324751..325779	+	342	189025541	-	TPASS_0307	-	hypothetical protein
306	 56.52	0	325754..326719	+	321	189025542	hisJ	TPASS_0308	-	amino acid ABC transporter, periplasmic binding protein
307	 57.14	0	326785..327603	+	272	189025543	-	TPASS_0309	-	amino acid ABC transporter, periplasmic binding protein
308	 59.11	+1	327572..327955	+	127	189025544	-	TPASS_0310	-	hypothetical protein
309	 55.56	0	327934..328077	-	47	189025545	-	TPASS_0311	-	hypothetical protein
310	 60.75	+1	328061..329074	+	337	189025546	-	TPASS_0312	-	hypothetical protein
311	 56.75	0	329165..331453	+	762	189025547	tprE	TPASS_0313	-	protein TprE
312	 59.18	+1	331510..331656	-	48	189025548	-	TPASS_0314	-	hypothetical protein
313	 60.80	+1	331679..332326	-	215	189025549	-	TPASS_0315	-	hypothetical protein
314	 56.27	0	333573..335843	-	756	189025550	tprG	TPASS_0317	-	protein TprG
315	 61.67	+2	335795..335974	-	59	189025551	-	TPASS_0318	-	hypothetical protein
316	 54.43	0	336003..337064	+	353	189025552	tmpC	TPASS_0319	-	membrane lipoprotein TmpC
317	 58.33	+1	337074..337229	+	51	189025553	-	TPASS_0320	-	hypothetical protein
318	 56.87	0	337305..338906	+	533	189025554	rbsA2	TPASS_0321	-	ribose/galactose ABC transporter, ATP-binding protein
319	 55.36	0	338816..340018	+	400	189025555	rbsC1	TPASS_0322	-	ribose/galactose ABC transporter, permease protein
320	 53.10	0	340015..340965	+	316	189025556	rbsC2	TPASS_0323	-	ribose/galactose ABC transporter, permease protein
321	 55.83	0	341069..342526	+	485	189025557	-	TPASS_0324	-	hypothetical protein
322	 54.53	0	342508..345474	+	988	189025558	-	TPASS_0325	-	hypothetical protein
323	 52.19	0	345456..348017	+	853	189025559	-	TPASS_0326	-	outer membrane protein
324	 51.06	0	348074..348592	+	172	189025560	ompH	TPASS_0327	-	cationic outer membrane protein
325	 54.09	0	348648..351350	+	900	189025561	mutS	TPASS_0328	-	DNA mismatch repair protein MutS
326	 54.38	0	351468..353192	+	574	189025562	glyA	TPASS_0329	-	serine hydroxymethyltransferase
327	 45.91	-1	353166..354962	-	598	189025563	-	TPASS_0330	-	possible cell division protein
328	 55.21	0	355192..356658	-	488	189025564	gnd	TPASS_0331	-	phosphogluconate dehydrogenase
329	 50.79	0	356674..356799	+	41	189025565	-	TPASS_0332	-	hypothetical protein
330	 50.22	0	356837..357529	+	230	189025566	-	TPASS_0333	-	hypothetical protein
331	 55.50	0	357554..358771	+	405	189025567	-	TPASS_0334	-	hypothetical protein
332	 57.83	+1	358768..359310	-	180	189025568	-	TPASS_0335	-	hypothetical protein
333	 51.91	0	359153..360853	+	566	189025569	-	TPASS_0336	-	possible protein ComE
334	 48.02	-1	360834..361691	+	285	189025570	ksgA	TPASS_0337	-	dimethyladenosine transferase
335	 49.28	0	361709..362197	+	162	189025571	-	TPASS_0338	-	hypothetical protein
336	 48.39	-1	362209..363204	+	331	189025572	-	TPASS_0339	-	hypothetical protein
337	 46.91	-1	363190..364662	-	490	189025573	folC	TPASS_0340	-	folylpolyglutamate synthetase
338	 49.79	0	364681..366126	+	481	189025574	murC	TPASS_0341	-	UDP-N-acetylmuramate--alanine ligase
339	 48.31	-1	366247..366807	+	186	189025575	cmk	TPASS_0342	-	cytidylate kinase
340	 49.52	0	366801..367634	+	277	189025576	-	TPASS_0343	-	possible A/G-specific adenine glycosylase
341	 49.66	0	367639..371061	-	1140	189025577	trcF	TPASS_0344	-	transcription-repair coupling factor
342	 50.73	0	371214..372305	+	363	189025578	mraY	TPASS_0345	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
343	 54.84	0	372462..373163	+	233	189025579	-	TPASS_0346	-	hypothetical protein
344	 57.40	+1	373132..373962	+	276	189025580	-	TPASS_0347	-	hypothetical protein
345	 59.86	+1	373696..375105	-	469	189025581	-	TPASS_0348	-	hypothetical protein
346	 57.63	+1	375075..375605	-	176	189025582	slyD	TPASS_0349	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
347	 55.71	0	375819..377105	+	428	189025583	proA	TPASS_0350	-	gamma-glutamyl phosphate reductase
348	 55.89	0	377102..377992	+	296	189025584	proB	TPASS_0351	-	glutamate 5-kinase
349	 52.71	0	378124..378381	+	85	189025585	-	TPASS_0352	-	hypothetical protein
350	 60.00	+1	378378..378887	-	169	189025586	rnhA	TPASS_0353	-	ribonuclease H
351	 47.21	-1	379150..379776	+	208	189025587	tmk	TPASS_0354	-	thymidylate kinase
352	 47.66	-1	379743..380126	-	127	189025588	-	TPASS_0355	-	hypothetical protein
353	 47.80	-1	380331..380648	+	105	189025589	-	TPASS_0356	-	possible RNA-binding protein
354	 58.84	+1	380750..381490	+	246	189025590	birA	TPASS_0357	-	biotin--acetyl-CoA-carboxylase ligase
355	 51.87	0	381495..383075	-	526	189025591	-	TPASS_0358	-	hypothetical protein
356	 52.52	0	383087..383722	-	211	189025592	-	TPASS_0359	-	hypothetical protein
357	 54.80	0	383933..384109	+	58	189025593	-	TPASS_0360	-	hypothetical protein
358	 57.60	+1	384106..384954	-	282	189025594	-	TPASS_0361	-	possible lysophosphatidic acid acyltransferase
359	 59.92	+1	385030..385266	+	78	189025595	rpmB	TPASS_0362	-	ribosomal protein L28
360	 54.24	0	385758..388196	+	812	189025596	cheA	TPASS_0363	-	chemotaxis histidine kinase
361	 52.12	0	388190..389557	+	455	189025597	cheW1	TPASS_0364	-	purine-binding chemotaxis protein
362	 52.26	0	389579..390043	+	154	189025598	cheX	TPASS_0365	-	chemotaxis protein
363	 48.28	-1	390056..390490	+	144	189025599	cheY	TPASS_0366	-	chemotaxis response regulator
364	 52.44	0	390794..393619	+	941	189025600	-	TPASS_0367	-	possible chromosome segregation protein
365	 59.23	+1	393619..393954	+	111	189025601	-	TPASS_0368	-	hypothetical protein
366	 59.06	+1	393951..395501	+	516	189025602	-	TPASS_0369	-	hypothetical protein
367	 50.60	0	395569..395985	-	138	189025603	-	TPASS_0370	-	hypothetical protein
368	 58.11	+1	395959..396834	+	291	189025604	-	TPASS_0371	-	hypothetical protein
369	 55.84	0	396956..397546	+	196	189025605	ctc	TPASS_0372	-	general stress protein
370	 56.90	0	397606..399039	+	477	189025606	-	TPASS_0373	-	hypothetical protein
371	 54.29	0	398975..401350	+	791	189025607	-	TPASS_0374	-	hypothetical protein
372	 50.00	0	401508..401717	+	69	189025608	-	TPASS_0375	-	hypothetical protein
373	 53.31	0	402033..402938	-	301	189025609	-	TPASS_0376	-	hypothetical protein
374	 55.56	0	403007..403132	+	41	189025610	-	TPASS_0377	-	hypothetical protein
375	 53.02	0	403129..403509	+	126	189025611	-	TPASS_0378	-	possible flagellar protein
376	 51.76	0	403584..406334	-	916	189025612	secA	TPASS_0379	-	preprotein translocase subunit
377	 54.81	0	406441..408261	-	606	189025613	-	TPASS_0380	-	possible DNA repair helicase
378	 53.97	0	408399..409115	-	238	189025614	-	TPASS_0381	-	hypothetical protein
379	 58.54	+1	409199..409321	+	40	189025615	-	TPASS_0382	-	hypothetical protein
380	 58.22	+1	409349..409798	+	149	189025616	-	TPASS_0383	-	hypothetical protein
381	 59.56	+1	409795..410934	+	379	189025617	-	TPASS_0384	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.