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Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 280 59.44 +1 298280..298999 + 239 189025516 - TPASS_0282 - hypothetical protein 281 51.67 0 299177..299656 + 159 189025517 kdtB TPASS_0283 - lipopolysaccharide core biosynthesis protein 282 54.55 0 299761..300420 + 219 189025518 - TPASS_0284 - hypothetical protein 283 48.80 0 300360..301439 + 359 189025519 - TPASS_0285 - hypothetical protein 284 48.09 -1 301411..301776 + 121 189025520 - TPASS_0286 - hypothetical protein 285 45.51 -1 301743..302366 + 207 189025521 - TPASS_0287 - hypothetical protein 286 52.32 0 302366..303313 + 315 189025522 spsF TPASS_0288 - spore coat polysaccharide biosynthesis protein F 287 48.10 -1 303336..304940 + 534 189025523 - TPASS_0289 - hypothetical protein 288 46.40 -1 304995..305828 + 277 189025524 - TPASS_0290 - hypothetical protein 289 50.68 0 305865..306746 + 293 189025525 - TPASS_0291 - hypothetical protein 290 49.84 0 306737..307990 + 417 189025526 tpn50 TPASS_0292 - outer membrane protein TpN50 291 55.37 0 308002..308178 + 58 189025527 - TPASS_0293 - hypothetical protein 292 47.31 -1 308156..309421 + 421 189025528 prs TPASS_0294 - phosphoribosyl pyrophosphate synthetase 293 52.53 0 309440..310684 + 414 189025529 xylB TPASS_0295 - carhohydrate kinase 294 51.89 0 310770..311405 + 211 189025530 - TPASS_0296 - hypothetical protein 295 53.38 0 311369..312181 + 270 189025531 - TPASS_0297 - hypothetical protein 296 54.84 0 312314..313345 + 343 189025532 tpn38b TPASS_0298 - exported protein TpN38b 297 64.44 +2 313342..313566 + 74 189025533 - TPASS_0299 - hypothetical protein 298 53.38 0 313551..315101 + 516 189025534 rbsA1 TPASS_0300 - ribose/galactose ABC transporter, ATP-binding protein 299 50.79 0 315098..316231 + 377 189025535 - TPASS_0301 - hypothetical integral membrane protein 300 55.41 0 316222..317163 + 313 189025536 - TPASS_0302 - hypothetical integral membrane protein 301 57.52 +1 317150..319096 - 648 189025537 mutL TPASS_0303 - DNA mismatch repair protein MutL 302 56.27 0 319109..322225 - 1038 189025538 - TPASS_0304 - hypothetical protein 303 58.25 +1 322152..323885 + 577 189025539 pyrG TPASS_0305 - CTP synthase 304 53.66 0 324050..324664 + 204 189025540 rpsD TPASS_0306 - ribosomal protein S4 305 55.39 0 324751..325779 + 342 189025541 - TPASS_0307 - hypothetical protein 306 56.52 0 325754..326719 + 321 189025542 hisJ TPASS_0308 - amino acid ABC transporter, periplasmic binding protein 307 57.14 0 326785..327603 + 272 189025543 - TPASS_0309 - amino acid ABC transporter, periplasmic binding protein 308 59.11 +1 327572..327955 + 127 189025544 - TPASS_0310 - hypothetical protein 309 55.56 0 327934..328077 - 47 189025545 - TPASS_0311 - hypothetical protein 310 60.75 +1 328061..329074 + 337 189025546 - TPASS_0312 - hypothetical protein 311 56.75 0 329165..331453 + 762 189025547 tprE TPASS_0313 - protein TprE 312 59.18 +1 331510..331656 - 48 189025548 - TPASS_0314 - hypothetical protein 313 60.80 +1 331679..332326 - 215 189025549 - TPASS_0315 - hypothetical protein 314 56.27 0 333573..335843 - 756 189025550 tprG TPASS_0317 - protein TprG 315 61.67 +2 335795..335974 - 59 189025551 - TPASS_0318 - hypothetical protein 316 54.43 0 336003..337064 + 353 189025552 tmpC TPASS_0319 - membrane lipoprotein TmpC 317 58.33 +1 337074..337229 + 51 189025553 - TPASS_0320 - hypothetical protein 318 56.87 0 337305..338906 + 533 189025554 rbsA2 TPASS_0321 - ribose/galactose ABC transporter, ATP-binding protein 319 55.36 0 338816..340018 + 400 189025555 rbsC1 TPASS_0322 - ribose/galactose ABC transporter, permease protein 320 53.10 0 340015..340965 + 316 189025556 rbsC2 TPASS_0323 - ribose/galactose ABC transporter, permease protein 321 55.83 0 341069..342526 + 485 189025557 - TPASS_0324 - hypothetical protein 322 54.53 0 342508..345474 + 988 189025558 - TPASS_0325 - hypothetical protein 323 52.19 0 345456..348017 + 853 189025559 - TPASS_0326 - outer membrane protein 324 51.06 0 348074..348592 + 172 189025560 ompH TPASS_0327 - cationic outer membrane protein 325 54.09 0 348648..351350 + 900 189025561 mutS TPASS_0328 - DNA mismatch repair protein MutS 326 54.38 0 351468..353192 + 574 189025562 glyA TPASS_0329 - serine hydroxymethyltransferase 327 45.91 -1 353166..354962 - 598 189025563 - TPASS_0330 - possible cell division protein 328 55.21 0 355192..356658 - 488 189025564 gnd TPASS_0331 - phosphogluconate dehydrogenase 329 50.79 0 356674..356799 + 41 189025565 - TPASS_0332 - hypothetical protein 330 50.22 0 356837..357529 + 230 189025566 - TPASS_0333 - hypothetical protein 331 55.50 0 357554..358771 + 405 189025567 - TPASS_0334 - hypothetical protein 332 57.83 +1 358768..359310 - 180 189025568 - TPASS_0335 - hypothetical protein 333 51.91 0 359153..360853 + 566 189025569 - TPASS_0336 - possible protein ComE 334 48.02 -1 360834..361691 + 285 189025570 ksgA TPASS_0337 - dimethyladenosine transferase 335 49.28 0 361709..362197 + 162 189025571 - TPASS_0338 - hypothetical protein 336 48.39 -1 362209..363204 + 331 189025572 - TPASS_0339 - hypothetical protein 337 46.91 -1 363190..364662 - 490 189025573 folC TPASS_0340 - folylpolyglutamate synthetase 338 49.79 0 364681..366126 + 481 189025574 murC TPASS_0341 - UDP-N-acetylmuramate--alanine ligase 339 48.31 -1 366247..366807 + 186 189025575 cmk TPASS_0342 - cytidylate kinase 340 49.52 0 366801..367634 + 277 189025576 - TPASS_0343 - possible A/G-specific adenine glycosylase 341 49.66 0 367639..371061 - 1140 189025577 trcF TPASS_0344 - transcription-repair coupling factor 342 50.73 0 371214..372305 + 363 189025578 mraY TPASS_0345 - phospho-N-acetylmuramoyl-pentapeptide-transferase 343 54.84 0 372462..373163 + 233 189025579 - TPASS_0346 - hypothetical protein 344 57.40 +1 373132..373962 + 276 189025580 - TPASS_0347 - hypothetical protein 345 59.86 +1 373696..375105 - 469 189025581 - TPASS_0348 - hypothetical protein 346 57.63 +1 375075..375605 - 176 189025582 slyD TPASS_0349 - peptidyl-prolyl cis-trans isomerase, FKBP-type 347 55.71 0 375819..377105 + 428 189025583 proA TPASS_0350 - gamma-glutamyl phosphate reductase 348 55.89 0 377102..377992 + 296 189025584 proB TPASS_0351 - glutamate 5-kinase 349 52.71 0 378124..378381 + 85 189025585 - TPASS_0352 - hypothetical protein 350 60.00 +1 378378..378887 - 169 189025586 rnhA TPASS_0353 - ribonuclease H 351 47.21 -1 379150..379776 + 208 189025587 tmk TPASS_0354 - thymidylate kinase 352 47.66 -1 379743..380126 - 127 189025588 - TPASS_0355 - hypothetical protein 353 47.80 -1 380331..380648 + 105 189025589 - TPASS_0356 - possible RNA-binding protein 354 58.84 +1 380750..381490 + 246 189025590 birA TPASS_0357 - biotin--acetyl-CoA-carboxylase ligase 355 51.87 0 381495..383075 - 526 189025591 - TPASS_0358 - hypothetical protein 356 52.52 0 383087..383722 - 211 189025592 - TPASS_0359 - hypothetical protein 357 54.80 0 383933..384109 + 58 189025593 - TPASS_0360 - hypothetical protein 358 57.60 +1 384106..384954 - 282 189025594 - TPASS_0361 - possible lysophosphatidic acid acyltransferase 359 59.92 +1 385030..385266 + 78 189025595 rpmB TPASS_0362 - ribosomal protein L28 360 54.24 0 385758..388196 + 812 189025596 cheA TPASS_0363 - chemotaxis histidine kinase 361 52.12 0 388190..389557 + 455 189025597 cheW1 TPASS_0364 - purine-binding chemotaxis protein 362 52.26 0 389579..390043 + 154 189025598 cheX TPASS_0365 - chemotaxis protein 363 48.28 -1 390056..390490 + 144 189025599 cheY TPASS_0366 - chemotaxis response regulator 364 52.44 0 390794..393619 + 941 189025600 - TPASS_0367 - possible chromosome segregation protein 365 59.23 +1 393619..393954 + 111 189025601 - TPASS_0368 - hypothetical protein 366 59.06 +1 393951..395501 + 516 189025602 - TPASS_0369 - hypothetical protein 367 50.60 0 395569..395985 - 138 189025603 - TPASS_0370 - hypothetical protein 368 58.11 +1 395959..396834 + 291 189025604 - TPASS_0371 - hypothetical protein 369 55.84 0 396956..397546 + 196 189025605 ctc TPASS_0372 - general stress protein 370 56.90 0 397606..399039 + 477 189025606 - TPASS_0373 - hypothetical protein 371 54.29 0 398975..401350 + 791 189025607 - TPASS_0374 - hypothetical protein 372 50.00 0 401508..401717 + 69 189025608 - TPASS_0375 - hypothetical protein 373 53.31 0 402033..402938 - 301 189025609 - TPASS_0376 - hypothetical protein 374 55.56 0 403007..403132 + 41 189025610 - TPASS_0377 - hypothetical protein 375 53.02 0 403129..403509 + 126 189025611 - TPASS_0378 - possible flagellar protein 376 51.76 0 403584..406334 - 916 189025612 secA TPASS_0379 - preprotein translocase subunit 377 54.81 0 406441..408261 - 606 189025613 - TPASS_0380 - possible DNA repair helicase 378 53.97 0 408399..409115 - 238 189025614 - TPASS_0381 - hypothetical protein 379 58.54 +1 409199..409321 + 40 189025615 - TPASS_0382 - hypothetical protein 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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