IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
224	 52.86	0	236991..237758	-	255	189025460	-	TPASS_0227	-	cobalt ABC transporter, ATP-binding protein
225	 55.64	0	237825..238640	-	271	189025461	-	TPASS_0228	-	possible biotin synthase
226	 55.52	0	238584..239417	+	277	189025462	-	TPASS_0229	-	DNA polymerase, bacteriophage-type
227	 56.33	0	239422..241395	+	657	189025463	priA	TPASS_0230	-	primosomal protein N
228	 54.99	0	241496..242146	+	216	189025464	-	TPASS_0231	-	hypothetical protein
229	 55.56	0	242246..242362	+	38	189025465	-	TPASS_0232	-	hypothetical protein
230	 45.05	-1	242393..242938	+	181	189025466	-	TPASS_0233	-	possible anti-sigma F factor antagonist
231	 49.71	0	243173..243343	+	56	189025467	rpmG	TPASS_0234	-	ribosomal protein L33
232	 53.89	0	243493..243672	+	59	189025468	secE	TPASS_0235	-	preprotein translocase subunit
233	 52.87	0	243682..244239	+	185	189025469	nusG	TPASS_0236	-	transcription antitermination protein
234	 54.20	0	244346..244786	+	146	189025470	rplK	TPASS_0237	-	ribosomal protein L11
235	 53.74	0	244783..245463	+	226	189025471	rplA	TPASS_0238	-	ribosomal protein L1
236	 54.70	0	245465..246007	+	180	189025472	rplJ	TPASS_0239	-	ribosomal protein L10
237	 52.05	0	246116..246505	+	129	189025473	rplL	TPASS_0240	-	ribosomal protein L7/L12
238	 49.93	0	246768..250304	+	1178	189025474	rpoB	TPASS_0241	-	DNA-directed RNA polymerase, beta subunit
239	 50.60	0	250317..254567	+	1416	189025475	rpoC	TPASS_0242	-	DNA-directed RNA polymerase, beta subunit
240	 54.40	0	254670..255044	+	124	189025476	rpsL	TPASS_0243	-	ribosomal protein S12
241	 54.99	0	255066..255536	+	156	189025477	rpsG	TPASS_0244	-	ribosomal protein S7
242	 52.00	0	255560..259015	+	1151	189025478	-	TPASS_0245	-	hypothetical protein
243	 46.49	-1	259161..260954	+	597	189025479	-	TPASS_0246	-	hypothetical protein
244	 48.23	-1	261005..262078	+	357	189025480	amiA	TPASS_0247	-	N-acetylmuramoyl-L-alanine amidase
245	 56.54	0	262145..262549	+	134	189025481	-	TPASS_0248	-	hypothetical protein
246	 54.42	0	262628..263680	+	350	189025482	flaA1	TPASS_0249	-	flagellar filament outer layer protein
247	 54.82	0	263731..263958	+	75	189025483	-	TPASS_0250a	-	hypothetical protein
248	 55.90	0	263793..264080	+	95	189025484	rpsT	TPASS_0250b	-	ribosomal protein S20
249	 54.72	0	264112..264429	+	105	189025485	-	TPASS_0251	-	DNA-binding protein II
250	 54.42	0	264419..266059	+	546	189025486	-	TPASS_0252	-	possible apolipoprotein N-acyltransferase
251	 51.93	0	266050..266463	+	137	189025487	-	TPASS_0253	-	hypothetical protein
252	 48.97	0	266700..268259	+	519	189025488	rho	TPASS_0254	-	transcription termination factor Rho
253	 49.02	0	268378..268581	+	67	189025489	rpmE	TPASS_0255	-	ribosomal protein L31
254	 47.77	-1	268626..269276	+	216	189025490	pgsA	TPASS_0256	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
255	 48.27	-1	269373..270443	+	356	189025491	glpQ	TPASS_0257	-	glycerophosphoryldiester phosphodiesterase
256	 52.88	0	270509..271219	-	236	189025492	-	TPASS_0258	-	hypothetical protein
257	 53.76	0	271298..271909	+	203	189025493	-	TPASS_0259	-	hypothetical protein
258	 56.94	0	272040..273386	-	448	189025494	-	TPASS_0260	-	hypothetical protein
259	 54.50	0	273501..274544	+	347	189025495	-	TPASS_0261	-	possible catabolite gene activator
260	 51.85	0	274522..275196	+	224	189025496	crp	TPASS_0262	-	catabolite gene activator
261	 57.98	+1	275211..276995	+	594	189025497	-	TPASS_0263	-	hypothetical protein
262	 56.77	0	277000..277656	+	218	189025498	deoC	TPASS_0264	-	deoxyribose-phosphate aldolase
263	 54.90	0	278088..279455	-	455	189025499	braC	TPASS_0265	-	amino acid ABC transporter, permease protein
264	 53.17	0	279506..279631	+	41	189025500	-	TPASS_0266	-	hypothetical protein
265	 51.37	0	284740..285105	+	121	189025501	-	TPASS_0267	-	hypothetical protein
266	 58.26	+1	285102..285755	+	217	189025502	-	TPASS_0268	-	hypothetical protein
267	 50.38	0	285765..287213	+	482	189025503	-	TPASS_0269	-	hypothetical protein
268	 54.84	0	287287..288723	+	478	189025504	pcnA	TPASS_0270	-	polynucleotide adenylyltransferase
269	 53.13	0	288720..289694	-	324	189025505	parB	TPASS_0271	-	chromosome partitioning protein
270	 48.16	-1	289681..290442	-	253	189025506	parA	TPASS_0272	-	chromosome partitioning protein
271	 53.54	0	290575..291366	+	263	189025507	-	TPASS_0273	-	hypothetical protein
272	 56.09	0	291404..291904	-	166	189025508	-	TPASS_0274	-	possible deoxycytidylate deaminase
273	 50.93	0	291993..292742	-	249	189025509	-	TPASS_0275	-	possible UDP-N-acetyl-D-mannosamine transferase
274	 56.72	0	292721..293605	-	294	189025510	-	TPASS_0276	-	hypothetical protein
275	 50.48	0	293778..295124	-	448	189025511	ctp	TPASS_0277	-	carboxyl-terminal protease
276	 61.24	+1	295252..295380	+	42	189025512	-	TPASS_0278	-	hypothetical protein
277	 55.25	0	295426..298017	+	863	189025513	rpsA	TPASS_0279	-	ribosomal protein S1
278	 58.91	+1	298014..298142	+	42	189025514	-	TPASS_0280	-	hypothetical protein
279	 58.14	+1	298159..298287	+	42	189025515	-	TPASS_0281	-	hypothetical protein
280	 59.44	+1	298280..298999	+	239	189025516	-	TPASS_0282	-	hypothetical protein
281	 51.67	0	299177..299656	+	159	189025517	kdtB	TPASS_0283	-	lipopolysaccharide core biosynthesis protein
282	 54.55	0	299761..300420	+	219	189025518	-	TPASS_0284	-	hypothetical protein
283	 48.80	0	300360..301439	+	359	189025519	-	TPASS_0285	-	hypothetical protein
284	 48.09	-1	301411..301776	+	121	189025520	-	TPASS_0286	-	hypothetical protein
285	 45.51	-1	301743..302366	+	207	189025521	-	TPASS_0287	-	hypothetical protein
286	 52.32	0	302366..303313	+	315	189025522	spsF	TPASS_0288	-	spore coat polysaccharide biosynthesis protein F
287	 48.10	-1	303336..304940	+	534	189025523	-	TPASS_0289	-	hypothetical protein
288	 46.40	-1	304995..305828	+	277	189025524	-	TPASS_0290	-	hypothetical protein
289	 50.68	0	305865..306746	+	293	189025525	-	TPASS_0291	-	hypothetical protein
290	 49.84	0	306737..307990	+	417	189025526	tpn50	TPASS_0292	-	outer membrane protein TpN50
291	 55.37	0	308002..308178	+	58	189025527	-	TPASS_0293	-	hypothetical protein
292	 47.31	-1	308156..309421	+	421	189025528	prs	TPASS_0294	-	phosphoribosyl pyrophosphate synthetase
293	 52.53	0	309440..310684	+	414	189025529	xylB	TPASS_0295	-	carhohydrate kinase
294	 51.89	0	310770..311405	+	211	189025530	-	TPASS_0296	-	hypothetical protein
295	 53.38	0	311369..312181	+	270	189025531	-	TPASS_0297	-	hypothetical protein
296	 54.84	0	312314..313345	+	343	189025532	tpn38b	TPASS_0298	-	exported protein TpN38b
297	 64.44	+2	313342..313566	+	74	189025533	-	TPASS_0299	-	hypothetical protein
298	 53.38	0	313551..315101	+	516	189025534	rbsA1	TPASS_0300	-	ribose/galactose ABC transporter, ATP-binding protein
299	 50.79	0	315098..316231	+	377	189025535	-	TPASS_0301	-	hypothetical integral membrane protein
300	 55.41	0	316222..317163	+	313	189025536	-	TPASS_0302	-	hypothetical integral membrane protein
301	 57.52	+1	317150..319096	-	648	189025537	mutL	TPASS_0303	-	DNA mismatch repair protein MutL
302	 56.27	0	319109..322225	-	1038	189025538	-	TPASS_0304	-	hypothetical protein
303	 58.25	+1	322152..323885	+	577	189025539	pyrG	TPASS_0305	-	CTP synthase
304	 53.66	0	324050..324664	+	204	189025540	rpsD	TPASS_0306	-	ribosomal protein S4
305	 55.39	0	324751..325779	+	342	189025541	-	TPASS_0307	-	hypothetical protein
306	 56.52	0	325754..326719	+	321	189025542	hisJ	TPASS_0308	-	amino acid ABC transporter, periplasmic binding protein
307	 57.14	0	326785..327603	+	272	189025543	-	TPASS_0309	-	amino acid ABC transporter, periplasmic binding protein
308	 59.11	+1	327572..327955	+	127	189025544	-	TPASS_0310	-	hypothetical protein
309	 55.56	0	327934..328077	-	47	189025545	-	TPASS_0311	-	hypothetical protein
310	 60.75	+1	328061..329074	+	337	189025546	-	TPASS_0312	-	hypothetical protein
311	 56.75	0	329165..331453	+	762	189025547	tprE	TPASS_0313	-	protein TprE
312	 59.18	+1	331510..331656	-	48	189025548	-	TPASS_0314	-	hypothetical protein
313	 60.80	+1	331679..332326	-	215	189025549	-	TPASS_0315	-	hypothetical protein
314	 56.27	0	333573..335843	-	756	189025550	tprG	TPASS_0317	-	protein TprG
315	 61.67	+2	335795..335974	-	59	189025551	-	TPASS_0318	-	hypothetical protein
316	 54.43	0	336003..337064	+	353	189025552	tmpC	TPASS_0319	-	membrane lipoprotein TmpC
317	 58.33	+1	337074..337229	+	51	189025553	-	TPASS_0320	-	hypothetical protein
318	 56.87	0	337305..338906	+	533	189025554	rbsA2	TPASS_0321	-	ribose/galactose ABC transporter, ATP-binding protein
319	 55.36	0	338816..340018	+	400	189025555	rbsC1	TPASS_0322	-	ribose/galactose ABC transporter, permease protein
320	 53.10	0	340015..340965	+	316	189025556	rbsC2	TPASS_0323	-	ribose/galactose ABC transporter, permease protein
321	 55.83	0	341069..342526	+	485	189025557	-	TPASS_0324	-	hypothetical protein
322	 54.53	0	342508..345474	+	988	189025558	-	TPASS_0325	-	hypothetical protein
323	 52.19	0	345456..348017	+	853	189025559	-	TPASS_0326	-	outer membrane protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.