IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
186	 54.07	0	206179..206805	+	208	189025422	rplC	TPASS_0189	-	ribosomal protein L3
187	 49.31	0	206819..207469	+	216	189025423	rplD	TPASS_0190	-	ribosomal protein L4
188	 52.28	0	207456..207740	+	94	189025424	rplW	TPASS_0191	-	ribosomal protein L23
189	 56.20	0	207796..208617	+	273	189025425	rplB	TPASS_0192	-	ribosomal protein L2
190	 47.22	-1	208627..208914	+	95	189025426	rpsS	TPASS_0193	-	ribosomal protein S19
191	 52.80	0	208923..209297	+	124	189025427	rplV	TPASS_0194	-	ribosomal protein L22
192	 51.34	0	209281..210024	+	247	189025428	rpsC	TPASS_0195	-	ribosomal protein S3
193	 52.86	0	210028..210447	+	139	189025429	rplP	TPASS_0196	-	ribosomal protein L16
194	 45.21	-1	210462..210680	+	72	189025430	rpmC	TPASS_0197	-	ribosomal protein L29
195	 52.94	0	210695..210949	+	84	189025431	rpsQ	TPASS_0198	-	ribosomal protein S17
196	 48.51	-1	210962..211330	+	122	189025432	rplN	TPASS_0199	-	ribosomal protein L14
197	 50.64	0	211342..211653	+	103	189025433	rplX	TPASS_0200	-	ribosomal protein L24
198	 46.42	-1	211650..212207	+	185	189025434	rplE	TPASS_0201	-	ribosomal protein L5
199	 53.76	0	212219..212404	+	61	189025435	rpsN	TPASS_0202	-	ribosomal protein S14
200	 49.12	0	212420..212818	+	132	189025436	rpsH	TPASS_0203	-	ribosomal protein S8
201	 51.85	0	212828..213367	+	179	189025437	rplF	TPASS_0204	-	ribosomal protein L6
202	 49.86	0	213376..213738	+	120	189025438	rplR	TPASS_0205	-	ribosomal protein L18
203	 51.83	0	213747..214265	+	172	189025439	rpsE	TPASS_0206a	-	ribosomal protein S5
204	 56.99	0	214268..214453	+	61	189025440	rpmD	TPASS_0206b	-	ribosomal protein L30
205	 56.71	0	214453..214914	+	153	189025441	rplO	TPASS_0207	-	ribosomal protein L15
206	 49.08	0	214922..216274	+	450	189025442	secY	TPASS_0208	-	preprotein translocase subunit
207	 40.35	-2	216279..216392	+	37	189025443	rpmJ1	TPASS_0209	-	ribosomal protein L36
208	 46.99	-1	216408..216773	+	121	189025444	rpsM	TPASS_0210	-	ribosomal protein S13
209	 52.23	0	216791..217171	+	126	189025445	rpsK	TPASS_0211	-	ribosomal protein S11
210	 49.34	0	217186..218241	+	351	189025446	rpoA	TPASS_0212	-	DNA-directed RNA polymerase, alpha subunit
211	 52.32	0	218231..218725	+	164	189025447	rplQ	TPASS_0213	-	ribosomal protein L17
212	 57.58	+1	218749..218946	+	65	189025448	-	TPASS_0214	-	hypothetical protein
213	 57.62	+1	219152..219814	+	220	189025449	grpE	TPASS_0215	-	chaperone protein GrpE
214	 51.57	0	219930..221837	+	635	189025450	dnaK	TPASS_0216	-	heat shock protein 70
215	 46.39	-1	223384..224853	+	489	189025451	-	TPASS_0218	-	possible sigma factor SigB regulation protein
216	 41.67	-2	224857..227004	+	715	189025452	-	TPASS_0219	-	possible sigma factor SigB regulation protein
217	 48.62	0	227033..227359	+	108	189025453	spoIIAA1	TPASS_0220	-	anti-sigma F factor antagonist
218	 55.94	0	227360..228142	+	260	189025454	-	TPASS_0221	-	possible D,D-carboxypeptidase
219	 52.57	0	228152..228598	+	148	189025455	-	TPASS_0222	-	hypothetical protein
220	 53.29	0	228866..230173	+	435	189025456	-	TPASS_0223	-	aspartate aminotransferase TpAAT
221	 48.57	0	230210..230314	+	34	189025457	-	TPASS_0224	-	hypothetical protein
222	 51.42	0	230360..231100	+	246	189025458	-	TPASS_0225	-	leucine-rich repeat protein TpLRR
223	 49.05	0	236252..236938	-	228	189025459	-	TPASS_0226	-	hypothetical protein
224	 52.86	0	236991..237758	-	255	189025460	-	TPASS_0227	-	cobalt ABC transporter, ATP-binding protein
225	 55.64	0	237825..238640	-	271	189025461	-	TPASS_0228	-	possible biotin synthase
226	 55.52	0	238584..239417	+	277	189025462	-	TPASS_0229	-	DNA polymerase, bacteriophage-type
227	 56.33	0	239422..241395	+	657	189025463	priA	TPASS_0230	-	primosomal protein N
228	 54.99	0	241496..242146	+	216	189025464	-	TPASS_0231	-	hypothetical protein
229	 55.56	0	242246..242362	+	38	189025465	-	TPASS_0232	-	hypothetical protein
230	 45.05	-1	242393..242938	+	181	189025466	-	TPASS_0233	-	possible anti-sigma F factor antagonist
231	 49.71	0	243173..243343	+	56	189025467	rpmG	TPASS_0234	-	ribosomal protein L33
232	 53.89	0	243493..243672	+	59	189025468	secE	TPASS_0235	-	preprotein translocase subunit
233	 52.87	0	243682..244239	+	185	189025469	nusG	TPASS_0236	-	transcription antitermination protein
234	 54.20	0	244346..244786	+	146	189025470	rplK	TPASS_0237	-	ribosomal protein L11
235	 53.74	0	244783..245463	+	226	189025471	rplA	TPASS_0238	-	ribosomal protein L1
236	 54.70	0	245465..246007	+	180	189025472	rplJ	TPASS_0239	-	ribosomal protein L10
237	 52.05	0	246116..246505	+	129	189025473	rplL	TPASS_0240	-	ribosomal protein L7/L12
238	 49.93	0	246768..250304	+	1178	189025474	rpoB	TPASS_0241	-	DNA-directed RNA polymerase, beta subunit
239	 50.60	0	250317..254567	+	1416	189025475	rpoC	TPASS_0242	-	DNA-directed RNA polymerase, beta subunit
240	 54.40	0	254670..255044	+	124	189025476	rpsL	TPASS_0243	-	ribosomal protein S12
241	 54.99	0	255066..255536	+	156	189025477	rpsG	TPASS_0244	-	ribosomal protein S7
242	 52.00	0	255560..259015	+	1151	189025478	-	TPASS_0245	-	hypothetical protein
243	 46.49	-1	259161..260954	+	597	189025479	-	TPASS_0246	-	hypothetical protein
244	 48.23	-1	261005..262078	+	357	189025480	amiA	TPASS_0247	-	N-acetylmuramoyl-L-alanine amidase
245	 56.54	0	262145..262549	+	134	189025481	-	TPASS_0248	-	hypothetical protein
246	 54.42	0	262628..263680	+	350	189025482	flaA1	TPASS_0249	-	flagellar filament outer layer protein
247	 54.82	0	263731..263958	+	75	189025483	-	TPASS_0250a	-	hypothetical protein
248	 55.90	0	263793..264080	+	95	189025484	rpsT	TPASS_0250b	-	ribosomal protein S20
249	 54.72	0	264112..264429	+	105	189025485	-	TPASS_0251	-	DNA-binding protein II
250	 54.42	0	264419..266059	+	546	189025486	-	TPASS_0252	-	possible apolipoprotein N-acyltransferase
251	 51.93	0	266050..266463	+	137	189025487	-	TPASS_0253	-	hypothetical protein
252	 48.97	0	266700..268259	+	519	189025488	rho	TPASS_0254	-	transcription termination factor Rho
253	 49.02	0	268378..268581	+	67	189025489	rpmE	TPASS_0255	-	ribosomal protein L31
254	 47.77	-1	268626..269276	+	216	189025490	pgsA	TPASS_0256	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
255	 48.27	-1	269373..270443	+	356	189025491	glpQ	TPASS_0257	-	glycerophosphoryldiester phosphodiesterase
256	 52.88	0	270509..271219	-	236	189025492	-	TPASS_0258	-	hypothetical protein
257	 53.76	0	271298..271909	+	203	189025493	-	TPASS_0259	-	hypothetical protein
258	 56.94	0	272040..273386	-	448	189025494	-	TPASS_0260	-	hypothetical protein
259	 54.50	0	273501..274544	+	347	189025495	-	TPASS_0261	-	possible catabolite gene activator
260	 51.85	0	274522..275196	+	224	189025496	crp	TPASS_0262	-	catabolite gene activator
261	 57.98	+1	275211..276995	+	594	189025497	-	TPASS_0263	-	hypothetical protein
262	 56.77	0	277000..277656	+	218	189025498	deoC	TPASS_0264	-	deoxyribose-phosphate aldolase
263	 54.90	0	278088..279455	-	455	189025499	braC	TPASS_0265	-	amino acid ABC transporter, permease protein
264	 53.17	0	279506..279631	+	41	189025500	-	TPASS_0266	-	hypothetical protein
265	 51.37	0	284740..285105	+	121	189025501	-	TPASS_0267	-	hypothetical protein
266	 58.26	+1	285102..285755	+	217	189025502	-	TPASS_0268	-	hypothetical protein
267	 50.38	0	285765..287213	+	482	189025503	-	TPASS_0269	-	hypothetical protein
268	 54.84	0	287287..288723	+	478	189025504	pcnA	TPASS_0270	-	polynucleotide adenylyltransferase
269	 53.13	0	288720..289694	-	324	189025505	parB	TPASS_0271	-	chromosome partitioning protein
270	 48.16	-1	289681..290442	-	253	189025506	parA	TPASS_0272	-	chromosome partitioning protein
271	 53.54	0	290575..291366	+	263	189025507	-	TPASS_0273	-	hypothetical protein
272	 56.09	0	291404..291904	-	166	189025508	-	TPASS_0274	-	possible deoxycytidylate deaminase
273	 50.93	0	291993..292742	-	249	189025509	-	TPASS_0275	-	possible UDP-N-acetyl-D-mannosamine transferase
274	 56.72	0	292721..293605	-	294	189025510	-	TPASS_0276	-	hypothetical protein
275	 50.48	0	293778..295124	-	448	189025511	ctp	TPASS_0277	-	carboxyl-terminal protease
276	 61.24	+1	295252..295380	+	42	189025512	-	TPASS_0278	-	hypothetical protein
277	 55.25	0	295426..298017	+	863	189025513	rpsA	TPASS_0279	-	ribosomal protein S1
278	 58.91	+1	298014..298142	+	42	189025514	-	TPASS_0280	-	hypothetical protein
279	 58.14	+1	298159..298287	+	42	189025515	-	TPASS_0281	-	hypothetical protein
280	 59.44	+1	298280..298999	+	239	189025516	-	TPASS_0282	-	hypothetical protein
281	 51.67	0	299177..299656	+	159	189025517	kdtB	TPASS_0283	-	lipopolysaccharide core biosynthesis protein
282	 54.55	0	299761..300420	+	219	189025518	-	TPASS_0284	-	hypothetical protein
283	 48.80	0	300360..301439	+	359	189025519	-	TPASS_0285	-	hypothetical protein
284	 48.09	-1	301411..301776	+	121	189025520	-	TPASS_0286	-	hypothetical protein
285	 45.51	-1	301743..302366	+	207	189025521	-	TPASS_0287	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.