version 1.0
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 180 56.62 0 200856..201701 - 281 189025416 - TPASS_0183 - hypothetical protein 181 55.27 0 201706..202170 - 154 189025417 smpB TPASS_0184 - small protein B 182 53.39 0 202258..202965 + 235 189025418 sip TPASS_0185 - signal peptidase I 183 54.48 0 203020..204201 + 393 189025419 - TPASS_0186 - possible oxygen-independent coproporphyrinogen III oxidase 184 51.88 0 204265..205752 + 495 189025420 tuf TPASS_0187 - translation elongation factor TU 185 52.75 0 205824..206132 + 102 189025421 rpsJ TPASS_0188 - ribosomal protein S10 186 54.07 0 206179..206805 + 208 189025422 rplC TPASS_0189 - ribosomal protein L3 187 49.31 0 206819..207469 + 216 189025423 rplD TPASS_0190 - ribosomal protein L4 188 52.28 0 207456..207740 + 94 189025424 rplW TPASS_0191 - ribosomal protein L23 189 56.20 0 207796..208617 + 273 189025425 rplB TPASS_0192 - ribosomal protein L2 190 47.22 -1 208627..208914 + 95 189025426 rpsS TPASS_0193 - ribosomal protein S19 191 52.80 0 208923..209297 + 124 189025427 rplV TPASS_0194 - ribosomal protein L22 192 51.34 0 209281..210024 + 247 189025428 rpsC TPASS_0195 - ribosomal protein S3 193 52.86 0 210028..210447 + 139 189025429 rplP TPASS_0196 - ribosomal protein L16 194 45.21 -1 210462..210680 + 72 189025430 rpmC TPASS_0197 - ribosomal protein L29 195 52.94 0 210695..210949 + 84 189025431 rpsQ TPASS_0198 - ribosomal protein S17 196 48.51 -1 210962..211330 + 122 189025432 rplN TPASS_0199 - ribosomal protein L14 197 50.64 0 211342..211653 + 103 189025433 rplX TPASS_0200 - ribosomal protein L24 198 46.42 -1 211650..212207 + 185 189025434 rplE TPASS_0201 - ribosomal protein L5 199 53.76 0 212219..212404 + 61 189025435 rpsN TPASS_0202 - ribosomal protein S14 200 49.12 0 212420..212818 + 132 189025436 rpsH TPASS_0203 - ribosomal protein S8 201 51.85 0 212828..213367 + 179 189025437 rplF TPASS_0204 - ribosomal protein L6 202 49.86 0 213376..213738 + 120 189025438 rplR TPASS_0205 - ribosomal protein L18 203 51.83 0 213747..214265 + 172 189025439 rpsE TPASS_0206a - ribosomal protein S5 204 56.99 0 214268..214453 + 61 189025440 rpmD TPASS_0206b - ribosomal protein L30 205 56.71 0 214453..214914 + 153 189025441 rplO TPASS_0207 - ribosomal protein L15 206 49.08 0 214922..216274 + 450 189025442 secY TPASS_0208 - preprotein translocase subunit 207 40.35 -2 216279..216392 + 37 189025443 rpmJ1 TPASS_0209 - ribosomal protein L36 208 46.99 -1 216408..216773 + 121 189025444 rpsM TPASS_0210 - ribosomal protein S13 209 52.23 0 216791..217171 + 126 189025445 rpsK TPASS_0211 - ribosomal protein S11 210 49.34 0 217186..218241 + 351 189025446 rpoA TPASS_0212 - DNA-directed RNA polymerase, alpha subunit 211 52.32 0 218231..218725 + 164 189025447 rplQ TPASS_0213 - ribosomal protein L17 212 57.58 +1 218749..218946 + 65 189025448 - TPASS_0214 - hypothetical protein 213 57.62 +1 219152..219814 + 220 189025449 grpE TPASS_0215 - chaperone protein GrpE 214 51.57 0 219930..221837 + 635 189025450 dnaK TPASS_0216 - heat shock protein 70 215 46.39 -1 223384..224853 + 489 189025451 - TPASS_0218 - possible sigma factor SigB regulation protein 216 41.67 -2 224857..227004 + 715 189025452 - TPASS_0219 - possible sigma factor SigB regulation protein 217 48.62 0 227033..227359 + 108 189025453 spoIIAA1 TPASS_0220 - anti-sigma F factor antagonist 218 55.94 0 227360..228142 + 260 189025454 - TPASS_0221 - possible D,D-carboxypeptidase 219 52.57 0 228152..228598 + 148 189025455 - TPASS_0222 - hypothetical protein 220 53.29 0 228866..230173 + 435 189025456 - TPASS_0223 - aspartate aminotransferase TpAAT 221 48.57 0 230210..230314 + 34 189025457 - TPASS_0224 - hypothetical protein 222 51.42 0 230360..231100 + 246 189025458 - TPASS_0225 - leucine-rich repeat protein TpLRR 223 49.05 0 236252..236938 - 228 189025459 - TPASS_0226 - hypothetical protein 224 52.86 0 236991..237758 - 255 189025460 - TPASS_0227 - cobalt ABC transporter, ATP-binding protein 225 55.64 0 237825..238640 - 271 189025461 - TPASS_0228 - possible biotin synthase 226 55.52 0 238584..239417 + 277 189025462 - TPASS_0229 - DNA polymerase, bacteriophage-type 227 56.33 0 239422..241395 + 657 189025463 priA TPASS_0230 - primosomal protein N 228 54.99 0 241496..242146 + 216 189025464 - TPASS_0231 - hypothetical protein 229 55.56 0 242246..242362 + 38 189025465 - TPASS_0232 - hypothetical protein 230 45.05 -1 242393..242938 + 181 189025466 - TPASS_0233 - possible anti-sigma F factor antagonist 231 49.71 0 243173..243343 + 56 189025467 rpmG TPASS_0234 - ribosomal protein L33 232 53.89 0 243493..243672 + 59 189025468 secE TPASS_0235 - preprotein translocase subunit 233 52.87 0 243682..244239 + 185 189025469 nusG TPASS_0236 - transcription antitermination protein 234 54.20 0 244346..244786 + 146 189025470 rplK TPASS_0237 - ribosomal protein L11 235 53.74 0 244783..245463 + 226 189025471 rplA TPASS_0238 - ribosomal protein L1 236 54.70 0 245465..246007 + 180 189025472 rplJ TPASS_0239 - ribosomal protein L10 237 52.05 0 246116..246505 + 129 189025473 rplL TPASS_0240 - ribosomal protein L7/L12 238 49.93 0 246768..250304 + 1178 189025474 rpoB TPASS_0241 - DNA-directed RNA polymerase, beta subunit 239 50.60 0 250317..254567 + 1416 189025475 rpoC TPASS_0242 - DNA-directed RNA polymerase, beta subunit 240 54.40 0 254670..255044 + 124 189025476 rpsL TPASS_0243 - ribosomal protein S12 241 54.99 0 255066..255536 + 156 189025477 rpsG TPASS_0244 - ribosomal protein S7 242 52.00 0 255560..259015 + 1151 189025478 - TPASS_0245 - hypothetical protein 243 46.49 -1 259161..260954 + 597 189025479 - TPASS_0246 - hypothetical protein 244 48.23 -1 261005..262078 + 357 189025480 amiA TPASS_0247 - N-acetylmuramoyl-L-alanine amidase 245 56.54 0 262145..262549 + 134 189025481 - TPASS_0248 - hypothetical protein 246 54.42 0 262628..263680 + 350 189025482 flaA1 TPASS_0249 - flagellar filament outer layer protein 247 54.82 0 263731..263958 + 75 189025483 - TPASS_0250a - hypothetical protein 248 55.90 0 263793..264080 + 95 189025484 rpsT TPASS_0250b - ribosomal protein S20 249 54.72 0 264112..264429 + 105 189025485 - TPASS_0251 - DNA-binding protein II 250 54.42 0 264419..266059 + 546 189025486 - TPASS_0252 - possible apolipoprotein N-acyltransferase 251 51.93 0 266050..266463 + 137 189025487 - TPASS_0253 - hypothetical protein 252 48.97 0 266700..268259 + 519 189025488 rho TPASS_0254 - transcription termination factor Rho 253 49.02 0 268378..268581 + 67 189025489 rpmE TPASS_0255 - ribosomal protein L31 254 47.77 -1 268626..269276 + 216 189025490 pgsA TPASS_0256 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 255 48.27 -1 269373..270443 + 356 189025491 glpQ TPASS_0257 - glycerophosphoryldiester phosphodiesterase 256 52.88 0 270509..271219 - 236 189025492 - TPASS_0258 - hypothetical protein 257 53.76 0 271298..271909 + 203 189025493 - TPASS_0259 - hypothetical protein 258 56.94 0 272040..273386 - 448 189025494 - TPASS_0260 - hypothetical protein 259 54.50 0 273501..274544 + 347 189025495 - TPASS_0261 - possible catabolite gene activator 260 51.85 0 274522..275196 + 224 189025496 crp TPASS_0262 - catabolite gene activator 261 57.98 +1 275211..276995 + 594 189025497 - TPASS_0263 - hypothetical protein 262 56.77 0 277000..277656 + 218 189025498 deoC TPASS_0264 - deoxyribose-phosphate aldolase 263 54.90 0 278088..279455 - 455 189025499 braC TPASS_0265 - amino acid ABC transporter, permease protein 264 53.17 0 279506..279631 + 41 189025500 - TPASS_0266 - hypothetical protein 265 51.37 0 284740..285105 + 121 189025501 - TPASS_0267 - hypothetical protein 266 58.26 +1 285102..285755 + 217 189025502 - TPASS_0268 - hypothetical protein 267 50.38 0 285765..287213 + 482 189025503 - TPASS_0269 - hypothetical protein 268 54.84 0 287287..288723 + 478 189025504 pcnA TPASS_0270 - polynucleotide adenylyltransferase 269 53.13 0 288720..289694 - 324 189025505 parB TPASS_0271 - chromosome partitioning protein 270 48.16 -1 289681..290442 - 253 189025506 parA TPASS_0272 - chromosome partitioning protein 271 53.54 0 290575..291366 + 263 189025507 - TPASS_0273 - hypothetical protein 272 56.09 0 291404..291904 - 166 189025508 - TPASS_0274 - possible deoxycytidylate deaminase 273 50.93 0 291993..292742 - 249 189025509 - TPASS_0275 - possible UDP-N-acetyl-D-mannosamine transferase 274 56.72 0 292721..293605 - 294 189025510 - TPASS_0276 - hypothetical protein 275 50.48 0 293778..295124 - 448 189025511 ctp TPASS_0277 - carboxyl-terminal protease 276 61.24 +1 295252..295380 + 42 189025512 - TPASS_0278 - hypothetical protein 277 55.25 0 295426..298017 + 863 189025513 rpsA TPASS_0279 - ribosomal protein S1 278 58.91 +1 298014..298142 + 42 189025514 - TPASS_0280 - hypothetical protein 279 58.14 +1 298159..298287 + 42 189025515 - TPASS_0281 - hypothetical protein 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0