IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 44.89	-1	170462..172321	-	619	189025380	-	TPASS_0147	-	possible alpha-amylase 1
145	 51.30	0	172318..172896	-	192	189025381	-	TPASS_0148	-	hypothetical protein
146	 50.17	0	172890..173483	-	197	189025382	-	TPASS_0149	-	hypothetical protein
147	 49.15	0	173476..173943	-	155	189025383	-	TPASS_0150	-	hypothetical protein
148	 54.51	0	173927..174946	-	339	189025384	-	TPASS_0151	-	hypothetical integral membrane protein
149	 57.41	+1	174933..176477	-	514	189025385	rnfC	TPASS_0152	-	nitrogen fixation protein
150	 54.88	0	176553..177044	-	163	189025386	-	TPASS_0153	-	hypothetical protein
151	 58.57	+1	177269..178306	+	345	189025387	-	TPASS_0154	-	hypothetical protein
152	 52.33	0	178312..179427	+	371	189025388	-	TPASS_0155	-	fibronectin binding protein
153	 51.11	0	179468..179872	-	134	189025389	-	TPASS_0156	-	hypothetical protein
154	 50.17	0	179869..180771	-	300	189025390	-	TPASS_0157	-	hypothetical protein
155	 48.76	0	180768..181454	-	228	189025391	-	TPASS_0158	-	hypothetical protein
156	 51.51	0	181458..182486	-	342	189025392	-	TPASS_0159	-	hypothetical protein
157	 55.99	0	182602..184455	-	617	189025393	proS	TPASS_0160	-	prolyl-tRNA synthetase
158	 55.91	0	184458..184550	-	30	189025394	-	TPASS_0161	-	hypothetical protein
159	 58.59	+1	184567..185619	-	350	189025395	ruvB	TPASS_0162	-	Holliday junction DNA helicase, subunit B
160	 53.51	0	185794..186720	+	308	189025396	troA	TPASS_0163	-	ABC transporter, periplasmic binding protein
161	 53.43	0	186868..187668	+	266	189025397	troB	TPASS_0164	-	ABC transporter, ATP-binding protein
162	 51.62	0	187640..188536	+	298	189025398	troC	TPASS_0165	-	ABC transporter, permease protein
163	 52.26	0	188540..189643	+	367	189025399	troD	TPASS_0166	-	ABC transporter, permease protein
164	 50.87	0	189653..190114	+	153	189025400	troR	TPASS_0167	-	cation-activated repressor protein
165	 51.46	0	190194..190949	+	251	189025401	pgm	TPASS_0168	-	phosphoglycerate mutase
166	 55.56	0	191173..191271	+	32	189025402	-	TPASS_0169	-	hypothetical protein
167	 54.81	0	191268..192077	+	269	189025403	pfs	TPASS_0170	-	protein Pfs
168	 52.68	0	192177..192605	+	142	189025404	tpp15	TPASS_0171	-	lipoprotein, 15 kDa
169	 54.73	0	192753..193280	-	175	189025405	-	TPASS_0172	-	hypothetical protein
170	 50.88	0	193315..193998	-	227	189025406	-	TPASS_0173	-	hypothetical protein
171	 44.25	-1	193967..194809	-	280	189025407	-	TPASS_0174	-	hypothetical protein
172	 43.60	-2	194559..195191	-	210	189025408	-	TPASS_0175	-	hypothetical protein
173	 45.69	-1	195222..195488	-	88	189025409	-	TPASS_0176	-	hypothetical protein
174	 48.74	0	195485..196795	-	436	189025410	-	TPASS_0177	-	hypothetical protein
175	 57.93	+1	196889..197815	-	308	189025411	-	TPASS_0178	-	hypothetical protein
176	 60.83	+1	197815..199698	-	627	189025412	-	TPASS_0179	-	hypothetical protein
177	 59.12	+1	199640..199798	-	52	189025413	-	TPASS_0180	-	hypothetical protein
178	 56.08	0	199791..200234	+	147	189025414	-	TPASS_0181	-	hypothetical protein
179	 60.26	+1	200074..200853	+	259	189025415	-	TPASS_0182	-	hypothetical protein
180	 56.62	0	200856..201701	-	281	189025416	-	TPASS_0183	-	hypothetical protein
181	 55.27	0	201706..202170	-	154	189025417	smpB	TPASS_0184	-	small protein B
182	 53.39	0	202258..202965	+	235	189025418	sip	TPASS_0185	-	signal peptidase I
183	 54.48	0	203020..204201	+	393	189025419	-	TPASS_0186	-	possible oxygen-independent coproporphyrinogen III oxidase
184	 51.88	0	204265..205752	+	495	189025420	tuf	TPASS_0187	-	translation elongation factor TU
185	 52.75	0	205824..206132	+	102	189025421	rpsJ	TPASS_0188	-	ribosomal protein S10
186	 54.07	0	206179..206805	+	208	189025422	rplC	TPASS_0189	-	ribosomal protein L3
187	 49.31	0	206819..207469	+	216	189025423	rplD	TPASS_0190	-	ribosomal protein L4
188	 52.28	0	207456..207740	+	94	189025424	rplW	TPASS_0191	-	ribosomal protein L23
189	 56.20	0	207796..208617	+	273	189025425	rplB	TPASS_0192	-	ribosomal protein L2
190	 47.22	-1	208627..208914	+	95	189025426	rpsS	TPASS_0193	-	ribosomal protein S19
191	 52.80	0	208923..209297	+	124	189025427	rplV	TPASS_0194	-	ribosomal protein L22
192	 51.34	0	209281..210024	+	247	189025428	rpsC	TPASS_0195	-	ribosomal protein S3
193	 52.86	0	210028..210447	+	139	189025429	rplP	TPASS_0196	-	ribosomal protein L16
194	 45.21	-1	210462..210680	+	72	189025430	rpmC	TPASS_0197	-	ribosomal protein L29
195	 52.94	0	210695..210949	+	84	189025431	rpsQ	TPASS_0198	-	ribosomal protein S17
196	 48.51	-1	210962..211330	+	122	189025432	rplN	TPASS_0199	-	ribosomal protein L14
197	 50.64	0	211342..211653	+	103	189025433	rplX	TPASS_0200	-	ribosomal protein L24
198	 46.42	-1	211650..212207	+	185	189025434	rplE	TPASS_0201	-	ribosomal protein L5
199	 53.76	0	212219..212404	+	61	189025435	rpsN	TPASS_0202	-	ribosomal protein S14
200	 49.12	0	212420..212818	+	132	189025436	rpsH	TPASS_0203	-	ribosomal protein S8
201	 51.85	0	212828..213367	+	179	189025437	rplF	TPASS_0204	-	ribosomal protein L6
202	 49.86	0	213376..213738	+	120	189025438	rplR	TPASS_0205	-	ribosomal protein L18
203	 51.83	0	213747..214265	+	172	189025439	rpsE	TPASS_0206a	-	ribosomal protein S5
204	 56.99	0	214268..214453	+	61	189025440	rpmD	TPASS_0206b	-	ribosomal protein L30
205	 56.71	0	214453..214914	+	153	189025441	rplO	TPASS_0207	-	ribosomal protein L15
206	 49.08	0	214922..216274	+	450	189025442	secY	TPASS_0208	-	preprotein translocase subunit
207	 40.35	-2	216279..216392	+	37	189025443	rpmJ1	TPASS_0209	-	ribosomal protein L36
208	 46.99	-1	216408..216773	+	121	189025444	rpsM	TPASS_0210	-	ribosomal protein S13
209	 52.23	0	216791..217171	+	126	189025445	rpsK	TPASS_0211	-	ribosomal protein S11
210	 49.34	0	217186..218241	+	351	189025446	rpoA	TPASS_0212	-	DNA-directed RNA polymerase, alpha subunit
211	 52.32	0	218231..218725	+	164	189025447	rplQ	TPASS_0213	-	ribosomal protein L17
212	 57.58	+1	218749..218946	+	65	189025448	-	TPASS_0214	-	hypothetical protein
213	 57.62	+1	219152..219814	+	220	189025449	grpE	TPASS_0215	-	chaperone protein GrpE
214	 51.57	0	219930..221837	+	635	189025450	dnaK	TPASS_0216	-	heat shock protein 70
215	 46.39	-1	223384..224853	+	489	189025451	-	TPASS_0218	-	possible sigma factor SigB regulation protein
216	 41.67	-2	224857..227004	+	715	189025452	-	TPASS_0219	-	possible sigma factor SigB regulation protein
217	 48.62	0	227033..227359	+	108	189025453	spoIIAA1	TPASS_0220	-	anti-sigma F factor antagonist
218	 55.94	0	227360..228142	+	260	189025454	-	TPASS_0221	-	possible D,D-carboxypeptidase
219	 52.57	0	228152..228598	+	148	189025455	-	TPASS_0222	-	hypothetical protein
220	 53.29	0	228866..230173	+	435	189025456	-	TPASS_0223	-	aspartate aminotransferase TpAAT
221	 48.57	0	230210..230314	+	34	189025457	-	TPASS_0224	-	hypothetical protein
222	 51.42	0	230360..231100	+	246	189025458	-	TPASS_0225	-	leucine-rich repeat protein TpLRR
223	 49.05	0	236252..236938	-	228	189025459	-	TPASS_0226	-	hypothetical protein
224	 52.86	0	236991..237758	-	255	189025460	-	TPASS_0227	-	cobalt ABC transporter, ATP-binding protein
225	 55.64	0	237825..238640	-	271	189025461	-	TPASS_0228	-	possible biotin synthase
226	 55.52	0	238584..239417	+	277	189025462	-	TPASS_0229	-	DNA polymerase, bacteriophage-type
227	 56.33	0	239422..241395	+	657	189025463	priA	TPASS_0230	-	primosomal protein N
228	 54.99	0	241496..242146	+	216	189025464	-	TPASS_0231	-	hypothetical protein
229	 55.56	0	242246..242362	+	38	189025465	-	TPASS_0232	-	hypothetical protein
230	 45.05	-1	242393..242938	+	181	189025466	-	TPASS_0233	-	possible anti-sigma F factor antagonist
231	 49.71	0	243173..243343	+	56	189025467	rpmG	TPASS_0234	-	ribosomal protein L33
232	 53.89	0	243493..243672	+	59	189025468	secE	TPASS_0235	-	preprotein translocase subunit
233	 52.87	0	243682..244239	+	185	189025469	nusG	TPASS_0236	-	transcription antitermination protein
234	 54.20	0	244346..244786	+	146	189025470	rplK	TPASS_0237	-	ribosomal protein L11
235	 53.74	0	244783..245463	+	226	189025471	rplA	TPASS_0238	-	ribosomal protein L1
236	 54.70	0	245465..246007	+	180	189025472	rplJ	TPASS_0239	-	ribosomal protein L10
237	 52.05	0	246116..246505	+	129	189025473	rplL	TPASS_0240	-	ribosomal protein L7/L12
238	 49.93	0	246768..250304	+	1178	189025474	rpoB	TPASS_0241	-	DNA-directed RNA polymerase, beta subunit
239	 50.60	0	250317..254567	+	1416	189025475	rpoC	TPASS_0242	-	DNA-directed RNA polymerase, beta subunit
240	 54.40	0	254670..255044	+	124	189025476	rpsL	TPASS_0243	-	ribosomal protein S12
241	 54.99	0	255066..255536	+	156	189025477	rpsG	TPASS_0244	-	ribosomal protein S7
242	 52.00	0	255560..259015	+	1151	189025478	-	TPASS_0245	-	hypothetical protein
243	 46.49	-1	259161..260954	+	597	189025479	-	TPASS_0246	-	hypothetical protein
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.