version 1.0
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 105 47.02 -1 120341..121918 - 525 189025341 licC TPASS_0107 - protein LicC 106 51.08 0 122272..123657 - 461 189025342 pfk TPASS_0108 - pyrophosphate--fructose 6-phosphate 1-phosphotransferase 107 55.29 0 123759..124637 - 292 189025343 - TPASS_0109 - possible rRNA methylase 108 49.60 0 125178..126911 + 577 189025344 - TPASS_0110 - hypothetical protein 109 47.90 -1 126971..128398 + 475 189025345 rpoN TPASS_0111 - RNA polymerase sigma-54 factor 110 46.86 -1 128395..129747 - 450 189025346 pepC TPASS_0112 - aminopeptidase C 111 46.61 -1 129889..130875 + 328 189025347 hflK TPASS_0113 - Lambda CII stability-governing protein 112 49.60 0 130880..131875 + 331 189025348 hflC TPASS_0114 - Lambda CII stability-governing protein 113 54.32 0 131900..132709 - 269 189025349 thiD TPASS_0115 - phosphomethypyrimidine kinase 114 45.34 -1 132860..134866 + 668 189025350 uvrB TPASS_0116 - excinuclease ABC, subunit B 115 56.09 0 134898..136694 - 598 189025351 tprC TPASS_0117 - protein TprC 116 55.61 0 136774..138039 - 421 189025352 - TPASS_0118 - hypothetical protein 117 55.15 0 138137..138796 - 219 189025353 yaeE TPASS_0119 - amino acid ABC transporter, permease protein 118 51.98 0 138796..139605 - 269 189025354 - TPASS_0120 - amino acid ABC transporter, ATP-binding protein 119 57.21 0 139735..140802 + 355 189025355 - TPASS_0121 - hypothetical protein 120 53.96 0 141022..142878 - 618 189025356 pckA TPASS_0122 - phosphoenolpyruvate carboxykinase 121 48.89 0 142984..145554 + 856 189025357 - TPASS_0123 - hypothetical protein 122 52.57 0 145568..146674 + 368 189025358 - TPASS_0124 - possible GTP-binding protein 123 56.60 0 146751..147545 + 264 189025359 exoA TPASS_0125 - exodeoxyribonuclease 124 59.13 +1 147609..148484 - 291 189025360 - TPASS_0126 - hypothetical protein 125 54.86 0 149847..150227 + 126 189025361 - TPASS_0127 - hypothetical protein 126 62.64 +2 150729..151076 + 115 189025362 - TPASS_0128 - hypothetical protein 127 59.54 +1 151061..151537 + 158 189025363 - TPASS_0129 - hypothetical protein 128 58.81 +1 151866..152285 - 139 189025364 - TPASS_0130 - hypothetical protein 129 56.09 0 152357..154153 - 598 189025365 tprD TPASS_0131 - protein TprD 130 65.38 +2 154331..154408 - 25 189025366 - TPASS_0132 - hypothetical protein 131 56.77 0 154393..155625 - 410 189025367 - TPASS_0133 - hypothetical protein 132 57.29 +1 155622..156752 - 376 189025368 - TPASS_0134 - hypothetical protein 133 59.02 +1 156704..157645 - 313 189025369 - TPASS_0135 - hypothetical protein 134 60.72 +1 157985..159463 + 492 189025370 - TPASS_0136 - hypothetical protein 135 53.62 0 159442..159579 + 45 189025371 - TPASS_0137 - hypothetical protein 136 49.05 0 159716..160453 - 245 189025372 - TPASS_0138 - hypothetical protein 137 48.05 -1 160461..161153 - 230 189025373 - TPASS_0139 - hypothetical protein 138 47.16 -1 161193..162920 - 575 189025374 ntpJ TPASS_0140 - K+ transport protein 139 55.99 0 163092..163625 + 177 189025375 dat TPASS_0141 - methylated-DNA-protein-cysteine S-methyltransferase 140 51.73 0 163576..164238 - 220 189025376 - TPASS_0142 - possible thiamine ABC transporter, ATP-binding protein 141 53.20 0 164231..166012 - 593 189025377 - TPASS_0143 - possible thiamine ABC transporter, permease protein 142 57.74 +1 165970..166977 - 335 189025378 - TPASS_0144 - possible thiamine ABC transporter, thiamine-binding periplasmic protein 143 53.83 0 167087..169057 + 656 189025379 - TPASS_0145 - long-chain-fatty-acid--CoA ligase 144 44.89 -1 170462..172321 - 619 189025380 - TPASS_0147 - possible alpha-amylase 1 145 51.30 0 172318..172896 - 192 189025381 - TPASS_0148 - hypothetical protein 146 50.17 0 172890..173483 - 197 189025382 - TPASS_0149 - hypothetical protein 147 49.15 0 173476..173943 - 155 189025383 - TPASS_0150 - hypothetical protein 148 54.51 0 173927..174946 - 339 189025384 - TPASS_0151 - hypothetical integral membrane protein 149 57.41 +1 174933..176477 - 514 189025385 rnfC TPASS_0152 - nitrogen fixation protein 150 54.88 0 176553..177044 - 163 189025386 - TPASS_0153 - hypothetical protein 151 58.57 +1 177269..178306 + 345 189025387 - TPASS_0154 - hypothetical protein 152 52.33 0 178312..179427 + 371 189025388 - TPASS_0155 - fibronectin binding protein 153 51.11 0 179468..179872 - 134 189025389 - TPASS_0156 - hypothetical protein 154 50.17 0 179869..180771 - 300 189025390 - TPASS_0157 - hypothetical protein 155 48.76 0 180768..181454 - 228 189025391 - TPASS_0158 - hypothetical protein 156 51.51 0 181458..182486 - 342 189025392 - TPASS_0159 - hypothetical protein 157 55.99 0 182602..184455 - 617 189025393 proS TPASS_0160 - prolyl-tRNA synthetase 158 55.91 0 184458..184550 - 30 189025394 - TPASS_0161 - hypothetical protein 159 58.59 +1 184567..185619 - 350 189025395 ruvB TPASS_0162 - Holliday junction DNA helicase, subunit B 160 53.51 0 185794..186720 + 308 189025396 troA TPASS_0163 - ABC transporter, periplasmic binding protein 161 53.43 0 186868..187668 + 266 189025397 troB TPASS_0164 - ABC transporter, ATP-binding protein 162 51.62 0 187640..188536 + 298 189025398 troC TPASS_0165 - ABC transporter, permease protein 163 52.26 0 188540..189643 + 367 189025399 troD TPASS_0166 - ABC transporter, permease protein 164 50.87 0 189653..190114 + 153 189025400 troR TPASS_0167 - cation-activated repressor protein 165 51.46 0 190194..190949 + 251 189025401 pgm TPASS_0168 - phosphoglycerate mutase 166 55.56 0 191173..191271 + 32 189025402 - TPASS_0169 - hypothetical protein 167 54.81 0 191268..192077 + 269 189025403 pfs TPASS_0170 - protein Pfs 168 52.68 0 192177..192605 + 142 189025404 tpp15 TPASS_0171 - lipoprotein, 15 kDa 169 54.73 0 192753..193280 - 175 189025405 - TPASS_0172 - hypothetical protein 170 50.88 0 193315..193998 - 227 189025406 - TPASS_0173 - hypothetical protein 171 44.25 -1 193967..194809 - 280 189025407 - TPASS_0174 - hypothetical protein 172 43.60 -2 194559..195191 - 210 189025408 - TPASS_0175 - hypothetical protein 173 45.69 -1 195222..195488 - 88 189025409 - TPASS_0176 - hypothetical protein 174 48.74 0 195485..196795 - 436 189025410 - TPASS_0177 - hypothetical protein 175 57.93 +1 196889..197815 - 308 189025411 - TPASS_0178 - hypothetical protein 176 60.83 +1 197815..199698 - 627 189025412 - TPASS_0179 - hypothetical protein 177 59.12 +1 199640..199798 - 52 189025413 - TPASS_0180 - hypothetical protein 178 56.08 0 199791..200234 + 147 189025414 - TPASS_0181 - hypothetical protein 179 60.26 +1 200074..200853 + 259 189025415 - TPASS_0182 - hypothetical protein 180 56.62 0 200856..201701 - 281 189025416 - TPASS_0183 - hypothetical protein 181 55.27 0 201706..202170 - 154 189025417 smpB TPASS_0184 - small protein B 182 53.39 0 202258..202965 + 235 189025418 sip TPASS_0185 - signal peptidase I 183 54.48 0 203020..204201 + 393 189025419 - TPASS_0186 - possible oxygen-independent coproporphyrinogen III oxidase 184 51.88 0 204265..205752 + 495 189025420 tuf TPASS_0187 - translation elongation factor TU 185 52.75 0 205824..206132 + 102 189025421 rpsJ TPASS_0188 - ribosomal protein S10 186 54.07 0 206179..206805 + 208 189025422 rplC TPASS_0189 - ribosomal protein L3 187 49.31 0 206819..207469 + 216 189025423 rplD TPASS_0190 - ribosomal protein L4 188 52.28 0 207456..207740 + 94 189025424 rplW TPASS_0191 - ribosomal protein L23 189 56.20 0 207796..208617 + 273 189025425 rplB TPASS_0192 - ribosomal protein L2 190 47.22 -1 208627..208914 + 95 189025426 rpsS TPASS_0193 - ribosomal protein S19 191 52.80 0 208923..209297 + 124 189025427 rplV TPASS_0194 - ribosomal protein L22 192 51.34 0 209281..210024 + 247 189025428 rpsC TPASS_0195 - ribosomal protein S3 193 52.86 0 210028..210447 + 139 189025429 rplP TPASS_0196 - ribosomal protein L16 194 45.21 -1 210462..210680 + 72 189025430 rpmC TPASS_0197 - ribosomal protein L29 195 52.94 0 210695..210949 + 84 189025431 rpsQ TPASS_0198 - ribosomal protein S17 196 48.51 -1 210962..211330 + 122 189025432 rplN TPASS_0199 - ribosomal protein L14 197 50.64 0 211342..211653 + 103 189025433 rplX TPASS_0200 - ribosomal protein L24 198 46.42 -1 211650..212207 + 185 189025434 rplE TPASS_0201 - ribosomal protein L5 199 53.76 0 212219..212404 + 61 189025435 rpsN TPASS_0202 - ribosomal protein S14 200 49.12 0 212420..212818 + 132 189025436 rpsH TPASS_0203 - ribosomal protein S8 201 51.85 0 212828..213367 + 179 189025437 rplF TPASS_0204 - ribosomal protein L6 202 49.86 0 213376..213738 + 120 189025438 rplR TPASS_0205 - ribosomal protein L18 203 51.83 0 213747..214265 + 172 189025439 rpsE TPASS_0206a - ribosomal protein S5 204 56.99 0 214268..214453 + 61 189025440 rpmD TPASS_0206b - ribosomal protein L30 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0