IslandPathversion 1.0

IslandPath Analysis: Treponema pallidum subsp. pallidum SS14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.88 STD DEV: 4.36
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457
1028 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
90	 54.19	0	101619..102107	+	162	189025326	rpoE	TPASS_0092	-	RNA polymerase sigma-24 factor
91	 55.25	0	102091..102738	+	215	189025327	-	TPASS_0093	-	hypothetical protein
92	 51.43	0	102876..103886	+	336	189025328	pta	TPASS_0094	-	phosphate acetyltransferase
93	 56.65	0	103886..105832	+	648	189025329	-	TPASS_0095	-	hypothetical protein
94	 53.44	0	105906..106268	-	120	189025330	-	TPASS_0096	-	possible dnaK suppressor
95	 54.79	0	106438..106656	+	72	189025331	infA	TPASS_0097	-	translation initiation factor 1
96	 60.22	+1	106716..107366	-	216	189025332	-	TPASS_0098	-	possible heat-shock protein
97	 55.56	0	107370..108125	-	251	189025333	smbA	TPASS_0099	-	uridylate kinase
98	 54.89	0	108320..108922	+	200	189025334	-	TPASS_0100	-	possible thioredoxin
99	 55.35	0	108915..109709	+	264	189025335	ccdA	TPASS_0101	-	cytochrome c biogenesis protein
100	 45.09	-1	109747..111720	-	657	189025336	rep	TPASS_0102	-	Rep helicase, single-stranded DNA-dependent ATPase
101	 52.74	0	111785..113608	+	607	189025337	-	TPASS_0103	-	possible ATP-dependent DNA helicase
102	 48.43	-1	113855..115636	+	593	189025338	ushA	TPASS_0104	-	5'-nucleotidase
103	 44.76	-1	115803..118796	+	997	189025339	polA	TPASS_0105	-	DNA polymerase I
104	 49.18	0	118828..120360	-	510	189025340	-	TPASS_0106	-	possible carnitine transporter
105	 47.02	-1	120341..121918	-	525	189025341	licC	TPASS_0107	-	protein LicC
106	 51.08	0	122272..123657	-	461	189025342	pfk	TPASS_0108	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase
107	 55.29	0	123759..124637	-	292	189025343	-	TPASS_0109	-	possible rRNA methylase
108	 49.60	0	125178..126911	+	577	189025344	-	TPASS_0110	-	hypothetical protein
109	 47.90	-1	126971..128398	+	475	189025345	rpoN	TPASS_0111	-	RNA polymerase sigma-54 factor
110	 46.86	-1	128395..129747	-	450	189025346	pepC	TPASS_0112	-	aminopeptidase C
111	 46.61	-1	129889..130875	+	328	189025347	hflK	TPASS_0113	-	Lambda CII stability-governing protein
112	 49.60	0	130880..131875	+	331	189025348	hflC	TPASS_0114	-	Lambda CII stability-governing protein
113	 54.32	0	131900..132709	-	269	189025349	thiD	TPASS_0115	-	phosphomethypyrimidine kinase
114	 45.34	-1	132860..134866	+	668	189025350	uvrB	TPASS_0116	-	excinuclease ABC, subunit B
115	 56.09	0	134898..136694	-	598	189025351	tprC	TPASS_0117	-	protein TprC
116	 55.61	0	136774..138039	-	421	189025352	-	TPASS_0118	-	hypothetical protein
117	 55.15	0	138137..138796	-	219	189025353	yaeE	TPASS_0119	-	amino acid ABC transporter, permease protein
118	 51.98	0	138796..139605	-	269	189025354	-	TPASS_0120	-	amino acid ABC transporter, ATP-binding protein
119	 57.21	0	139735..140802	+	355	189025355	-	TPASS_0121	-	hypothetical protein
120	 53.96	0	141022..142878	-	618	189025356	pckA	TPASS_0122	-	phosphoenolpyruvate carboxykinase
121	 48.89	0	142984..145554	+	856	189025357	-	TPASS_0123	-	hypothetical protein
122	 52.57	0	145568..146674	+	368	189025358	-	TPASS_0124	-	possible GTP-binding protein
123	 56.60	0	146751..147545	+	264	189025359	exoA	TPASS_0125	-	exodeoxyribonuclease
124	 59.13	+1	147609..148484	-	291	189025360	-	TPASS_0126	-	hypothetical protein
125	 54.86	0	149847..150227	+	126	189025361	-	TPASS_0127	-	hypothetical protein
126	 62.64	+2	150729..151076	+	115	189025362	-	TPASS_0128	-	hypothetical protein
127	 59.54	+1	151061..151537	+	158	189025363	-	TPASS_0129	-	hypothetical protein
128	 58.81	+1	151866..152285	-	139	189025364	-	TPASS_0130	-	hypothetical protein
129	 56.09	0	152357..154153	-	598	189025365	tprD	TPASS_0131	-	protein TprD
130	 65.38	+2	154331..154408	-	25	189025366	-	TPASS_0132	-	hypothetical protein
131	 56.77	0	154393..155625	-	410	189025367	-	TPASS_0133	-	hypothetical protein
132	 57.29	+1	155622..156752	-	376	189025368	-	TPASS_0134	-	hypothetical protein
133	 59.02	+1	156704..157645	-	313	189025369	-	TPASS_0135	-	hypothetical protein
134	 60.72	+1	157985..159463	+	492	189025370	-	TPASS_0136	-	hypothetical protein
135	 53.62	0	159442..159579	+	45	189025371	-	TPASS_0137	-	hypothetical protein
136	 49.05	0	159716..160453	-	245	189025372	-	TPASS_0138	-	hypothetical protein
137	 48.05	-1	160461..161153	-	230	189025373	-	TPASS_0139	-	hypothetical protein
138	 47.16	-1	161193..162920	-	575	189025374	ntpJ	TPASS_0140	-	K+ transport protein
139	 55.99	0	163092..163625	+	177	189025375	dat	TPASS_0141	-	methylated-DNA-protein-cysteine S-methyltransferase
140	 51.73	0	163576..164238	-	220	189025376	-	TPASS_0142	-	possible thiamine ABC transporter, ATP-binding protein
141	 53.20	0	164231..166012	-	593	189025377	-	TPASS_0143	-	possible thiamine ABC transporter, permease protein
142	 57.74	+1	165970..166977	-	335	189025378	-	TPASS_0144	-	possible thiamine ABC transporter, thiamine-binding periplasmic protein
143	 53.83	0	167087..169057	+	656	189025379	-	TPASS_0145	-	long-chain-fatty-acid--CoA ligase
144	 44.89	-1	170462..172321	-	619	189025380	-	TPASS_0147	-	possible alpha-amylase 1
145	 51.30	0	172318..172896	-	192	189025381	-	TPASS_0148	-	hypothetical protein
146	 50.17	0	172890..173483	-	197	189025382	-	TPASS_0149	-	hypothetical protein
147	 49.15	0	173476..173943	-	155	189025383	-	TPASS_0150	-	hypothetical protein
148	 54.51	0	173927..174946	-	339	189025384	-	TPASS_0151	-	hypothetical integral membrane protein
149	 57.41	+1	174933..176477	-	514	189025385	rnfC	TPASS_0152	-	nitrogen fixation protein
150	 54.88	0	176553..177044	-	163	189025386	-	TPASS_0153	-	hypothetical protein
151	 58.57	+1	177269..178306	+	345	189025387	-	TPASS_0154	-	hypothetical protein
152	 52.33	0	178312..179427	+	371	189025388	-	TPASS_0155	-	fibronectin binding protein
153	 51.11	0	179468..179872	-	134	189025389	-	TPASS_0156	-	hypothetical protein
154	 50.17	0	179869..180771	-	300	189025390	-	TPASS_0157	-	hypothetical protein
155	 48.76	0	180768..181454	-	228	189025391	-	TPASS_0158	-	hypothetical protein
156	 51.51	0	181458..182486	-	342	189025392	-	TPASS_0159	-	hypothetical protein
157	 55.99	0	182602..184455	-	617	189025393	proS	TPASS_0160	-	prolyl-tRNA synthetase
158	 55.91	0	184458..184550	-	30	189025394	-	TPASS_0161	-	hypothetical protein
159	 58.59	+1	184567..185619	-	350	189025395	ruvB	TPASS_0162	-	Holliday junction DNA helicase, subunit B
160	 53.51	0	185794..186720	+	308	189025396	troA	TPASS_0163	-	ABC transporter, periplasmic binding protein
161	 53.43	0	186868..187668	+	266	189025397	troB	TPASS_0164	-	ABC transporter, ATP-binding protein
162	 51.62	0	187640..188536	+	298	189025398	troC	TPASS_0165	-	ABC transporter, permease protein
163	 52.26	0	188540..189643	+	367	189025399	troD	TPASS_0166	-	ABC transporter, permease protein
164	 50.87	0	189653..190114	+	153	189025400	troR	TPASS_0167	-	cation-activated repressor protein
165	 51.46	0	190194..190949	+	251	189025401	pgm	TPASS_0168	-	phosphoglycerate mutase
166	 55.56	0	191173..191271	+	32	189025402	-	TPASS_0169	-	hypothetical protein
167	 54.81	0	191268..192077	+	269	189025403	pfs	TPASS_0170	-	protein Pfs
168	 52.68	0	192177..192605	+	142	189025404	tpp15	TPASS_0171	-	lipoprotein, 15 kDa
169	 54.73	0	192753..193280	-	175	189025405	-	TPASS_0172	-	hypothetical protein
170	 50.88	0	193315..193998	-	227	189025406	-	TPASS_0173	-	hypothetical protein
171	 44.25	-1	193967..194809	-	280	189025407	-	TPASS_0174	-	hypothetical protein
172	 43.60	-2	194559..195191	-	210	189025408	-	TPASS_0175	-	hypothetical protein
173	 45.69	-1	195222..195488	-	88	189025409	-	TPASS_0176	-	hypothetical protein
174	 48.74	0	195485..196795	-	436	189025410	-	TPASS_0177	-	hypothetical protein
175	 57.93	+1	196889..197815	-	308	189025411	-	TPASS_0178	-	hypothetical protein
176	 60.83	+1	197815..199698	-	627	189025412	-	TPASS_0179	-	hypothetical protein
177	 59.12	+1	199640..199798	-	52	189025413	-	TPASS_0180	-	hypothetical protein
178	 56.08	0	199791..200234	+	147	189025414	-	TPASS_0181	-	hypothetical protein
179	 60.26	+1	200074..200853	+	259	189025415	-	TPASS_0182	-	hypothetical protein
180	 56.62	0	200856..201701	-	281	189025416	-	TPASS_0183	-	hypothetical protein
181	 55.27	0	201706..202170	-	154	189025417	smpB	TPASS_0184	-	small protein B
182	 53.39	0	202258..202965	+	235	189025418	sip	TPASS_0185	-	signal peptidase I
183	 54.48	0	203020..204201	+	393	189025419	-	TPASS_0186	-	possible oxygen-independent coproporphyrinogen III oxidase
184	 51.88	0	204265..205752	+	495	189025420	tuf	TPASS_0187	-	translation elongation factor TU
185	 52.75	0	205824..206132	+	102	189025421	rpsJ	TPASS_0188	-	ribosomal protein S10
186	 54.07	0	206179..206805	+	208	189025422	rplC	TPASS_0189	-	ribosomal protein L3
187	 49.31	0	206819..207469	+	216	189025423	rplD	TPASS_0190	-	ribosomal protein L4
188	 52.28	0	207456..207740	+	94	189025424	rplW	TPASS_0191	-	ribosomal protein L23
189	 56.20	0	207796..208617	+	273	189025425	rplB	TPASS_0192	-	ribosomal protein L2
52.88	MEAN

4.36	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.