version 1.0
Treponema pallidum subsp. pallidum SS14, complete genome - 1..1139457 1028 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 64 52.06 0 72344..72658 + 104 189025300 - TPASS_0066 - hypothetical protein 65 50.42 0 72646..73827 + 393 189025301 - TPASS_0067 - hypothetical protein 66 53.18 0 74008..75030 + 340 189025302 - TPASS_0068 - hypothetical protein 67 52.54 0 75086..75616 - 176 189025303 - TPASS_0069 - hypothetical protein 68 52.97 0 75466..75852 - 128 189025304 - TPASS_0070 - hypothetical protein 69 49.87 0 75903..78539 - 878 189025305 clpB TPASS_0071 - ATP-dependent Clp protease, subunit B 70 48.72 0 78743..79015 + 90 189025306 - TPASS_0072 - hypothetical protein 71 52.53 0 79085..80626 - 513 189025307 - TPASS_0073 - hypothetical protein 72 55.11 0 80931..82340 + 469 189025308 y4oP TPASS_0074 - sugar ABC transporter, periplasmic binding protein 73 49.38 0 82459..83349 + 296 189025309 y4oQ TPASS_0075 - sugar ABC transporter, permease protein 74 48.42 -1 83389..84210 + 273 189025310 y4oR TPASS_0076 - sugar ABC transporter, permease protein 75 50.22 0 84251..85867 + 538 189025311 cap TPASS_0077 - capsular polysaccharide biosynthesis protein 76 50.04 0 85872..87110 + 412 189025312 spsC TPASS_0078 - spore coat polysaccharide biosynthesis protein 77 50.16 0 87038..89260 + 740 189025313 - TPASS_0079 - hypothetical protein 78 42.95 -2 89257..89724 + 155 189025314 - TPASS_0080 - quinoline 2-oxidoreductase 79 46.64 -1 89731..90579 + 282 189025315 - TPASS_0081 - hypothetical protein 80 52.69 0 90626..92428 - 600 189025316 fhlA TPASS_0082 - formate hydrogenlyase transcriptional activator FhlA 81 54.18 0 93174..94454 + 426 189025317 - TPASS_0083 - hypothetical protein 82 53.42 0 94434..94667 - 77 189025318 - TPASS_0084 - hypothetical protein 83 49.66 0 94781..95227 - 148 189025319 ptsN1 TPASS_0085 - PTS system, nitrogen regulatory IIA component 84 53.65 0 95308..96252 + 314 189025320 - TPASS_0086 - hypothetical protein 85 57.41 +1 96255..96794 - 179 189025321 - TPASS_0087 - hypothetical protein 86 48.62 0 96778..97392 - 204 189025322 - TPASS_0088 - hypothetical protein 87 45.39 -1 97422..98657 - 411 189025323 - TPASS_0089 - cyclic nucleotide binding protein 88 57.75 +1 98740..99804 - 354 189025324 murB TPASS_0090 - UDP-N-acetylmuramate dehydrogenase 89 54.51 0 99986..101548 + 520 189025325 cysS TPASS_0091 - cysteinyl-tRNA synthetase 90 54.19 0 101619..102107 + 162 189025326 rpoE TPASS_0092 - RNA polymerase sigma-24 factor 91 55.25 0 102091..102738 + 215 189025327 - TPASS_0093 - hypothetical protein 92 51.43 0 102876..103886 + 336 189025328 pta TPASS_0094 - phosphate acetyltransferase 93 56.65 0 103886..105832 + 648 189025329 - TPASS_0095 - hypothetical protein 94 53.44 0 105906..106268 - 120 189025330 - TPASS_0096 - possible dnaK suppressor 95 54.79 0 106438..106656 + 72 189025331 infA TPASS_0097 - translation initiation factor 1 96 60.22 +1 106716..107366 - 216 189025332 - TPASS_0098 - possible heat-shock protein 97 55.56 0 107370..108125 - 251 189025333 smbA TPASS_0099 - uridylate kinase 98 54.89 0 108320..108922 + 200 189025334 - TPASS_0100 - possible thioredoxin 99 55.35 0 108915..109709 + 264 189025335 ccdA TPASS_0101 - cytochrome c biogenesis protein 100 45.09 -1 109747..111720 - 657 189025336 rep TPASS_0102 - Rep helicase, single-stranded DNA-dependent ATPase 101 52.74 0 111785..113608 + 607 189025337 - TPASS_0103 - possible ATP-dependent DNA helicase 102 48.43 -1 113855..115636 + 593 189025338 ushA TPASS_0104 - 5'-nucleotidase 103 44.76 -1 115803..118796 + 997 189025339 polA TPASS_0105 - DNA polymerase I 104 49.18 0 118828..120360 - 510 189025340 - TPASS_0106 - possible carnitine transporter 105 47.02 -1 120341..121918 - 525 189025341 licC TPASS_0107 - protein LicC 106 51.08 0 122272..123657 - 461 189025342 pfk TPASS_0108 - pyrophosphate--fructose 6-phosphate 1-phosphotransferase 107 55.29 0 123759..124637 - 292 189025343 - TPASS_0109 - possible rRNA methylase 108 49.60 0 125178..126911 + 577 189025344 - TPASS_0110 - hypothetical protein 109 47.90 -1 126971..128398 + 475 189025345 rpoN TPASS_0111 - RNA polymerase sigma-54 factor 110 46.86 -1 128395..129747 - 450 189025346 pepC TPASS_0112 - aminopeptidase C 111 46.61 -1 129889..130875 + 328 189025347 hflK TPASS_0113 - Lambda CII stability-governing protein 112 49.60 0 130880..131875 + 331 189025348 hflC TPASS_0114 - Lambda CII stability-governing protein 113 54.32 0 131900..132709 - 269 189025349 thiD TPASS_0115 - phosphomethypyrimidine kinase 114 45.34 -1 132860..134866 + 668 189025350 uvrB TPASS_0116 - excinuclease ABC, subunit B 115 56.09 0 134898..136694 - 598 189025351 tprC TPASS_0117 - protein TprC 116 55.61 0 136774..138039 - 421 189025352 - TPASS_0118 - hypothetical protein 117 55.15 0 138137..138796 - 219 189025353 yaeE TPASS_0119 - amino acid ABC transporter, permease protein 118 51.98 0 138796..139605 - 269 189025354 - TPASS_0120 - amino acid ABC transporter, ATP-binding protein 119 57.21 0 139735..140802 + 355 189025355 - TPASS_0121 - hypothetical protein 120 53.96 0 141022..142878 - 618 189025356 pckA TPASS_0122 - phosphoenolpyruvate carboxykinase 121 48.89 0 142984..145554 + 856 189025357 - TPASS_0123 - hypothetical protein 122 52.57 0 145568..146674 + 368 189025358 - TPASS_0124 - possible GTP-binding protein 123 56.60 0 146751..147545 + 264 189025359 exoA TPASS_0125 - exodeoxyribonuclease 124 59.13 +1 147609..148484 - 291 189025360 - TPASS_0126 - hypothetical protein 125 54.86 0 149847..150227 + 126 189025361 - TPASS_0127 - hypothetical protein 126 62.64 +2 150729..151076 + 115 189025362 - TPASS_0128 - hypothetical protein 127 59.54 +1 151061..151537 + 158 189025363 - TPASS_0129 - hypothetical protein 128 58.81 +1 151866..152285 - 139 189025364 - TPASS_0130 - hypothetical protein 129 56.09 0 152357..154153 - 598 189025365 tprD TPASS_0131 - protein TprD 130 65.38 +2 154331..154408 - 25 189025366 - TPASS_0132 - hypothetical protein 131 56.77 0 154393..155625 - 410 189025367 - TPASS_0133 - hypothetical protein 132 57.29 +1 155622..156752 - 376 189025368 - TPASS_0134 - hypothetical protein 133 59.02 +1 156704..157645 - 313 189025369 - TPASS_0135 - hypothetical protein 134 60.72 +1 157985..159463 + 492 189025370 - TPASS_0136 - hypothetical protein 135 53.62 0 159442..159579 + 45 189025371 - TPASS_0137 - hypothetical protein 136 49.05 0 159716..160453 - 245 189025372 - TPASS_0138 - hypothetical protein 137 48.05 -1 160461..161153 - 230 189025373 - TPASS_0139 - hypothetical protein 138 47.16 -1 161193..162920 - 575 189025374 ntpJ TPASS_0140 - K+ transport protein 139 55.99 0 163092..163625 + 177 189025375 dat TPASS_0141 - methylated-DNA-protein-cysteine S-methyltransferase 140 51.73 0 163576..164238 - 220 189025376 - TPASS_0142 - possible thiamine ABC transporter, ATP-binding protein 141 53.20 0 164231..166012 - 593 189025377 - TPASS_0143 - possible thiamine ABC transporter, permease protein 142 57.74 +1 165970..166977 - 335 189025378 - TPASS_0144 - possible thiamine ABC transporter, thiamine-binding periplasmic protein 143 53.83 0 167087..169057 + 656 189025379 - TPASS_0145 - long-chain-fatty-acid--CoA ligase 144 44.89 -1 170462..172321 - 619 189025380 - TPASS_0147 - possible alpha-amylase 1 145 51.30 0 172318..172896 - 192 189025381 - TPASS_0148 - hypothetical protein 146 50.17 0 172890..173483 - 197 189025382 - TPASS_0149 - hypothetical protein 147 49.15 0 173476..173943 - 155 189025383 - TPASS_0150 - hypothetical protein 148 54.51 0 173927..174946 - 339 189025384 - TPASS_0151 - hypothetical integral membrane protein 149 57.41 +1 174933..176477 - 514 189025385 rnfC TPASS_0152 - nitrogen fixation protein 150 54.88 0 176553..177044 - 163 189025386 - TPASS_0153 - hypothetical protein 151 58.57 +1 177269..178306 + 345 189025387 - TPASS_0154 - hypothetical protein 152 52.33 0 178312..179427 + 371 189025388 - TPASS_0155 - fibronectin binding protein 153 51.11 0 179468..179872 - 134 189025389 - TPASS_0156 - hypothetical protein 154 50.17 0 179869..180771 - 300 189025390 - TPASS_0157 - hypothetical protein 155 48.76 0 180768..181454 - 228 189025391 - TPASS_0158 - hypothetical protein 156 51.51 0 181458..182486 - 342 189025392 - TPASS_0159 - hypothetical protein 157 55.99 0 182602..184455 - 617 189025393 proS TPASS_0160 - prolyl-tRNA synthetase 158 55.91 0 184458..184550 - 30 189025394 - TPASS_0161 - hypothetical protein 159 58.59 +1 184567..185619 - 350 189025395 ruvB TPASS_0162 - Holliday junction DNA helicase, subunit B 160 53.51 0 185794..186720 + 308 189025396 troA TPASS_0163 - ABC transporter, periplasmic binding protein 161 53.43 0 186868..187668 + 266 189025397 troB TPASS_0164 - ABC transporter, ATP-binding protein 162 51.62 0 187640..188536 + 298 189025398 troC TPASS_0165 - ABC transporter, permease protein 163 52.26 0 188540..189643 + 367 189025399 troD TPASS_0166 - ABC transporter, permease protein 52.88 MEAN 4.36 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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