IslandPath Analysis: Treponema pallidum subsp. pallidum str. Nichols



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.88   STD DEV: 4.31
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011
1036 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
832	 57.90	+1	906186..907964	+	592	15639823	-	TP0837	-	threonyl-tRNA synthetase (thrS)
833	 46.55	-1	908013..909677	-	554	15639824	-	TP0838	-	ABC transporter, ATP-binding protein
834	 50.50	0	909752..910759	-	335	15639825	-	TP0839	-	hypothetical protein
835	 49.78	0	910864..913113	+	749	15639826	-	TP0840	-	hypothetical protein
836	 52.81	0	913175..914632	-	485	15639827	-	TP0841	-	periplasmic serine protease DO (htrA-2)
837	 55.08	0	914944..915711	-	255	15639828	-	TP0842	-	methionine aminopeptidase (map)
838	 54.67	0	915835..916659	-	274	15639829	-	TP0843	-	heat shock protein, putative
839	 54.89	0	916752..917804	+	350	15639830	-	TP0844	-	glyceraldehyde 3-phosphate dehydrogenase (gap)
840	 61.93	+2	917859..918449	-	196	15639831	-	TP0845	-	P23 protein, putative
841	 53.82	0	918430..918756	-	108	15639832	-	TP0846	-	hypothetical protein
842	 50.30	0	918756..919091	-	111	15639833	-	TP0847	-	hypothetical protein
843	 52.30	0	919085..919453	-	122	15639834	rplT	TP0848	-	50S ribosomal protein L20
844	 45.27	-1	919486..919686	-	66	15639835	rpmI	TP0849	-	50S ribosomal protein L35
845	 51.48	0	919739..920278	-	179	15639836	infC	TP0850	-	translation initiation factor IF-3
846	 47.03	-1	920441..922615	+	724	15639837	-	TP0851	-	hypothetical protein
847	 48.45	-1	922644..923642	-	332	15639838	-	TP0852	-	prolipoprotein diacylglyceryl transferase
848	 46.97	-1	923793..924929	-	378	15639839	-	TP0853	-	ATP-binding protein (ylxH-2)
849	 48.52	-1	924984..929585	-	1533	15639840	-	TP0854	-	hypothetical protein
850	 56.26	0	929582..932965	-	1127	15639841	-	TP0855	-	hypothetical protein
851	 58.49	+1	933121..934098	+	325	15639842	-	TP0856	-	hypothetical protein
852	 64.49	+2	934101..934421	-	106	15639843	-	TP0857	-	hypothetical protein
853	 57.95	+1	934406..935632	+	408	15639844	-	TP0858	-	hypothetical protein
854	 64.52	+2	935714..936412	+	232	15639845	-	TP0859	-	hypothetical protein
855	 59.20	+1	936477..937199	+	240	15639846	-	TP0860	-	hypothetical protein
856	 56.87	0	937274..939181	-	635	15639847	-	TP0861	-	glucosamine-fructose-6-phosphate aminotransferase (glmS)
857	 54.09	0	939418..940212	-	264	15639848	-	TP0862	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa (fklB)
858	 57.94	+1	940347..941630	+	427	15639849	-	TP0863	-	nitrogen fixation protein (nifS-2)
859	 55.58	0	941689..943329	-	546	15639850	-	TP0864	-	hypothetical protein
860	 54.51	0	943363..944802	-	479	15639851	-	TP0865	-	hypothetical protein
861	 56.99	0	946794..946979	-	61	15639852	-	TP0867	-	hypothetical protein
862	 54.47	0	947148..948008	+	286	15639853	-	TP0868	-	flagellar filament 34.5 kDa core protein (flaB1)
863	 55.27	0	948023..948259	+	78	15639854	-	TP0869	-	hypothetical protein
864	 53.50	0	948287..949144	+	285	15639855	-	TP0870	-	flagellar filament 31 kDa core protein (flaB3)
865	 46.30	-1	949205..949366	-	53	15639856	-	TP0871	-	hypothetical protein
866	 53.94	0	949442..951610	+	722	15639857	fliD	TP0872	-	flagellar hook-associated protein FliD
867	 46.60	-1	951622..952224	+	200	15639858	-	TP0873	-	hypothetical protein
868	 46.38	-1	952221..952496	+	91	15639859	-	TP0874	-	hypothetical protein
869	 56.86	0	952536..952943	+	135	15639860	-	TP0875	-	hypothetical protein
870	 52.40	0	952990..953655	+	221	15639861	-	TP0876	-	hypothetical protein
871	 43.35	-2	953660..954757	+	365	15639862	-	TP0877	-	hypothetical protein
872	 44.06	-2	954770..955720	-	316	15639863	-	TP0878	-	hypothetical protein
873	 43.45	-2	955726..957207	-	493	15639864	-	TP0879	-	hypothetical protein
874	 42.15	-2	957204..957929	-	241	15639865	-	TP0880	-	membrane spanning protein, putative
875	 46.84	-1	957919..958725	-	268	15639866	-	TP0881	-	ABC transporter, ATP-binding protein (natA)
876	 42.91	-2	958804..960306	-	500	15639867	-	TP0882	-	hypothetical protein
877	 37.89	-2	960272..961369	-	365	15639868	-	TP0883	-	hypothetical protein
878	 45.09	-1	961387..962475	-	362	15639869	-	TP0884	-	hypothetical protein
879	 56.24	0	962505..962945	-	146	15639870	-	TP0885	-	deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
880	 53.53	0	962942..965050	-	702	15639871	-	TP0886	-	polynucleotide phosphorylase/polyadenylase
881	 53.33	0	965198..965467	-	89	15639872	rpsO	TP0887	-	30S ribosomal protein S15
882	 60.51	+1	965483..966310	-	275	15639873	-	TP0888	-	riboflavin kinase/FMN adenylyltransferase (ribF)
883	 56.40	0	966314..967414	-	366	15639874	-	TP0889	-	tRNA pseudouridine 55 synthase (truB)
884	 49.08	0	967392..967772	-	126	15639875	-	TP0890	-	ribosome-binding factor A (rbfA)
885	 52.87	0	967769..970297	-	842	15639876	infB	TP0891	-	translation initiation factor IF-2
886	 49.66	0	970473..971930	-	485	15639877	nusA	TP0892	-	transcription elongation factor NusA
887	 58.17	+1	971980..972450	-	156	15639878	-	TP0893	-	hypothetical protein
888	 51.22	0	972625..973647	-	340	15639879	-	TP0894	-	hypothetical protein
889	 53.85	0	973654..974160	-	168	15639880	-	TP0895	-	hypothetical protein
890	 49.67	0	974182..974334	-	50	15639881	-	TP0896	-	hypothetical protein
891	 51.32	0	974316..975833	-	505	15639882	-	TP0897	-	TPR protein K (tprK)
892	 57.98	+1	975830..979549	-	1239	15639883	-	TP0898	-	ATP-dependent nuclease, subunit A, putative
893	 53.74	0	979546..980133	-	195	15639884	-	TP0899	-	hypothetical protein
894	 55.81	0	980112..982505	-	797	15639885	-	TP0900	-	hypothetical protein
895	 51.31	0	982544..983956	-	470	15639886	-	TP0901	-	hypothetical protein
896	 55.78	0	983997..984878	-	293	15639887	-	TP0902	-	carboxylesterase (est)
897	 57.72	+1	984880..986478	+	532	15639888	-	TP0903	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD)
898	 50.00	0	986471..986722	+	83	15639889	-	TP0904	-	hypothetical protein
899	 59.95	+1	986685..987056	+	123	15639890	-	TP0905	-	ribosomal protein S16 (rpsP)
900	 55.56	0	987065..987307	+	80	15639891	-	TP0906	-	hypothetical protein
901	 57.14	0	987370..987894	+	174	15639892	-	TP0907	-	hypothetical protein
902	 55.64	0	987891..988643	+	250	15639893	trmD	TP0908	-	tRNA (guanine-N(1)-)-methyltransferase
903	 52.15	0	988615..988986	+	123	15639894	rplS	TP0909	-	50S ribosomal protein L19
904	 57.11	0	988983..989903	+	306	15639895	-	TP0910	-	hypothetical protein
905	 48.41	-1	989925..990176	+	83	15639896	-	TP0911	-	hypothetical protein
906	 47.54	-1	990189..991511	+	440	15639897	-	TP0912	-	hypothetical protein
907	 48.82	0	991495..991875	+	126	15639898	-	TP0913	-	hypothetical protein
908	 47.80	-1	992047..992433	+	128	15639899	-	TP0914	-	hypothetical protein
909	 49.81	0	992507..993841	+	444	15639900	-	TP0915	-	hypothetical protein
910	 55.81	0	993898..994026	+	42	15639901	-	TP0916	-	hypothetical protein
911	 48.37	-1	994010..995359	+	449	15639902	-	TP0917	-	Mg2+ transport protein (mgtE)
912	 61.50	+1	995374..996147	+	257	15639903	-	TP0918	-	hypothetical protein
913	 49.06	0	996173..996490	-	105	15639904	-	TP0919	-	thioredoxin (trx)
914	 54.57	0	996713..999142	+	809	15639905	-	TP0920	-	hypothetical protein
915	 49.40	0	999250..1000587	+	445	15639906	-	TP0921	-	NADH oxidase
916	 65.21	+2	1000721..1001614	-	297	15639907	-	TP0922	-	hypothetical protein
917	 56.57	0	1001653..1002672	-	339	15639908	-	TP0923	-	hypothetical protein
918	 55.54	0	1002996..1005332	+	778	15639909	-	TP0924	-	tex protein (tex)
919	 53.06	0	1005699..1006139	+	146	15639910	-	TP0925	-	flavodoxin
920	 56.27	0	1006290..1007828	-	512	15639911	-	TP0926	-	signal peptidase I, putative
921	 52.79	0	1007920..1008510	+	196	15639912	-	TP0927	-	hypothetical protein
922	 59.38	+1	1008605..1009345	+	246	15639913	-	TP0928	-	hypothetical protein
923	 55.25	0	1009357..1010127	+	256	15639914	-	TP0929	-	hypothetical protein
924	 50.64	0	1010151..1011872	+	573	15639915	-	TP0930	-	hypothetical protein
925	 46.19	-1	1011956..1013386	-	476	15639916	-	TP0931	-	hypothetical protein
926	 53.76	0	1013396..1013488	-	30	15639917	-	TP0932	-	hypothetical protein
927	 51.32	0	1013498..1015120	-	540	15639918	-	TP0933	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE)
928	 49.18	0	1015256..1016479	+	407	15639919	-	TP0934	-	glutamate transporter, putative
929	 50.37	0	1016472..1017410	-	312	15639920	-	TP0935	-	N-acetylphosphinothricin-tripetide-deacetylase, putative
930	 52.23	0	1017604..1018677	-	357	15639921	-	TP0936	-	hemolysin, putative
931	 53.62	0	1018849..1019484	-	211	15639922	-	TP0937	-	hypothetical protein
52.88	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.