IslandPath Analysis: Treponema pallidum subsp. pallidum str. Nichols



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.88   STD DEV: 4.31
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011
1036 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
793	 56.69	0	863226..864017	-	263	15639784	-	TP0797	-	1-pyrroline-5-carboxylate reductase (proC)
794	 53.86	0	864068..866503	-	811	15639785	metG	TP0798	-	methionyl-tRNA synthetase
795	 46.41	-1	866536..866688	+	50	15639786	-	TP0799	-	hypothetical protein
796	 57.84	+1	866831..868303	+	490	15639787	-	TP0800	-	serine-type D-Ala-D-Ala carboxypeptidase (dacC)
797	 48.85	0	868364..870793	-	809	15639788	-	TP0801	-	ATP-dependent Clp protease subunit A (clpA)
798	 55.15	0	870839..871168	+	109	15639789	-	TP0802	-	hypothetical protein
799	 49.38	0	871182..872390	+	402	15639790	-	TP0803	-	hypothetical protein
800	 47.85	-1	872468..873631	+	387	15639791	-	TP0804	-	sugar ABC transporter, ATP-binding protein (ugpC)
801	 55.53	0	873482..875761	-	759	15639792	-	TP0805	-	exoribonuclease II (rnb)
802	 55.64	0	875758..877254	-	498	15639793	-	TP0806	-	femA protein, putative
803	 55.03	0	877383..877571	+	62	15639794	rpmF	TP0807	-	50S ribosomal protein L32
804	 48.10	-1	877632..877868	+	78	15639795	-	TP0808	-	acyl carrier protein (acpP)
805	 56.86	0	877865..878629	+	254	15639796	-	TP0809	-	ribonuclease III (rnc)
806	 55.04	0	878660..879571	+	303	15639797	-	TP0810	-	DNA adenine methyltransferase (dam)
807	 44.44	-1	879642..879767	-	41	15639798	-	TP0811	-	hypothetical protein
808	 55.01	0	881178..882464	-	428	15639799	-	TP0813	-	hypothetical protein
809	 53.14	0	882687..883610	+	307	15639800	-	TP0814	-	thioredoxin reductase (trxB)
810	 52.13	0	883732..884715	+	327	15639801	-	TP0815	-	hypothetical protein
811	 52.10	0	884787..885452	-	221	15639802	-	TP0816	-	hypothetical protein
812	 52.35	0	885590..886888	-	432	15639803	-	TP0817	-	enolase (eno)
813	 52.29	0	886885..887037	-	50	15639804	-	TP0818	-	hypothetical protein
814	 51.23	0	887064..887996	-	310	15639805	-	TP0819	-	ribonuclease Z
815	 55.77	0	888024..888794	-	256	15639806	-	TP0820	-	hypothetical protein
816	 53.90	0	888890..889696	-	268	15639807	-	TP0821	-	lipoprotein (tpn32)
817	 55.30	0	889777..890682	-	301	15639808	-	TP0822	-	hypothetical protein
818	 55.30	0	890770..891156	-	128	15639809	-	TP0823	-	desulfoferrodoxin (rbo)
819	 56.05	0	891553..893445	+	630	15639810	-	TP0824	-	1-deoxy-D-xylulose-5-phosphate synthase
820	 62.90	+2	893442..893627	+	61	15639811	-	TP0825	-	hypothetical protein
821	 51.09	0	893614..894435	+	273	15639812	-	TP0826	-	hypothetical protein
822	 53.44	0	894098..895375	+	425	15639813	-	TP0827	-	hypothetical protein
823	 49.21	0	895372..895749	+	125	15639814	-	TP0828	-	holo-acyl-carrier protein synthase (acpS)
824	 45.76	-1	895746..896630	+	294	15639815	-	TP0829	-	hypothetical protein
825	 50.89	0	896627..897469	+	280	15639816	truA	TP0830	-	tRNA pseudouridine synthase A
826	 50.17	0	897479..899248	-	589	15639817	argS	TP0831	-	arginyl-tRNA synthetase
827	 55.88	0	899271..900086	-	271	15639818	-	TP0832	-	hypothetical protein
828	 56.02	0	900153..900875	+	240	15639819	-	TP0833	-	hypothetical protein
829	 51.88	0	900932..902182	-	416	15639820	-	TP0834	-	tyrosyl-tRNA synthetase (tyrS)
830	 53.37	0	902269..905073	-	934	15639821	-	TP0835	-	ankyrin, putative
831	 53.09	0	905214..906038	-	274	15639822	-	TP0836	-	hypothetical protein
832	 57.90	+1	906186..907964	+	592	15639823	-	TP0837	-	threonyl-tRNA synthetase (thrS)
833	 46.55	-1	908013..909677	-	554	15639824	-	TP0838	-	ABC transporter, ATP-binding protein
834	 50.50	0	909752..910759	-	335	15639825	-	TP0839	-	hypothetical protein
835	 49.78	0	910864..913113	+	749	15639826	-	TP0840	-	hypothetical protein
836	 52.81	0	913175..914632	-	485	15639827	-	TP0841	-	periplasmic serine protease DO (htrA-2)
837	 55.08	0	914944..915711	-	255	15639828	-	TP0842	-	methionine aminopeptidase (map)
838	 54.67	0	915835..916659	-	274	15639829	-	TP0843	-	heat shock protein, putative
839	 54.89	0	916752..917804	+	350	15639830	-	TP0844	-	glyceraldehyde 3-phosphate dehydrogenase (gap)
840	 61.93	+2	917859..918449	-	196	15639831	-	TP0845	-	P23 protein, putative
841	 53.82	0	918430..918756	-	108	15639832	-	TP0846	-	hypothetical protein
842	 50.30	0	918756..919091	-	111	15639833	-	TP0847	-	hypothetical protein
843	 52.30	0	919085..919453	-	122	15639834	rplT	TP0848	-	50S ribosomal protein L20
844	 45.27	-1	919486..919686	-	66	15639835	rpmI	TP0849	-	50S ribosomal protein L35
845	 51.48	0	919739..920278	-	179	15639836	infC	TP0850	-	translation initiation factor IF-3
846	 47.03	-1	920441..922615	+	724	15639837	-	TP0851	-	hypothetical protein
847	 48.45	-1	922644..923642	-	332	15639838	-	TP0852	-	prolipoprotein diacylglyceryl transferase
848	 46.97	-1	923793..924929	-	378	15639839	-	TP0853	-	ATP-binding protein (ylxH-2)
849	 48.52	-1	924984..929585	-	1533	15639840	-	TP0854	-	hypothetical protein
850	 56.26	0	929582..932965	-	1127	15639841	-	TP0855	-	hypothetical protein
851	 58.49	+1	933121..934098	+	325	15639842	-	TP0856	-	hypothetical protein
852	 64.49	+2	934101..934421	-	106	15639843	-	TP0857	-	hypothetical protein
853	 57.95	+1	934406..935632	+	408	15639844	-	TP0858	-	hypothetical protein
854	 64.52	+2	935714..936412	+	232	15639845	-	TP0859	-	hypothetical protein
855	 59.20	+1	936477..937199	+	240	15639846	-	TP0860	-	hypothetical protein
856	 56.87	0	937274..939181	-	635	15639847	-	TP0861	-	glucosamine-fructose-6-phosphate aminotransferase (glmS)
857	 54.09	0	939418..940212	-	264	15639848	-	TP0862	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa (fklB)
858	 57.94	+1	940347..941630	+	427	15639849	-	TP0863	-	nitrogen fixation protein (nifS-2)
859	 55.58	0	941689..943329	-	546	15639850	-	TP0864	-	hypothetical protein
860	 54.51	0	943363..944802	-	479	15639851	-	TP0865	-	hypothetical protein
861	 56.99	0	946794..946979	-	61	15639852	-	TP0867	-	hypothetical protein
862	 54.47	0	947148..948008	+	286	15639853	-	TP0868	-	flagellar filament 34.5 kDa core protein (flaB1)
863	 55.27	0	948023..948259	+	78	15639854	-	TP0869	-	hypothetical protein
864	 53.50	0	948287..949144	+	285	15639855	-	TP0870	-	flagellar filament 31 kDa core protein (flaB3)
865	 46.30	-1	949205..949366	-	53	15639856	-	TP0871	-	hypothetical protein
866	 53.94	0	949442..951610	+	722	15639857	fliD	TP0872	-	flagellar hook-associated protein FliD
867	 46.60	-1	951622..952224	+	200	15639858	-	TP0873	-	hypothetical protein
868	 46.38	-1	952221..952496	+	91	15639859	-	TP0874	-	hypothetical protein
869	 56.86	0	952536..952943	+	135	15639860	-	TP0875	-	hypothetical protein
870	 52.40	0	952990..953655	+	221	15639861	-	TP0876	-	hypothetical protein
871	 43.35	-2	953660..954757	+	365	15639862	-	TP0877	-	hypothetical protein
872	 44.06	-2	954770..955720	-	316	15639863	-	TP0878	-	hypothetical protein
873	 43.45	-2	955726..957207	-	493	15639864	-	TP0879	-	hypothetical protein
874	 42.15	-2	957204..957929	-	241	15639865	-	TP0880	-	membrane spanning protein, putative
875	 46.84	-1	957919..958725	-	268	15639866	-	TP0881	-	ABC transporter, ATP-binding protein (natA)
876	 42.91	-2	958804..960306	-	500	15639867	-	TP0882	-	hypothetical protein
877	 37.89	-2	960272..961369	-	365	15639868	-	TP0883	-	hypothetical protein
878	 45.09	-1	961387..962475	-	362	15639869	-	TP0884	-	hypothetical protein
879	 56.24	0	962505..962945	-	146	15639870	-	TP0885	-	deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
880	 53.53	0	962942..965050	-	702	15639871	-	TP0886	-	polynucleotide phosphorylase/polyadenylase
881	 53.33	0	965198..965467	-	89	15639872	rpsO	TP0887	-	30S ribosomal protein S15
882	 60.51	+1	965483..966310	-	275	15639873	-	TP0888	-	riboflavin kinase/FMN adenylyltransferase (ribF)
883	 56.40	0	966314..967414	-	366	15639874	-	TP0889	-	tRNA pseudouridine 55 synthase (truB)
884	 49.08	0	967392..967772	-	126	15639875	-	TP0890	-	ribosome-binding factor A (rbfA)
885	 52.87	0	967769..970297	-	842	15639876	infB	TP0891	-	translation initiation factor IF-2
886	 49.66	0	970473..971930	-	485	15639877	nusA	TP0892	-	transcription elongation factor NusA
887	 58.17	+1	971980..972450	-	156	15639878	-	TP0893	-	hypothetical protein
888	 51.22	0	972625..973647	-	340	15639879	-	TP0894	-	hypothetical protein
889	 53.85	0	973654..974160	-	168	15639880	-	TP0895	-	hypothetical protein
890	 49.67	0	974182..974334	-	50	15639881	-	TP0896	-	hypothetical protein
891	 51.32	0	974316..975833	-	505	15639882	-	TP0897	-	TPR protein K (tprK)
892	 57.98	+1	975830..979549	-	1239	15639883	-	TP0898	-	ATP-dependent nuclease, subunit A, putative
52.88	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.