IslandPath Analysis: Treponema pallidum subsp. pallidum str. Nichols



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.88   STD DEV: 4.31
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011
1036 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
750	 48.80	0	818176..819546	-	456	15639741	-	TP0754	-	hypothetical protein
751	 48.43	-1	819588..820130	-	180	15639742	-	TP0755	-	PTS system, nitrogen regulatory IIA component (ptsN-2)
752	 55.31	0	820330..821289	-	319	15639743	-	TP0756	-	methionyl-tRNA formyltransferase (fmt)
753	 55.42	0	821293..821781	-	162	15639744	-	TP0757	-	polypeptide deformylase (def)
754	 48.57	-1	821822..822031	-	69	15639745	rpsU	TP0758	-	30S ribosomal protein S21
755	 54.17	0	822150..822269	+	39	15639746	-	TP0759	-	hypothetical protein
756	 54.26	0	822226..824184	+	652	15639747	-	TP0760	-	penicillin-binding protein (pbp-3)
757	 53.81	0	824165..825043	+	292	15639748	-	TP0761	-	hypothetical protein
758	 57.70	+1	825072..826253	+	393	15639749	-	TP0762	-	hypothetical protein
759	 53.93	0	826315..827256	-	313	15639750	-	TP0763	-	hypothetical protein
760	 53.74	0	827215..828390	+	391	15639751	-	TP0764	-	hypothetical protein
761	 52.95	0	828372..830201	-	609	15639752	-	TP0765	-	cell division protein (ftsH)
762	 57.60	+1	830604..831485	+	293	15639753	-	TP0766	-	hypothetical protein
763	 52.97	0	831696..833783	+	695	15639754	-	TP0767	-	elongation factor G
764	 56.07	0	833922..834959	+	345	15639755	-	TP0768	-	membrane protein (tmpA)
765	 55.83	0	834956..835933	+	325	15639756	-	TP0769	-	outer membrane protein (tmpB)
766	 53.49	0	835978..837927	+	649	15639757	-	TP0770	-	ATP-dependent RNA helicase
767	 46.30	-1	837948..839729	-	593	15639758	-	TP0771	-	hypothetical protein
768	 50.67	0	839733..840557	+	274	15639759	-	TP0772	-	hypothetical protein
769	 55.72	0	840597..841793	-	398	15639760	-	TP0773	-	periplasmic serine protease DO (htrA-1)
770	 50.67	0	842138..842812	+	224	15639761	-	TP0774	-	Mg2+ transport protein (mgtC)
771	 55.19	0	842892..843527	+	211	15639762	-	TP0775	-	endonuclease III (nth)
772	 57.27	+1	843604..844380	-	258	15639763	-	TP0776	-	hypothetical protein
773	 49.78	0	844433..844657	-	74	15639764	-	TP0777	-	hypothetical protein
774	 53.95	0	844726..845637	-	303	15639765	-	TP0778	-	mazG protein (mazG)
775	 50.39	0	845634..846278	-	214	15639766	-	TP0779	-	dedA protein (dedA)
776	 55.39	0	846325..848364	-	679	15639767	nadE	TP0780	-	NAD synthetase
777	 54.33	0	848401..848862	-	153	15639768	-	TP0781	-	hypothetical protein
778	 51.58	0	848908..849351	-	147	15639769	-	TP0782	-	hypothetical protein
779	 51.76	0	849380..850513	-	377	15639770	-	TP0783	-	hypothetical protein
780	 54.83	0	850679..851278	+	199	15639771	-	TP0784	-	hypothetical protein
781	 49.78	0	851275..851961	+	228	15639772	-	TP0785	-	hypothetical protein
782	 52.24	0	852093..852806	+	237	15639773	-	TP0786	-	ABC transporter, ATP-binding protein, putative
783	 51.43	0	852853..853272	-	139	15639774	-	TP0787	-	hypothetical protein
784	 58.14	+1	853354..854244	+	296	15639775	-	TP0788	-	hypothetical protein
785	 50.97	0	854257..855033	-	258	15639776	-	TP0789	-	hypothetical protein
786	 50.28	0	855052..857718	-	888	15639777	-	TP0790	-	antibiotic transport protein, putative
787	 54.07	0	857861..858106	-	81	15639778	-	TP0791	-	hypothetical protein
788	 52.96	0	858092..858952	+	286	15639779	-	TP0792	-	flagellar filament 33 kDa core protein (flaB2)
789	 49.38	0	859031..860650	+	539	15639780	-	TP0793	-	hypothetical protein
790	 53.23	0	860687..861877	-	396	15639781	-	TP0794	-	S-adenosylmethionine synthetase
791	 55.35	0	861931..862089	+	52	15639782	-	TP0795	-	hypothetical protein
792	 56.11	0	862078..863166	-	362	15639783	-	TP0796	-	hypothetical protein
793	 56.69	0	863226..864017	-	263	15639784	-	TP0797	-	1-pyrroline-5-carboxylate reductase (proC)
794	 53.86	0	864068..866503	-	811	15639785	metG	TP0798	-	methionyl-tRNA synthetase
795	 46.41	-1	866536..866688	+	50	15639786	-	TP0799	-	hypothetical protein
796	 57.84	+1	866831..868303	+	490	15639787	-	TP0800	-	serine-type D-Ala-D-Ala carboxypeptidase (dacC)
797	 48.85	0	868364..870793	-	809	15639788	-	TP0801	-	ATP-dependent Clp protease subunit A (clpA)
798	 55.15	0	870839..871168	+	109	15639789	-	TP0802	-	hypothetical protein
799	 49.38	0	871182..872390	+	402	15639790	-	TP0803	-	hypothetical protein
800	 47.85	-1	872468..873631	+	387	15639791	-	TP0804	-	sugar ABC transporter, ATP-binding protein (ugpC)
801	 55.53	0	873482..875761	-	759	15639792	-	TP0805	-	exoribonuclease II (rnb)
802	 55.64	0	875758..877254	-	498	15639793	-	TP0806	-	femA protein, putative
803	 55.03	0	877383..877571	+	62	15639794	rpmF	TP0807	-	50S ribosomal protein L32
804	 48.10	-1	877632..877868	+	78	15639795	-	TP0808	-	acyl carrier protein (acpP)
805	 56.86	0	877865..878629	+	254	15639796	-	TP0809	-	ribonuclease III (rnc)
806	 55.04	0	878660..879571	+	303	15639797	-	TP0810	-	DNA adenine methyltransferase (dam)
807	 44.44	-1	879642..879767	-	41	15639798	-	TP0811	-	hypothetical protein
808	 55.01	0	881178..882464	-	428	15639799	-	TP0813	-	hypothetical protein
809	 53.14	0	882687..883610	+	307	15639800	-	TP0814	-	thioredoxin reductase (trxB)
810	 52.13	0	883732..884715	+	327	15639801	-	TP0815	-	hypothetical protein
811	 52.10	0	884787..885452	-	221	15639802	-	TP0816	-	hypothetical protein
812	 52.35	0	885590..886888	-	432	15639803	-	TP0817	-	enolase (eno)
813	 52.29	0	886885..887037	-	50	15639804	-	TP0818	-	hypothetical protein
814	 51.23	0	887064..887996	-	310	15639805	-	TP0819	-	ribonuclease Z
815	 55.77	0	888024..888794	-	256	15639806	-	TP0820	-	hypothetical protein
816	 53.90	0	888890..889696	-	268	15639807	-	TP0821	-	lipoprotein (tpn32)
817	 55.30	0	889777..890682	-	301	15639808	-	TP0822	-	hypothetical protein
818	 55.30	0	890770..891156	-	128	15639809	-	TP0823	-	desulfoferrodoxin (rbo)
819	 56.05	0	891553..893445	+	630	15639810	-	TP0824	-	1-deoxy-D-xylulose-5-phosphate synthase
820	 62.90	+2	893442..893627	+	61	15639811	-	TP0825	-	hypothetical protein
821	 51.09	0	893614..894435	+	273	15639812	-	TP0826	-	hypothetical protein
822	 53.44	0	894098..895375	+	425	15639813	-	TP0827	-	hypothetical protein
823	 49.21	0	895372..895749	+	125	15639814	-	TP0828	-	holo-acyl-carrier protein synthase (acpS)
824	 45.76	-1	895746..896630	+	294	15639815	-	TP0829	-	hypothetical protein
825	 50.89	0	896627..897469	+	280	15639816	truA	TP0830	-	tRNA pseudouridine synthase A
826	 50.17	0	897479..899248	-	589	15639817	argS	TP0831	-	arginyl-tRNA synthetase
827	 55.88	0	899271..900086	-	271	15639818	-	TP0832	-	hypothetical protein
828	 56.02	0	900153..900875	+	240	15639819	-	TP0833	-	hypothetical protein
829	 51.88	0	900932..902182	-	416	15639820	-	TP0834	-	tyrosyl-tRNA synthetase (tyrS)
830	 53.37	0	902269..905073	-	934	15639821	-	TP0835	-	ankyrin, putative
831	 53.09	0	905214..906038	-	274	15639822	-	TP0836	-	hypothetical protein
832	 57.90	+1	906186..907964	+	592	15639823	-	TP0837	-	threonyl-tRNA synthetase (thrS)
833	 46.55	-1	908013..909677	-	554	15639824	-	TP0838	-	ABC transporter, ATP-binding protein
834	 50.50	0	909752..910759	-	335	15639825	-	TP0839	-	hypothetical protein
835	 49.78	0	910864..913113	+	749	15639826	-	TP0840	-	hypothetical protein
836	 52.81	0	913175..914632	-	485	15639827	-	TP0841	-	periplasmic serine protease DO (htrA-2)
837	 55.08	0	914944..915711	-	255	15639828	-	TP0842	-	methionine aminopeptidase (map)
838	 54.67	0	915835..916659	-	274	15639829	-	TP0843	-	heat shock protein, putative
839	 54.89	0	916752..917804	+	350	15639830	-	TP0844	-	glyceraldehyde 3-phosphate dehydrogenase (gap)
840	 61.93	+2	917859..918449	-	196	15639831	-	TP0845	-	P23 protein, putative
841	 53.82	0	918430..918756	-	108	15639832	-	TP0846	-	hypothetical protein
842	 50.30	0	918756..919091	-	111	15639833	-	TP0847	-	hypothetical protein
843	 52.30	0	919085..919453	-	122	15639834	rplT	TP0848	-	50S ribosomal protein L20
844	 45.27	-1	919486..919686	-	66	15639835	rpmI	TP0849	-	50S ribosomal protein L35
845	 51.48	0	919739..920278	-	179	15639836	infC	TP0850	-	translation initiation factor IF-3
846	 47.03	-1	920441..922615	+	724	15639837	-	TP0851	-	hypothetical protein
847	 48.45	-1	922644..923642	-	332	15639838	-	TP0852	-	prolipoprotein diacylglyceryl transferase
848	 46.97	-1	923793..924929	-	378	15639839	-	TP0853	-	ATP-binding protein (ylxH-2)
849	 48.52	-1	924984..929585	-	1533	15639840	-	TP0854	-	hypothetical protein
52.88	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.