IslandPath Analysis: Treponema pallidum subsp. pallidum str. Nichols



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.88   STD DEV: 4.31
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011
1036 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
708	 44.15	-2	779279..780193	-	304	15639699	-	TP0712	-	ATP-binding protein (ylxH-1)
709	 42.85	-2	780165..781478	-	437	15639700	-	TP0713	-	flagellar-associated GTP-binding protein (flhF)
710	 42.98	-2	781513..783636	-	707	15639701	flhA	TP0714	-	flagellar biosynthesis protein FlhA
711	 41.56	-2	783645..784775	-	376	15639702	flhB	TP0715	-	flagellar biosynthesis protein FlhB
712	 43.73	-2	784772..785569	-	265	15639703	-	TP0716	-	flagellar biosynthetic protein (fliR)
713	 47.72	-1	785582..785866	-	94	15639704	-	TP0717	-	flagellar biosynthetic protein (fliQ)
714	 48.53	-1	785885..786700	-	271	15639705	fliP	TP0718	-	flagellar biosynthesis protein FliP
715	 55.77	0	786697..787485	-	262	15639706	-	TP0719	-	hypothetical protein
716	 52.53	0	787421..788467	-	348	15639707	-	TP0720	-	flagellar motor switch protein (fliY)
717	 51.30	0	788460..789494	-	344	15639708	fliM	TP0721	-	flagellar motor switch protein FliM
718	 50.46	0	789516..790064	-	182	15639709	fliL	TP0722	-	flagellar basal body-associated protein FliL
719	 55.56	0	790043..790177	-	44	15639710	-	TP0723	-	hypothetical protein
720	 51.88	0	790174..790890	-	238	15639711	motB	TP0724	-	flagellar motor protein MotB
721	 51.28	0	790896..791675	-	259	15639712	-	TP0725	-	flagellar motor rotation protein (motA)
722	 45.45	-1	791691..791888	-	65	15639713	-	TP0726	-	flagellar protein (flbD)
723	 50.65	0	791946..793337	-	463	15639714	flgE	TP0727	-	flagellar hook protein FlgE
724	 53.90	0	793408..793869	-	153	15639715	flgD	TP0728	-	flagellar basal body rod modification protein
725	 62.65	+2	793945..795588	-	547	15639716	-	TP0729	-	hypothetical protein
726	 55.37	0	795557..796654	+	365	15639717	-	TP0730	-	hypothetical protein
727	 58.93	+1	796674..797384	+	236	15639718	-	TP0731	-	hypothetical protein
728	 62.03	+2	797349..798296	-	315	15639719	-	TP0732	-	methylenetetrahydrofolate dehydrogenase (folD)
729	 59.24	+1	798392..799051	+	219	15639720	-	TP0733	-	hypothetical protein
730	 57.41	+1	799084..799785	-	233	15639721	-	TP0734	-	purine nucleoside phosphorylase (deoD)
731	 55.11	0	799867..801423	-	518	15639722	-	TP0735	-	putative oxidoreductase
732	 51.72	0	801426..802268	-	280	15639723	-	TP0736	-	ferredoxin--NADP(+) reductase subunit alpha
733	 52.17	0	802502..803812	+	436	15639724	-	TP0737	-	sugar ABC transporter, periplasmic binding protein (msmE)
734	 58.93	+1	803858..804193	-	111	15639725	-	TP0738	-	hypothetical protein
735	 45.86	-1	804190..805386	-	398	15639726	-	TP0739	-	hypothetical protein
736	 55.38	0	805460..806026	-	188	15639727	-	TP0740	-	hypothetical protein
737	 55.28	0	806154..806768	-	204	15639728	-	TP0741	-	hypothetical protein
738	 57.74	+1	806765..807895	-	376	15639729	obgE	TP0742	-	GTPase ObgE
739	 54.17	0	808013..808276	-	87	15639730	rpmA	TP0743	-	50S ribosomal protein L27
740	 56.88	0	808307..808633	-	108	15639731	-	TP0744	-	hypothetical protein
741	 51.89	0	808646..808963	-	105	15639732	rplU	TP0745	-	50S ribosomal protein L21
742	 51.03	0	809070..811775	-	901	15639733	-	TP0746	-	pyruvate phosphate dikinase
743	 50.14	0	811785..812819	-	344	15639734	-	TP0747	-	hypothetical protein
744	 48.31	-1	812908..814944	-	678	15639735	-	TP0748	-	cytoplasmic filament protein A (cfpA)
745	 37.84	-2	814922..815143	-	73	15639736	-	TP0749	-	hypothetical protein
746	 52.23	0	815113..815784	+	223	15639737	-	TP0750	-	hypothetical protein
747	 56.58	0	815821..816534	+	237	15639738	-	TP0751	-	hypothetical protein
748	 54.59	0	816672..817814	-	380	15639739	-	TP0752	-	hypothetical protein
749	 47.72	-1	817895..818179	-	94	15639740	-	TP0753	-	hypothetical protein
750	 48.80	0	818176..819546	-	456	15639741	-	TP0754	-	hypothetical protein
751	 48.43	-1	819588..820130	-	180	15639742	-	TP0755	-	PTS system, nitrogen regulatory IIA component (ptsN-2)
752	 55.31	0	820330..821289	-	319	15639743	-	TP0756	-	methionyl-tRNA formyltransferase (fmt)
753	 55.42	0	821293..821781	-	162	15639744	-	TP0757	-	polypeptide deformylase (def)
754	 48.57	-1	821822..822031	-	69	15639745	rpsU	TP0758	-	30S ribosomal protein S21
755	 54.17	0	822150..822269	+	39	15639746	-	TP0759	-	hypothetical protein
756	 54.26	0	822226..824184	+	652	15639747	-	TP0760	-	penicillin-binding protein (pbp-3)
757	 53.81	0	824165..825043	+	292	15639748	-	TP0761	-	hypothetical protein
758	 57.70	+1	825072..826253	+	393	15639749	-	TP0762	-	hypothetical protein
759	 53.93	0	826315..827256	-	313	15639750	-	TP0763	-	hypothetical protein
760	 53.74	0	827215..828390	+	391	15639751	-	TP0764	-	hypothetical protein
761	 52.95	0	828372..830201	-	609	15639752	-	TP0765	-	cell division protein (ftsH)
762	 57.60	+1	830604..831485	+	293	15639753	-	TP0766	-	hypothetical protein
763	 52.97	0	831696..833783	+	695	15639754	-	TP0767	-	elongation factor G
764	 56.07	0	833922..834959	+	345	15639755	-	TP0768	-	membrane protein (tmpA)
765	 55.83	0	834956..835933	+	325	15639756	-	TP0769	-	outer membrane protein (tmpB)
766	 53.49	0	835978..837927	+	649	15639757	-	TP0770	-	ATP-dependent RNA helicase
767	 46.30	-1	837948..839729	-	593	15639758	-	TP0771	-	hypothetical protein
768	 50.67	0	839733..840557	+	274	15639759	-	TP0772	-	hypothetical protein
769	 55.72	0	840597..841793	-	398	15639760	-	TP0773	-	periplasmic serine protease DO (htrA-1)
770	 50.67	0	842138..842812	+	224	15639761	-	TP0774	-	Mg2+ transport protein (mgtC)
771	 55.19	0	842892..843527	+	211	15639762	-	TP0775	-	endonuclease III (nth)
772	 57.27	+1	843604..844380	-	258	15639763	-	TP0776	-	hypothetical protein
773	 49.78	0	844433..844657	-	74	15639764	-	TP0777	-	hypothetical protein
774	 53.95	0	844726..845637	-	303	15639765	-	TP0778	-	mazG protein (mazG)
775	 50.39	0	845634..846278	-	214	15639766	-	TP0779	-	dedA protein (dedA)
776	 55.39	0	846325..848364	-	679	15639767	nadE	TP0780	-	NAD synthetase
777	 54.33	0	848401..848862	-	153	15639768	-	TP0781	-	hypothetical protein
778	 51.58	0	848908..849351	-	147	15639769	-	TP0782	-	hypothetical protein
779	 51.76	0	849380..850513	-	377	15639770	-	TP0783	-	hypothetical protein
780	 54.83	0	850679..851278	+	199	15639771	-	TP0784	-	hypothetical protein
781	 49.78	0	851275..851961	+	228	15639772	-	TP0785	-	hypothetical protein
782	 52.24	0	852093..852806	+	237	15639773	-	TP0786	-	ABC transporter, ATP-binding protein, putative
783	 51.43	0	852853..853272	-	139	15639774	-	TP0787	-	hypothetical protein
784	 58.14	+1	853354..854244	+	296	15639775	-	TP0788	-	hypothetical protein
785	 50.97	0	854257..855033	-	258	15639776	-	TP0789	-	hypothetical protein
786	 50.28	0	855052..857718	-	888	15639777	-	TP0790	-	antibiotic transport protein, putative
787	 54.07	0	857861..858106	-	81	15639778	-	TP0791	-	hypothetical protein
788	 52.96	0	858092..858952	+	286	15639779	-	TP0792	-	flagellar filament 33 kDa core protein (flaB2)
789	 49.38	0	859031..860650	+	539	15639780	-	TP0793	-	hypothetical protein
790	 53.23	0	860687..861877	-	396	15639781	-	TP0794	-	S-adenosylmethionine synthetase
791	 55.35	0	861931..862089	+	52	15639782	-	TP0795	-	hypothetical protein
792	 56.11	0	862078..863166	-	362	15639783	-	TP0796	-	hypothetical protein
793	 56.69	0	863226..864017	-	263	15639784	-	TP0797	-	1-pyrroline-5-carboxylate reductase (proC)
794	 53.86	0	864068..866503	-	811	15639785	metG	TP0798	-	methionyl-tRNA synthetase
795	 46.41	-1	866536..866688	+	50	15639786	-	TP0799	-	hypothetical protein
796	 57.84	+1	866831..868303	+	490	15639787	-	TP0800	-	serine-type D-Ala-D-Ala carboxypeptidase (dacC)
797	 48.85	0	868364..870793	-	809	15639788	-	TP0801	-	ATP-dependent Clp protease subunit A (clpA)
798	 55.15	0	870839..871168	+	109	15639789	-	TP0802	-	hypothetical protein
799	 49.38	0	871182..872390	+	402	15639790	-	TP0803	-	hypothetical protein
800	 47.85	-1	872468..873631	+	387	15639791	-	TP0804	-	sugar ABC transporter, ATP-binding protein (ugpC)
801	 55.53	0	873482..875761	-	759	15639792	-	TP0805	-	exoribonuclease II (rnb)
802	 55.64	0	875758..877254	-	498	15639793	-	TP0806	-	femA protein, putative
803	 55.03	0	877383..877571	+	62	15639794	rpmF	TP0807	-	50S ribosomal protein L32
804	 48.10	-1	877632..877868	+	78	15639795	-	TP0808	-	acyl carrier protein (acpP)
805	 56.86	0	877865..878629	+	254	15639796	-	TP0809	-	ribonuclease III (rnc)
806	 55.04	0	878660..879571	+	303	15639797	-	TP0810	-	DNA adenine methyltransferase (dam)
807	 44.44	-1	879642..879767	-	41	15639798	-	TP0811	-	hypothetical protein
52.88	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.