version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 23 45.15 -1 29068..29778 + 236 15639018 - TP0024 - hypothetical protein 24 50.39 0 29857..32928 - 1023 15639019 - TP0025 - hypothetical protein 25 52.20 0 32957..33979 - 340 15639020 - TP0026 - flagellar motor switch protein (fliG-1) 26 51.39 0 34205..35428 + 407 15639021 - TP0027 - hemolysin, putative 27 49.05 0 35442..36803 + 453 15639022 - TP0028 - hemolysin, putative 28 50.08 0 36911..38188 + 425 15639023 - TP0029 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 29 50.15 0 38307..39941 + 544 15639024 groEL TP0030 - chaperonin GroEL 30 56.27 0 40005..40283 + 92 15639025 - TP0031 - hypothetical protein 31 51.06 0 40280..41080 - 266 15639026 - TP0032 - hypothetical protein 32 43.63 -2 41077..41688 - 203 15639027 - TP0033 - hypothetical protein 33 48.58 0 41789..42739 - 316 15639028 - TP0034 - ABC transporter, periplasmic binding protein 34 47.84 -1 42937..43653 + 238 15639029 - TP0035 - ABC transporter, ATP-binding protein 35 52.18 0 43653..44453 + 266 15639030 - TP0036 - ABC transporter, permease protein 36 51.51 0 44562..45557 - 331 15639031 - TP0037 - D-specific D-2-hydroxyacid dehydrogenase 37 54.23 0 45654..46706 - 350 15639032 - TP0038 - regulatory protein (pfoS/R) 38 49.06 0 46755..46913 + 52 15639033 - TP0039 - hypothetical protein 39 54.29 0 47591..49384 + 597 15639034 - TP0040 - methyl-accepting chemotaxis protein (mcp1) 40 61.79 +2 49386..49508 + 40 15639035 - TP0041 - hypothetical protein 41 55.41 0 49505..50437 + 310 15639036 - TP0042 - hypothetical protein 42 51.62 0 50418..52550 + 710 15639037 - TP0043 - soluble lytic transglycosylase, putative 43 49.34 0 52590..54482 + 630 15639038 - TP0044 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 44 43.33 -2 54538..55437 - 299 15639039 - TP0045 - adenosine deaminase 45 49.00 0 55799..56500 - 233 15639040 - TP0046 - hypothetical protein 46 46.74 -1 56518..57039 - 173 15639041 - TP0047 - hypothetical protein 47 51.85 0 57045..57476 - 143 15639042 - TP0048 - hypothetical protein 48 53.84 0 57498..58526 - 342 15639043 - TP0049 - hypothetical protein 49 53.37 0 58819..59427 - 202 15639044 - TP0050 - hypothetical protein 50 49.72 0 59578..60633 + 351 15639045 prfA TP0051 - peptide chain release factor 1 51 55.21 0 60603..61649 + 348 15639046 - TP0052 - protoporphyrinogen oxidase (hemK) 52 45.08 -1 61738..62793 - 351 15639047 nrdF TP0053 - ribonucleotide-diphosphate reductase subunit beta 53 53.12 0 62964..63923 + 319 15639048 - TP0054 - hypothetical protein 54 57.81 +1 64130..64366 + 78 15639049 - TP0055 - hypothetical protein 55 54.04 0 64363..66144 + 593 15639050 - TP0056 - pyruvate carboxylase subunit B 56 52.48 0 66156..67565 + 469 15639051 - TP0057 - oxaloacetate decarboxylase, subunit beta (oadB) 57 53.00 0 67640..68956 - 438 15639052 - TP0058 - replicative DNA helicase (dnaB) 58 53.95 0 68940..69167 - 75 15639053 - TP0059 - hypothetical protein 59 47.98 -1 69173..69643 - 156 15639054 rplI TP0060 - 50S ribosomal protein L9 60 51.33 0 69749..70048 - 99 15639055 rpsR TP0061 - 30S ribosomal protein S18 61 53.86 0 70165..70695 - 176 15639056 - TP0062 - single-strand DNA binding protein (ssb) 62 53.55 0 70704..70985 - 93 15639057 rpsF TP0063 - 30S ribosomal protein S6 63 49.65 0 71127..71702 + 191 15639058 - TP0064 - hypothetical protein 64 49.83 0 71776..72363 + 195 15639059 - TP0065 - hypothetical protein 65 52.06 0 72347..72661 + 104 15639060 - TP0066 - hypothetical protein 66 50.34 0 72649..73830 + 393 15639061 - TP0067 - hypothetical protein 67 53.18 0 74011..75033 + 340 15639062 - TP0068 - hypothetical protein 68 52.54 0 75089..75619 - 176 15639063 - TP0069 - hypothetical protein 69 52.97 0 75469..75855 - 128 15639064 - TP0070 - hypothetical protein 70 49.87 0 75906..78542 - 878 15639065 - TP0071 - ATP-dependent Clp protease subunit B (clpB) 71 48.72 0 78746..79018 + 90 15639066 - TP0072 - hypothetical protein 72 52.46 0 79088..80629 - 513 15639067 - TP0073 - hypothetical protein 73 55.11 0 80934..82343 + 469 15639068 - TP0074 - sugar ABC transporter, periplasmic binding protein (y4oP) 74 49.38 0 82462..83352 + 296 15639069 - TP0075 - sugar ABC transporter, permease protein (y4oQ) 75 48.42 -1 83392..84213 + 273 15639070 - TP0076 - sugar ABC transporter, permease protein (y4oR) 76 50.28 0 84254..85870 + 538 15639071 - TP0077 - capsular polysaccharide biosynthesis protein (cap5D) 77 50.04 0 85875..87113 + 412 15639072 - TP0078 - spore coat polysaccharide biosynthesis protein (spsC) 78 50.11 0 87041..89263 + 740 15639073 - TP0079 - hypothetical protein 79 42.95 -2 89260..89727 + 155 15639074 - TP0080 - quinoline 2-oxidoreductase 80 46.64 -1 89734..90582 + 282 15639075 - TP0081 - hypothetical protein 81 52.69 0 90629..92431 - 600 15639076 - TP0082 - formate hydrogenlyase transcriptional activator (fhlA) 82 54.25 0 93177..94457 + 426 15639077 - TP0083 - hypothetical protein 83 53.42 0 94437..94670 - 77 15639078 - TP0084 - hypothetical protein 84 49.89 0 94784..95230 - 148 15639079 - TP0085 - PTS system, nitrogen regulatory IIA component (ptsN-1) 85 53.65 0 95311..96255 + 314 15639080 - TP0086 - hypothetical protein 86 57.41 +1 96258..96797 - 179 15639081 - TP0087 - hypothetical protein 87 48.62 0 96781..97395 - 204 15639082 - TP0088 - hypothetical protein 88 45.39 -1 97425..98660 - 411 15639083 - TP0089 - cyclic nucleotide binding protein 89 57.75 +1 98743..99807 - 354 15639084 - TP0090 - UDP-N-acetylmuramate dehydrogenase (murB) 90 54.51 0 99989..101551 + 520 15639085 - TP0091 - cysteinyl-tRNA synthetase (cysS) 91 54.19 0 101622..102110 + 162 15639086 - TP0092 - RNA polymerase sigma-24 factor (rpoE) 92 55.25 0 102094..102741 + 215 15639087 - TP0093 - hypothetical protein 93 51.43 0 102879..103889 + 336 15639088 - TP0094 - phosphate acetyltransferase (pta) 94 56.65 0 103889..105835 + 648 15639089 - TP0095 - hypothetical protein 95 53.44 0 105909..106271 - 120 15639090 - TP0096 - dnaK suppressor, putative 96 54.79 0 106441..106659 + 72 15639091 - TP0097 - translation initiation factor 1 (infA) 97 60.22 +1 106719..107369 - 216 15639092 - TP0098 - heat-shock protein, putative 98 55.56 0 107373..108128 - 251 15639093 pyrH TP0099 - uridylate kinase 99 54.89 0 108323..108925 + 200 15639094 - TP0100 - thioredoxin, putative 100 55.35 0 108918..109712 + 264 15639095 - TP0101 - cytochrome c biogenesis protein (ccdA) 101 45.09 -1 109750..111723 - 657 15639096 - TP0102 - rep helicase, single-stranded DNA-dependent ATPase (rep) 102 52.74 0 111788..113611 + 607 15639097 - TP0103 - ATP-dependent DNA helicase, putative 103 48.43 -1 113858..115639 + 593 15639098 - TP0104 - 5'-nucleotidase (ushA) 104 44.76 -1 115806..118799 + 997 15639099 - TP0105 - DNA polymerase I (polA) 105 49.18 0 118831..120363 - 510 15639100 - TP0106 - carnitine transporter, putative 106 47.02 -1 120344..121921 - 525 15639101 - TP0107 - licC protein (licC) 107 51.08 0 122275..123660 - 461 15639102 - TP0108 - diphosphate--fructose-6-phosphate 1-phosphotransferase 108 55.29 0 123762..124640 - 292 15639103 - TP0109 - rRNA methylase, putative 109 49.60 0 125181..126914 + 577 15639104 - TP0110 - hypothetical protein 110 47.90 -1 126974..128401 + 475 15639105 - TP0111 - RNA polymerase sigma-54 factor (rpoN) 111 46.86 -1 128398..129750 - 450 15639106 - TP0112 - aminopeptidase C (pepC) 112 46.61 -1 129892..130878 + 328 15639107 - TP0113 - lambda CII stability-governing protein (hflK) 113 49.60 0 130883..131878 + 331 15639108 - TP0114 - lambda CII stability-governing protein (hflC) 114 54.44 0 131903..132712 - 269 15639109 - TP0115 - phosphomethypyrimidine kinase (thiD) 115 45.34 -1 132863..134869 + 668 15639110 - TP0116 - excinuclease ABC subunit B 116 56.26 0 134901..136697 - 598 15639111 - TP0117 - TPR protein C (tprC) 117 55.61 0 136777..138042 - 421 15639112 - TP0118 - hypothetical protein 118 55.15 0 138140..138799 - 219 15639113 - TP0119 - amino acid ABC transporter, permease protein (yaeE) 119 51.98 0 138799..139608 - 269 15639114 - TP0120 - amino acid ABC transporter ATP-binding protein 120 57.21 +1 139738..140805 + 355 15639115 - TP0121 - hypothetical protein 121 53.96 0 141025..142881 - 618 15639116 - TP0122 - phosphoenolpyruvate carboxykinase 122 48.89 0 142987..145557 + 856 15639117 - TP0123 - hypothetical protein 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.