version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 637 49.89 0 701573..702901 - 442 15639628 hisS TP0641 - histidyl-tRNA synthetase 638 49.69 0 703042..704802 + 586 15639629 - TP0642 - phosphomannomutase (manB) 639 46.60 -1 704799..705446 + 215 15639630 - TP0643 - DNA polymerase III, subunit epsilon (dnaQ) 640 47.45 -1 705443..707029 - 528 15639631 lysK TP0644 - lysyl-tRNA synthetase 641 55.37 0 707060..707236 - 58 15639632 - TP0645 - hypothetical protein 642 49.96 0 707295..708617 - 440 15639633 - TP0646 - hypothetical protein 643 49.41 0 708529..709809 - 426 15639634 - TP0647 - seryl-tRNA synthetase 644 50.61 0 709859..711907 - 682 15639635 - TP0648 - hypothetical protein 645 47.37 -1 711852..712649 - 265 15639636 - TP0649 - hemolysin (tlyC) 646 49.69 0 712637..713119 - 160 15639637 - TP0650 - putative metalloprotease 647 52.20 0 713125..715536 - 803 15639638 - TP0651 - hypothetical protein 648 54.04 0 715712..716851 + 379 15639639 - TP0652 - spermidine/putrescine ABC transporter, ATP-binding protein (potA) 649 55.11 0 716848..717747 + 299 15639640 - TP0653 - spermidine/putrescine ABC transporter, permease protein (potB) 650 50.06 0 717740..718558 + 272 15639641 - TP0654 - spermidine/putrescine ABC transporter, permease protein (potC) 651 47.56 -1 718594..719640 + 348 15639642 - TP0655 - spermidine/putrescine ABC transporter, periplasmic binding protein (potD) 652 55.88 0 719609..719710 + 33 15639643 - TP0656 - hypothetical protein 653 49.10 0 719695..719916 - 73 15639644 - TP0657 - carbon storage regulator (csrA) 654 48.57 -1 719910..720362 - 150 15639645 - TP0658 - flagellar assembly protein FliW 655 51.96 0 720381..721631 - 416 15639646 - TP0659 - flagellar hook-associated protein FlgL 656 51.17 0 721665..723542 - 625 15639647 flgK TP0660 - flagellar hook-associated protein FlgK 657 55.36 0 723648..724160 - 170 15639648 - TP0661 - hypothetical protein 658 53.35 0 724283..725281 - 332 15639649 - TP0662 - fructose-bisphosphate aldolase 659 54.73 0 725548..726276 + 242 15639650 - TP0663 - outer membrane protein, putative 660 54.55 0 726273..726998 + 241 15639651 - TP0664 - flagellar filament outer layer protein (flaA-2) 661 57.54 +1 727016..727771 - 251 15639652 - TP0665 - hypothetical protein 662 53.74 0 727768..728061 - 97 15639653 - TP0666 - hypothetical protein 663 50.24 0 728105..729772 - 555 15639654 - TP0667 - uridine kinase (udk) 664 44.66 -1 730003..730611 - 202 15639655 - TP0668 - hypothetical protein 665 44.38 -1 730608..734120 - 1170 15639656 dnaE TP0669 - DNA polymerase III subunit alpha 666 54.41 0 734274..735464 - 396 15639657 - TP0670 - D-alanine--D-alanine ligase (ddlA) 667 49.95 0 735466..736500 - 344 15639658 - TP0671 - sn-1,2-diacylglycerol cholinephosphotransferase, putative 668 51.91 0 736531..737919 - 462 15639659 - TP0672 - glycyl-tRNA synthetase 669 56.32 0 738054..739667 - 537 15639660 gltX TP0673 - glutamyl-tRNA synthetase 670 63.38 +2 739845..740453 + 202 15639661 - TP0674 - hypothetical protein 671 53.95 0 740459..741457 + 332 15639662 - TP0675 - hypothetical protein 672 60.57 +1 741469..741747 - 92 15639663 - TP0676 - hypothetical protein 673 58.95 +1 741769..742377 - 202 15639664 - TP0677 - hypothetical protein 674 59.85 +1 742631..743554 + 307 15639665 - TP0678 - hypothetical protein 675 52.83 0 743551..743868 + 105 15639666 - TP0679 - hypothetical protein 676 52.88 0 743909..744967 - 352 15639667 - TP0680 - O-sialoglycoprotein endopeptidase 677 56.52 0 745018..746091 - 357 15639668 - TP0681 - alanine racemase (alr) 678 57.05 0 746180..746782 - 200 15639669 - TP0682 - cell division protein (ftsJ) 679 53.88 0 746875..747969 + 364 15639670 - TP0683 - octaprenyl-diphosphate synthase 680 54.62 0 748262..749473 + 403 15639671 - TP0684 - methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2) 681 50.70 0 749593..751083 + 496 15639672 - TP0685 - methylgalactoside ABC transporter, ATP binding protein (mglA) 682 51.94 0 751098..752693 + 531 15639673 - TP0686 - methylgalactoside ABC transporter, permease protein (mglC) 683 42.50 -2 752821..754881 - 686 15639674 - TP0687 - DNA recombinase (recG) 684 38.95 -2 754937..755950 - 337 15639675 - TP0688 - immunity protein (mccF) 685 43.82 -2 755951..757333 - 460 15639676 engA TP0689 - GTP-binding protein EngA 686 44.50 -1 757369..757950 - 193 15639677 - TP0690 - hypothetical protein 687 46.77 -1 757943..758701 - 252 15639678 - TP0691 - hypothetical protein 688 51.06 0 758729..759952 - 407 15639679 - TP0692 - recA protein (recA) 689 56.69 0 760213..761535 - 440 15639680 - TP0693 - hypothetical protein 690 58.55 +1 761695..762372 + 225 15639681 - TP0694 - 5,10-methenyltetrahydrofolate synthetase, putative 691 59.87 +1 762460..764253 + 597 15639682 - TP0695 - phosphoribosylglycinamide formyltransferase, putative 692 54.48 0 764241..765077 - 278 15639683 - TP0696 - nicotinamidase, putative 693 56.49 0 765139..765747 - 202 15639684 - TP0697 - hypothetical protein 694 53.11 0 765778..766323 - 181 15639685 - TP0698 - hypothetical protein 695 55.86 0 766320..766430 - 36 15639686 - TP0699 - hypothetical protein 696 57.00 0 766436..766828 - 130 15639687 - TP0700 - hypothetical protein 697 51.47 0 766966..767169 - 67 15639688 - TP0701 - DNA-directed RNA polymerase, putative 698 60.34 +1 767339..767875 - 178 15639689 - TP0702 - hypothetical protein 699 57.71 +1 767890..768570 - 226 15639690 - TP0703 - hypothetical protein 700 53.23 0 768570..770690 - 706 15639691 - TP0704 - single-stranded-DNA-specific exonuclease (recJ) 701 55.56 0 770833..773487 - 884 15639692 - TP0705 - penicillin-binding protein (pbp-2) 702 56.42 0 773784..774710 - 308 15639693 - TP0706 - hypothetical protein 703 63.54 +2 774772..775251 - 159 15639694 - TP0707 - hypothetical protein 704 58.33 +1 775317..775832 + 171 15639695 - TP0708 - hypothetical protein 705 50.82 0 775888..776676 + 262 15639696 - TP0709 - RNA polymerase sigma factor WhiG 706 52.31 0 776685..778655 + 656 15639697 - TP0710 - hypothetical protein 707 53.05 0 778692..779264 + 190 15639698 - TP0711 - hypothetical protein 708 44.15 -2 779279..780193 - 304 15639699 - TP0712 - ATP-binding protein (ylxH-1) 709 42.85 -2 780165..781478 - 437 15639700 - TP0713 - flagellar-associated GTP-binding protein (flhF) 710 42.98 -2 781513..783636 - 707 15639701 flhA TP0714 - flagellar biosynthesis protein FlhA 711 41.56 -2 783645..784775 - 376 15639702 flhB TP0715 - flagellar biosynthesis protein FlhB 712 43.73 -2 784772..785569 - 265 15639703 - TP0716 - flagellar biosynthetic protein (fliR) 713 47.72 -1 785582..785866 - 94 15639704 - TP0717 - flagellar biosynthetic protein (fliQ) 714 48.53 -1 785885..786700 - 271 15639705 fliP TP0718 - flagellar biosynthesis protein FliP 715 55.77 0 786697..787485 - 262 15639706 - TP0719 - hypothetical protein 716 52.53 0 787421..788467 - 348 15639707 - TP0720 - flagellar motor switch protein (fliY) 717 51.30 0 788460..789494 - 344 15639708 fliM TP0721 - flagellar motor switch protein FliM 718 50.46 0 789516..790064 - 182 15639709 fliL TP0722 - flagellar basal body-associated protein FliL 719 55.56 0 790043..790177 - 44 15639710 - TP0723 - hypothetical protein 720 51.88 0 790174..790890 - 238 15639711 motB TP0724 - flagellar motor protein MotB 721 51.28 0 790896..791675 - 259 15639712 - TP0725 - flagellar motor rotation protein (motA) 722 45.45 -1 791691..791888 - 65 15639713 - TP0726 - flagellar protein (flbD) 723 50.65 0 791946..793337 - 463 15639714 flgE TP0727 - flagellar hook protein FlgE 724 53.90 0 793408..793869 - 153 15639715 flgD TP0728 - flagellar basal body rod modification protein 725 62.65 +2 793945..795588 - 547 15639716 - TP0729 - hypothetical protein 726 55.37 0 795557..796654 + 365 15639717 - TP0730 - hypothetical protein 727 58.93 +1 796674..797384 + 236 15639718 - TP0731 - hypothetical protein 728 62.03 +2 797349..798296 - 315 15639719 - TP0732 - methylenetetrahydrofolate dehydrogenase (folD) 729 59.24 +1 798392..799051 + 219 15639720 - TP0733 - hypothetical protein 730 57.41 +1 799084..799785 - 233 15639721 - TP0734 - purine nucleoside phosphorylase (deoD) 731 55.11 0 799867..801423 - 518 15639722 - TP0735 - putative oxidoreductase 732 51.72 0 801426..802268 - 280 15639723 - TP0736 - ferredoxin--NADP(+) reductase subunit alpha 733 52.17 0 802502..803812 + 436 15639724 - TP0737 - sugar ABC transporter, periplasmic binding protein (msmE) 734 58.93 +1 803858..804193 - 111 15639725 - TP0738 - hypothetical protein 735 45.86 -1 804190..805386 - 398 15639726 - TP0739 - hypothetical protein 736 55.38 0 805460..806026 - 188 15639727 - TP0740 - hypothetical protein 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0