version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 609 52.08 0 664329..665768 + 479 15639600 - TP0612 - hypothetical protein 610 52.83 0 665795..666943 + 382 15639601 - TP0613 - hypothetical protein 611 54.40 0 666940..668154 + 404 15639602 - TP0614 - nitrogen fixation protein (nifS-1) 612 54.05 0 668205..668648 + 147 15639603 - TP0615 - nitrogen fixation protein (nifU) 613 55.16 0 668669..669433 + 254 15639604 - TP0616 - ribose 5-phosphate isomerase (rpiA) 614 59.14 +1 669460..669738 - 92 15639605 - TP0617 - hypothetical protein 615 60.83 +1 669834..670193 - 119 15639606 - TP0618 - hypothetical protein 616 60.76 +1 670249..671061 - 270 15639607 - TP0619 - hypothetical protein 617 57.43 +1 671058..672887 - 609 15639608 - TP0620 - TPR protein I (tprI) 618 56.43 0 672945..675221 - 758 15639609 - TP0621 - TPR protein J (tprJ) 619 55.39 0 675281..677062 - 593 15639610 - TP0622 - hypothetical protein 620 60.13 +1 676479..678818 + 779 15639611 - TP0623 - membrane-bound lytic murein transglycosylase D (dniR) 621 55.00 0 678822..680252 + 476 15639612 - TP0624 - hypothetical protein 622 49.27 0 680252..681004 + 250 15639613 - TP0625 - hypothetical protein 623 49.15 0 681001..682176 + 391 15639614 - TP0626 - exonuclease, putative 624 46.56 -1 682173..685316 + 1047 15639615 - TP0627 - exonuclease (sbcC) 625 51.55 0 685313..686794 + 493 15639616 - TP0628 - nicotinate phosphoribosyltransferase 626 56.36 0 686965..687789 + 274 15639617 - TP0629 - hypothetical protein 627 49.78 0 687959..688870 + 303 15639618 - TP0630 - chemotaxis protein methyltransferase (cheR) 628 53.38 0 688917..690128 + 403 15639619 - TP0631 - protein-glutamate methylesterase (cheB) 629 56.61 0 690233..691246 + 337 15639620 - TP0632 - tryptophanyl-tRNA synthetase 630 53.20 0 691387..692262 + 291 15639621 - TP0633 - bifunctional methionine sulfoxide reductase B/A protein 631 51.17 0 692381..694852 + 823 15639622 - TP0634 - DNA ligase (lig) 632 51.10 0 694887..695657 - 256 15639623 - TP0636 - hypothetical protein 633 52.68 0 695695..696645 - 316 15639624 miaA TP0637 - tRNA delta(2)-isopentenylpyrophosphate transferase 634 55.40 0 696869..697303 - 144 15639625 - TP0638 - hypothetical protein 635 55.47 0 697723..699687 + 654 15639626 - TP0639 - methyl-accepting chemotaxis protein (mcp2-2) 636 51.49 0 699711..701555 + 614 15639627 - TP0640 - methyl-accepting chemotaxis protein (mcp2-3) 637 49.89 0 701573..702901 - 442 15639628 hisS TP0641 - histidyl-tRNA synthetase 638 49.69 0 703042..704802 + 586 15639629 - TP0642 - phosphomannomutase (manB) 639 46.60 -1 704799..705446 + 215 15639630 - TP0643 - DNA polymerase III, subunit epsilon (dnaQ) 640 47.45 -1 705443..707029 - 528 15639631 lysK TP0644 - lysyl-tRNA synthetase 641 55.37 0 707060..707236 - 58 15639632 - TP0645 - hypothetical protein 642 49.96 0 707295..708617 - 440 15639633 - TP0646 - hypothetical protein 643 49.41 0 708529..709809 - 426 15639634 - TP0647 - seryl-tRNA synthetase 644 50.61 0 709859..711907 - 682 15639635 - TP0648 - hypothetical protein 645 47.37 -1 711852..712649 - 265 15639636 - TP0649 - hemolysin (tlyC) 646 49.69 0 712637..713119 - 160 15639637 - TP0650 - putative metalloprotease 647 52.20 0 713125..715536 - 803 15639638 - TP0651 - hypothetical protein 648 54.04 0 715712..716851 + 379 15639639 - TP0652 - spermidine/putrescine ABC transporter, ATP-binding protein (potA) 649 55.11 0 716848..717747 + 299 15639640 - TP0653 - spermidine/putrescine ABC transporter, permease protein (potB) 650 50.06 0 717740..718558 + 272 15639641 - TP0654 - spermidine/putrescine ABC transporter, permease protein (potC) 651 47.56 -1 718594..719640 + 348 15639642 - TP0655 - spermidine/putrescine ABC transporter, periplasmic binding protein (potD) 652 55.88 0 719609..719710 + 33 15639643 - TP0656 - hypothetical protein 653 49.10 0 719695..719916 - 73 15639644 - TP0657 - carbon storage regulator (csrA) 654 48.57 -1 719910..720362 - 150 15639645 - TP0658 - flagellar assembly protein FliW 655 51.96 0 720381..721631 - 416 15639646 - TP0659 - flagellar hook-associated protein FlgL 656 51.17 0 721665..723542 - 625 15639647 flgK TP0660 - flagellar hook-associated protein FlgK 657 55.36 0 723648..724160 - 170 15639648 - TP0661 - hypothetical protein 658 53.35 0 724283..725281 - 332 15639649 - TP0662 - fructose-bisphosphate aldolase 659 54.73 0 725548..726276 + 242 15639650 - TP0663 - outer membrane protein, putative 660 54.55 0 726273..726998 + 241 15639651 - TP0664 - flagellar filament outer layer protein (flaA-2) 661 57.54 +1 727016..727771 - 251 15639652 - TP0665 - hypothetical protein 662 53.74 0 727768..728061 - 97 15639653 - TP0666 - hypothetical protein 663 50.24 0 728105..729772 - 555 15639654 - TP0667 - uridine kinase (udk) 664 44.66 -1 730003..730611 - 202 15639655 - TP0668 - hypothetical protein 665 44.38 -1 730608..734120 - 1170 15639656 dnaE TP0669 - DNA polymerase III subunit alpha 666 54.41 0 734274..735464 - 396 15639657 - TP0670 - D-alanine--D-alanine ligase (ddlA) 667 49.95 0 735466..736500 - 344 15639658 - TP0671 - sn-1,2-diacylglycerol cholinephosphotransferase, putative 668 51.91 0 736531..737919 - 462 15639659 - TP0672 - glycyl-tRNA synthetase 669 56.32 0 738054..739667 - 537 15639660 gltX TP0673 - glutamyl-tRNA synthetase 670 63.38 +2 739845..740453 + 202 15639661 - TP0674 - hypothetical protein 671 53.95 0 740459..741457 + 332 15639662 - TP0675 - hypothetical protein 672 60.57 +1 741469..741747 - 92 15639663 - TP0676 - hypothetical protein 673 58.95 +1 741769..742377 - 202 15639664 - TP0677 - hypothetical protein 674 59.85 +1 742631..743554 + 307 15639665 - TP0678 - hypothetical protein 675 52.83 0 743551..743868 + 105 15639666 - TP0679 - hypothetical protein 676 52.88 0 743909..744967 - 352 15639667 - TP0680 - O-sialoglycoprotein endopeptidase 677 56.52 0 745018..746091 - 357 15639668 - TP0681 - alanine racemase (alr) 678 57.05 0 746180..746782 - 200 15639669 - TP0682 - cell division protein (ftsJ) 679 53.88 0 746875..747969 + 364 15639670 - TP0683 - octaprenyl-diphosphate synthase 680 54.62 0 748262..749473 + 403 15639671 - TP0684 - methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-2) 681 50.70 0 749593..751083 + 496 15639672 - TP0685 - methylgalactoside ABC transporter, ATP binding protein (mglA) 682 51.94 0 751098..752693 + 531 15639673 - TP0686 - methylgalactoside ABC transporter, permease protein (mglC) 683 42.50 -2 752821..754881 - 686 15639674 - TP0687 - DNA recombinase (recG) 684 38.95 -2 754937..755950 - 337 15639675 - TP0688 - immunity protein (mccF) 685 43.82 -2 755951..757333 - 460 15639676 engA TP0689 - GTP-binding protein EngA 686 44.50 -1 757369..757950 - 193 15639677 - TP0690 - hypothetical protein 687 46.77 -1 757943..758701 - 252 15639678 - TP0691 - hypothetical protein 688 51.06 0 758729..759952 - 407 15639679 - TP0692 - recA protein (recA) 689 56.69 0 760213..761535 - 440 15639680 - TP0693 - hypothetical protein 690 58.55 +1 761695..762372 + 225 15639681 - TP0694 - 5,10-methenyltetrahydrofolate synthetase, putative 691 59.87 +1 762460..764253 + 597 15639682 - TP0695 - phosphoribosylglycinamide formyltransferase, putative 692 54.48 0 764241..765077 - 278 15639683 - TP0696 - nicotinamidase, putative 693 56.49 0 765139..765747 - 202 15639684 - TP0697 - hypothetical protein 694 53.11 0 765778..766323 - 181 15639685 - TP0698 - hypothetical protein 695 55.86 0 766320..766430 - 36 15639686 - TP0699 - hypothetical protein 696 57.00 0 766436..766828 - 130 15639687 - TP0700 - hypothetical protein 697 51.47 0 766966..767169 - 67 15639688 - TP0701 - DNA-directed RNA polymerase, putative 698 60.34 +1 767339..767875 - 178 15639689 - TP0702 - hypothetical protein 699 57.71 +1 767890..768570 - 226 15639690 - TP0703 - hypothetical protein 700 53.23 0 768570..770690 - 706 15639691 - TP0704 - single-stranded-DNA-specific exonuclease (recJ) 701 55.56 0 770833..773487 - 884 15639692 - TP0705 - penicillin-binding protein (pbp-2) 702 56.42 0 773784..774710 - 308 15639693 - TP0706 - hypothetical protein 703 63.54 +2 774772..775251 - 159 15639694 - TP0707 - hypothetical protein 704 58.33 +1 775317..775832 + 171 15639695 - TP0708 - hypothetical protein 705 50.82 0 775888..776676 + 262 15639696 - TP0709 - RNA polymerase sigma factor WhiG 706 52.31 0 776685..778655 + 656 15639697 - TP0710 - hypothetical protein 707 53.05 0 778692..779264 + 190 15639698 - TP0711 - hypothetical protein 708 44.15 -2 779279..780193 - 304 15639699 - TP0712 - ATP-binding protein (ylxH-1) 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.