version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 492 51.05 0 526077..527894 + 605 15639483 - TP0492 - DNA primase (dnaG) 493 49.02 0 527891..529726 + 611 15639484 - TP0493 - RNA polymerase sigma factor RpoD 494 52.07 0 529736..530557 + 273 15639485 - TP0494 - hypothetical protein 495 54.67 0 530646..530795 - 49 15639486 - TP0495 - hypothetical protein 496 53.33 0 530887..531876 + 329 15639487 - TP0496 - hypothetical protein 497 50.82 0 531889..532923 + 344 15639488 - TP0497 - rod shape-determining protein (mreB) 498 48.15 -1 532928..533791 + 287 15639489 - TP0498 - rod shape-determining protein (mreC) 499 43.20 -2 533788..534294 + 168 15639490 - TP0499 - rod shape-determining protein (mreD) 500 48.43 -1 534295..536169 + 624 15639491 - TP0500 - penicillin-binding protein (pbp-1) 501 46.77 -1 536166..537467 + 433 15639492 - TP0501 - rod shape-determining protein (rodA) 502 50.61 0 537493..538389 + 298 15639493 - TP0502 - hypothetical protein 503 53.90 0 538368..538931 + 187 15639494 - TP0503 - hypothetical protein 504 60.28 +1 538913..539053 + 46 15639495 - TP0504 - hypothetical protein 505 53.63 0 539062..540396 - 444 15639496 - TP0505 - hexokinase (hxk) 506 54.25 0 541131..542459 + 442 15639497 tig TP0506 - trigger factor 507 52.94 0 542452..543063 + 203 15639498 - TP0507 - ATP-dependent Clp protease proteolytic component (clpP-1) 508 48.56 -1 543050..544297 + 415 15639499 clpX TP0508 - ATP-dependent protease ATP-binding subunit 509 51.32 0 544394..544960 + 188 15639500 - TP0509 - alkyl hydroperoxide reductase (ahpC) 510 52.20 0 545141..546958 - 605 15639501 - TP0510 - GTP-binding protein LepA 511 49.76 0 547001..547627 + 208 15639502 - TP0511 - transcription factor (carD) 512 57.08 0 547672..548871 + 399 15639503 - TP0512 - hypothetical protein 513 50.96 0 548945..550345 + 466 15639504 trkA TP0513 - potassium transporter peripheral membrane component 514 47.31 -1 550459..553341 + 960 15639505 - TP0514 - excinuclease ABC, subunit A (uvrA) 515 42.14 -2 553338..556313 + 991 15639506 - TP0515 - hypothetical protein 516 41.87 -2 556327..557907 - 526 15639507 - TP0516 - virulence factor (mviN) 517 46.87 -1 557904..558494 - 196 15639508 - TP0517 - Holliday junction nuclease (ruvC) 518 49.21 0 558476..559168 - 230 15639509 - TP0518 - hypothetical protein 519 42.99 -2 559165..560541 - 458 15639510 - TP0519 - response regulatory protein (atoC) 520 49.53 0 561736..563007 - 423 15639511 - TP0521 - DNA polymerase III, gamma and tau subunits, putative 521 45.62 -1 563018..563497 - 159 15639512 - TP0522 - hypothetical protein 522 52.90 0 563494..564648 - 384 15639513 - TP0523 - UDP-N-glucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) 523 52.04 0 564652..567297 - 881 15639514 - TP0524 - ATP-dependent protease LA (lon-2) 524 49.82 0 567433..567996 + 187 15639515 - TP0525 - translation elongation factor P (efp) 525 49.48 0 568144..570150 + 668 15639516 - TP0526 - ATP-dependent helicase (hrpA) 526 52.70 0 570198..570827 - 209 15639517 - TP0527 - V-type ATPase, subunit D (atpD-2) 527 51.98 0 570922..572364 - 480 15639518 - TP0528 - V-type ATP synthase subunit B 528 54.62 0 572361..574178 - 605 15639519 - TP0529 - V-type ATP synthase subunit A 529 55.50 0 574175..574801 - 208 15639520 - TP0530 - V-type ATPase, subunit E, putative 530 57.23 +1 574807..575145 - 112 15639521 - TP0531 - V-type ATPase, subunit F, putative 531 53.41 0 575765..577129 - 454 15639522 - TP0533 - V-type ATPase, subunit I (atpI-2) 532 54.87 0 577122..578147 - 341 15639523 - TP0534 - hypothetical protein 533 60.09 +1 578151..578363 - 70 15639524 - TP0535 - hypothetical protein 534 57.96 +1 578504..578905 - 133 15639525 secG TP0536 - preprotein translocase subunit SecG 535 56.27 0 579055..579804 - 249 15639526 - TP0537 - triosephosphate isomerase (tpi) 536 53.97 0 579955..581214 - 419 15639527 pgk TP0538 - phosphoglycerate kinase 537 51.35 0 581186..581407 + 73 15639528 - TP0539 - hypothetical protein 538 50.27 0 581688..582059 + 123 15639529 - TP0540 - anti-sigma F factor antagonist (SpoIIAA-2) 539 55.10 0 582189..583148 + 319 15639530 era TP0541 - GTP-binding protein Era 540 53.08 0 583145..584866 - 573 15639531 - TP0542 - diphosphate--fructose-6-phosphate 1-phosphotransferase 541 52.05 0 584926..585609 - 227 15639532 - TP0543 - Holliday junction DNA helicase (ruvA) 542 50.94 0 585651..587519 - 622 15639533 - TP0544 - hypothetical protein 543 51.17 0 587544..588608 - 354 15639534 - TP0545 - methylgalactoside ABC transporter, periplasmic galactose-binding protein (mglB-1) 544 55.17 0 588693..590693 - 666 15639535 - TP0546 - periplasmic serine protease, putative 545 64.19 +2 590405..591535 - 376 15639536 - TP0547 - penicillin tolerance protein (lytB) 546 57.62 +1 591679..592983 + 434 15639537 - TP0548 - hypothetical protein 547 55.26 0 593081..595525 + 814 15639538 - TP0549 - ATPase (clpC) 548 56.18 0 595566..597053 - 495 15639539 trmE TP0550 - tRNA modification GTPase TrmE 549 57.12 0 597057..598145 - 362 15639540 - TP0551 - phosphatase 550 57.12 0 598158..598691 - 177 15639541 - TP0552 - hypothetical protein 551 47.69 -1 598935..600146 + 403 15639542 - TP0553 - hypothetical protein 552 54.56 0 600181..600849 + 222 15639543 - TP0554 - phosphoglycolate phosphatase (gph-2) 553 54.49 0 600913..602103 - 396 15639544 - TP0555 - glutamate/ aspartate transporter, putative 554 53.98 0 602326..603318 - 330 15639545 - TP0556 - asparagine synthetase AsnA 555 51.82 0 603423..604136 + 237 15639546 - TP0557 - hypothetical protein 556 56.44 0 604166..605074 + 302 15639547 - TP0558 - hypothetical protein 557 55.39 0 605136..606341 + 401 15639548 - TP0559 - hypothetical protein 558 54.78 0 606394..608379 - 661 15639549 - TP0560 - transketolase A (tktA) 559 59.39 +1 608490..609341 - 283 15639550 - TP0561 - hypothetical protein 560 57.08 0 609512..610648 + 378 15639551 - TP0562 - spore coat polysaccharide biosynthesis protein (spsE) 561 55.80 0 610639..611052 + 137 15639552 - TP0563 - hypothetical protein 562 51.69 0 611049..613085 + 678 15639553 - TP0564 - hypothetical protein 563 50.29 0 612967..614187 - 406 15639554 - TP0565 - hypothetical protein 564 45.50 -1 614198..615685 - 495 15639555 - TP0566 - alginate O-acetylation protein (algI) 565 50.24 0 615717..616337 - 206 15639556 - TP0567 - hypothetical protein 566 54.98 0 616416..617048 - 210 15639557 - TP0568 - 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase (eda) 567 56.47 0 617170..619494 - 774 15639558 - TP0569 - aminopeptidase P 568 56.03 0 619519..620364 - 281 15639559 - TP0570 - hypothetical protein 569 55.56 0 620391..621056 - 221 15639560 - TP0571 - Tp70 protein 570 56.23 0 621074..622156 - 360 15639561 - TP0572 - hypothetical protein 571 44.09 -2 622147..622239 + 30 15639562 - TP0573 - hypothetical protein 572 54.02 0 622266..623570 - 434 15639563 - TP0574 - carboxypeptidase, 47 kDa 573 56.01 0 625802..626908 + 368 15639564 - TP0576 - peptide chain release factor 2 (prfB) 574 56.04 0 626800..628644 + 614 15639565 - TP0577 - hypothetical protein 575 54.39 0 628651..629538 + 295 15639566 - TP0578 - cell division protein (ftsY) 576 52.77 0 629535..630311 + 258 15639567 - TP0579 - hypothetical protein 577 46.90 -1 630304..631593 + 429 15639568 - TP0580 - hypothetical protein 578 46.70 -1 631586..632266 + 226 15639569 - TP0581 - ABC transporter, ATP-binding protein 579 50.81 0 632263..633750 + 495 15639570 - TP0582 - hypothetical protein 580 53.17 0 633734..633859 - 41 15639571 - TP0583 - hypothetical protein 581 48.72 0 633846..635255 + 469 15639572 - TP0584 - hypothetical protein 582 54.50 0 635248..636891 + 547 15639573 - TP0585 - oligopeptide ABC transporter, periplasmic binding protein (oppA) 583 53.55 0 636980..639616 + 878 15639574 leuS TP0586 - leucyl-tRNA synthetase 584 54.55 0 639596..639826 - 76 15639575 - TP0587 - hypothetical protein 585 48.24 -1 639853..640617 - 254 15639576 - TP0588 - hypothetical protein 586 49.81 0 640705..640971 - 88 15639577 - TP0589 - phosphocarrier protein HPr (ptsH) 587 49.57 0 640943..641059 - 38 15639578 - TP0590 - ribosomal protein L36 (rpmJ-2) 588 48.08 -1 641016..642005 - 329 161579585 - TP0591 - HPr kinase/phosphorylase 589 52.10 0 642738..644240 + 500 15639580 - TP0592 - hypothetical protein 590 55.11 0 644177..646210 + 677 15639581 - TP0593 - hypothetical protein 591 52.05 0 646297..646905 - 202 15639582 - TP0594 - hypothetical protein 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.