version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 262 51.85 0 273339..274013 + 224 15639254 - TP0262 - catabolite gene activator (Crp) 263 57.98 +1 274028..275812 + 594 15639255 - TP0263 - hypothetical protein 264 56.77 0 275817..276473 + 218 15639256 - TP0264 - deoxyribose-phosphate aldolase (deoC) 265 54.97 0 276905..278272 - 455 15639257 - TP0265 - amino acid ABC transporter, permease protein (braC) 266 53.17 0 278323..278448 + 41 15639258 - TP0266 - hypothetical protein 267 51.37 0 283557..283922 + 121 15639259 - TP0267 - hypothetical protein 268 58.26 +1 283919..284572 + 217 15639260 - TP0268 - hypothetical protein 269 50.38 0 284582..286030 + 482 15639261 - TP0269 - hypothetical protein 270 54.84 0 286104..287540 + 478 15639262 - TP0270 - polynucleotide adenylyltransferase (pcnA) 271 53.13 0 287537..288511 - 324 15639263 - TP0271 - chromosome partitioning protein (parB) 272 48.16 -1 288498..289259 - 253 15639264 - TP0272 - SpoOJ regulator (soj) 273 53.54 0 289392..290183 + 263 15639265 - TP0273 - hypothetical protein 274 56.09 0 290221..290721 - 166 15639266 - TP0274 - deoxycytidylate deaminase, putative 275 50.93 0 290810..291559 - 249 15639267 - TP0275 - UDP-N-acetyl-D-mannosamine transferase, putative 276 56.72 0 291538..292422 - 294 15639268 - TP0276 - hypothetical protein 277 50.48 0 292595..293941 - 448 15639269 - TP0277 - carboxyl-terminal protease (CTP) 278 61.24 +1 294069..294197 + 42 15639270 - TP0278 - hypothetical protein 279 55.25 0 294243..296834 + 863 15639271 - TP0279 - bifunctional cytidylate kinase/ribosomal protein S1 280 58.91 +1 296831..296959 + 42 15639272 - TP0280 - hypothetical protein 281 58.14 +1 296976..297104 + 42 15639273 - TP0281 - hypothetical protein 282 59.44 +1 297097..297816 + 239 15639274 - TP0282 - hypothetical protein 283 51.67 0 297994..298473 + 159 15639275 - TP0283 - lipopolysaccharide core biosynthesis protein (kdtB) 284 54.55 0 298578..299237 + 219 15639276 - TP0284 - hypothetical protein 285 48.80 0 299177..300256 + 359 15639277 - TP0285 - hypothetical protein 286 48.09 -1 300228..300593 + 121 15639278 - TP0286 - hypothetical protein 287 45.67 -1 300560..301183 + 207 15639279 - TP0287 - hypothetical protein 288 52.32 0 301183..302130 + 315 15639280 - TP0288 - spore coat polysaccharide biosynthesis protein (spsF) 289 48.10 -1 302153..303757 + 534 15639281 - TP0289 - hypothetical protein 290 46.40 -1 303812..304645 + 277 15639282 - TP0290 - hypothetical protein 291 50.68 0 304682..305563 + 293 15639283 - TP0291 - hypothetical protein 292 49.84 0 305554..306807 + 417 15639284 - TP0292 - outer membrane protein (tpn50) 293 55.37 0 306819..306995 + 58 15639285 - TP0293 - hypothetical protein 294 47.31 -1 306973..308238 + 421 15639286 - TP0294 - phosphoribosylpyrophosphate synthetase 295 52.53 0 308257..309501 + 414 15639287 - TP0295 - carhohydrate kinase (xylB) 296 51.89 0 309587..310222 + 211 15639288 - TP0296 - hypothetical protein 297 53.51 0 310186..310998 + 270 15639289 - TP0297 - hypothetical protein 298 54.84 0 311131..312162 + 343 15639290 - TP0298 - exported protein (tpn38b) 299 64.44 +2 312159..312383 + 74 15639291 - TP0299 - hypothetical protein 300 53.32 0 312368..313918 + 516 15639292 - TP0300 - ribose/galactose ABC transporter, ATP-binding protein (rbsA-1) 301 50.79 0 313915..315048 + 377 15639293 - TP0301 - hypothetical protein 302 55.41 0 315039..315980 + 313 15639294 - TP0302 - hypothetical protein 303 57.52 +1 315967..317913 - 648 15639295 - TP0303 - DNA mismatch repair protein (mutL) 304 56.31 0 317926..321045 - 1039 15639296 - TP0304 - hypothetical protein 305 58.25 +1 320972..322705 + 577 15639297 - TP0305 - CTP synthetase 306 53.66 0 322870..323484 + 204 15639298 rpsD TP0306 - 30S ribosomal protein S4 307 55.39 0 323571..324599 + 342 15639299 - TP0307 - hypothetical protein 308 56.52 0 324574..325539 + 321 15639300 - TP0308 - amino acid ABC transporter, periplasmic binding protein (hisJ) 309 57.26 +1 325605..326423 + 272 15639301 - TP0309 - amino acid ABC transporter, periplasmic binding protein 310 58.59 +1 326392..326775 + 127 15639302 - TP0310 - hypothetical protein 311 55.56 0 326754..326897 - 47 15639303 - TP0311 - hypothetical protein 312 60.75 +1 326881..327894 + 337 15639304 - TP0312 - hypothetical protein 313 56.75 0 327985..330273 + 762 15639305 - TP0313 - TPR protein E (tprE) 314 59.18 +1 330330..330476 - 48 15639306 - TP0314 - hypothetical protein 315 60.80 +1 330499..331146 - 215 15639307 - TP0315 - hypothetical protein 316 56.32 0 332393..334663 - 756 15639308 - TP0317 - TPR protein G (tprG) 317 61.67 +2 334615..334794 - 59 15639309 - TP0318 - hypothetical protein 318 54.33 0 334823..335884 + 353 15639310 - TP0319 - membrane lipoprotein (tmpC) 319 58.33 +1 335894..336049 + 51 15639311 - TP0320 - hypothetical protein 320 56.87 0 336125..337726 + 533 15639312 - TP0321 - ribose/galactose ABC transporter, ATP-binding protein (rbsA-2) 321 55.36 0 337636..338838 + 400 15639313 - TP0322 - ribose/galactose ABC transporter, permease protein (rbsC-1) 322 53.10 0 338835..339785 + 316 15639314 - TP0323 - ribose/galactose ABC transporter, permease protein (rbsC-2) 323 55.83 0 339889..341346 + 485 15639315 - TP0324 - hypothetical protein 324 54.53 0 341328..344294 + 988 15639316 - TP0325 - hypothetical protein 325 52.19 0 344276..346837 + 853 15639317 - TP0326 - outer membrane protein 326 51.06 0 346894..347412 + 172 15639318 - TP0327 - cationic outer membrane protein (ompH) 327 54.09 0 347468..350170 + 900 15639319 - TP0328 - DNA mismatch repair protein 328 54.38 0 350288..352012 + 574 15639320 - TP0329 - serine hydroxymethyltransferase 329 45.85 -1 351986..353782 - 598 15639321 - TP0330 - cell division protein, putative 330 55.21 0 354012..355478 - 488 15639322 - TP0331 - 6-phosphogluconate dehydrogenase 331 50.79 0 355494..355619 + 41 15639323 - TP0332 - hypothetical protein 332 50.22 0 355657..356349 + 230 15639324 - TP0333 - hypothetical protein 333 55.50 0 356374..357591 + 405 15639325 - TP0334 - hypothetical protein 334 57.83 +1 357588..358130 - 180 15639326 - TP0335 - hypothetical protein 335 51.91 0 357973..359673 + 566 15639327 - TP0336 - comE protein, putative 336 48.02 -1 359654..360511 + 285 15639328 ksgA TP0337 - dimethyladenosine transferase 337 49.28 0 360529..361017 + 162 15639329 - TP0338 - hypothetical protein 338 48.39 -1 361029..362024 + 331 15639330 - TP0339 - hypothetical protein 339 46.91 -1 362010..363482 - 490 15639331 - TP0340 - folylpolyglutamate synthetase (folC) 340 49.79 0 363501..364946 + 481 15639332 murC TP0341 - UDP-N-acetylmuramate--L-alanine ligase 341 48.31 -1 365067..365627 + 186 15639333 - TP0342 - cytidylate kinase 342 49.52 0 365621..366454 + 277 15639334 - TP0343 - A/G-specific adenine glycosylase, putative 343 49.63 0 366459..369881 - 1140 15639335 - TP0344 - transcription-repair coupling factor (trcF) 344 50.73 0 370034..371125 + 363 15639336 - TP0345 - phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) 345 54.84 0 371282..371983 + 233 15639337 - TP0346 - hypothetical protein 346 57.40 +1 371952..372782 + 276 15639338 - TP0347 - hypothetical protein 347 59.86 +1 372516..373925 - 469 15639339 - TP0348 - hypothetical protein 348 57.63 +1 373895..374425 - 176 15639340 - TP0349 - peptidyl-prolyl cis-trans isomerase, FKBP-type (slyD) 349 55.71 0 374639..375925 + 428 15639341 - TP0350 - glutamate-5-semialdehyde dehydrogenase (proA) 350 55.89 0 375922..376812 + 296 15639342 - TP0351 - gamma-glutamyl kinase 351 52.71 0 376944..377201 + 85 15639343 - TP0352 - hypothetical protein 352 60.00 +1 377198..377707 - 169 15639344 - TP0353 - ribonuclease H (rnhA) 353 47.21 -1 377970..378596 + 208 15639345 - TP0354 - thymidylate kinase (tmk) 354 47.66 -1 378563..378946 - 127 15639346 - TP0355 - hypothetical protein 355 47.80 -1 379151..379468 + 105 15639347 - TP0356 - RNA-binding protein, putative 356 58.84 +1 379570..380310 + 246 15639348 - TP0357 - biotin--acetyl-CoA-carboxylase ligase (birA) 357 51.87 0 380315..381895 - 526 15639349 - TP0358 - hypothetical protein 358 52.52 0 381907..382542 - 211 15639350 - TP0359 - hypothetical protein 359 54.80 0 382753..382929 + 58 15639351 - TP0360 - hypothetical protein 360 57.60 +1 382926..383774 - 282 15639352 - TP0361 - lysophosphatidic acid acyltransferase, putative 361 59.92 +1 383850..384086 + 78 15639353 - TP0362 - ribosomal protein L28 (rpmB) 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.