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Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 186 52.75 0 204641..204949 + 102 15639181 rpsJ TP0188 - 30S ribosomal protein S10 187 54.07 0 204996..205622 + 208 15639182 rplC TP0189 - 50S ribosomal protein L3 188 49.31 0 205636..206286 + 216 15639183 rplD TP0190 - 50S ribosomal protein L4 189 52.28 0 206273..206557 + 94 15639184 rplW TP0191 - 50S ribosomal protein L23 190 56.20 0 206613..207434 + 273 15639185 rplB TP0192 - 50S ribosomal protein L2 191 47.22 -1 207444..207731 + 95 15639186 rpsS TP0193 - 30S ribosomal protein S19 192 52.80 0 207740..208114 + 124 15639187 rplV TP0194 - 50S ribosomal protein L22 193 51.34 0 208098..208841 + 247 15639188 rpsC TP0195 - 30S ribosomal protein S3 194 52.86 0 208845..209264 + 139 15639189 rplP TP0196 - 50S ribosomal protein L16 195 45.21 -1 209279..209497 + 72 15639190 - TP0197 - ribosomal protein L29 (rpmC) 196 52.94 0 209512..209766 + 84 15639191 rpsQ TP0198 - 30S ribosomal protein S17 197 48.51 -1 209779..210147 + 122 15639192 rplN TP0199 - 50S ribosomal protein L14 198 50.64 0 210159..210470 + 103 15639193 rplX TP0200 - 50S ribosomal protein L24 199 46.42 -1 210467..211024 + 185 15639194 rplE TP0201 - 50S ribosomal protein L5 200 53.76 0 211036..211221 + 61 15639195 rpsN TP0202 - 30S ribosomal protein S14 201 49.12 0 211237..211635 + 132 15639196 rpsH TP0203 - 30S ribosomal protein S8 202 51.85 0 211645..212184 + 179 15639197 rplF TP0204 - 50S ribosomal protein L6 203 49.86 0 212193..212555 + 120 15639198 rplR TP0205 - 50S ribosomal protein L18 204 51.83 0 212564..213082 + 172 15639199 rpsE TP0206 - 30S ribosomal protein S5 205 56.99 0 213085..213270 + 61 15640028 rpmD TP0206a - 50S ribosomal protein L30 206 56.71 0 213270..213731 + 153 15639200 rplO TP0207 - 50S ribosomal protein L15 207 49.08 0 213739..215091 + 450 15639201 secY TP0208 - preprotein translocase subunit SecY 208 40.35 -2 215096..215209 + 37 15639202 rpmJ TP0209 - 50S ribosomal protein L36 209 46.99 -1 215225..215590 + 121 15639203 rpsM TP0210 - 30S ribosomal protein S13 210 52.23 0 215608..215988 + 126 15639204 - TP0211 - 30S ribosomal protein S11 211 49.34 0 216003..217058 + 351 15639205 - TP0212 - DNA-directed RNA polymerase subunit alpha 212 52.32 0 217048..217542 + 164 15639206 rplQ TP0213 - 50S ribosomal protein L17 213 57.58 +1 217566..217763 + 65 15639207 - TP0214 - hypothetical protein 214 57.62 +1 217969..218631 + 220 15639208 - TP0215 - grpE protein (grpE) 215 51.57 0 218747..220654 + 635 15639209 dnaK TP0216 - molecular chaperone DnaK 216 54.00 0 220775..222024 + 416 15640026 dnaJ TP0217 - heat shock protein 217 46.39 -1 222201..223670 + 489 15639210 - TP0218 - sigma factor SigB regulation protein, putative 218 41.67 -2 223674..225821 + 715 15639211 - TP0219 - sigma factor SigG regulation protein, putative 219 48.62 0 225850..226176 + 108 15639212 - TP0220 - anti-sigma F factor antagonist (SpoIIAA-1) 220 55.94 0 226177..226959 + 260 15639213 - TP0221 - D,D-carboxypeptidase, putative 221 52.57 0 226969..227415 + 148 15639214 - TP0222 - hypothetical protein 222 53.29 0 227683..228990 + 435 15639215 - TP0223 - hypothetical protein 223 48.57 -1 229027..229131 + 34 15639216 - TP0224 - hypothetical protein 224 51.42 0 229177..229917 + 246 15639217 - TP0225 - leucine-rich repeat-containing protein 225 49.05 0 235069..235755 - 228 15639218 - TP0226 - hypothetical protein 226 52.86 0 235808..236575 - 255 15639219 - TP0227 - cobalt ABC transporter, ATP-binding protein 227 55.64 0 236642..237457 - 271 15639220 - TP0228 - biotin synthase, putative 228 55.52 0 237401..238234 + 277 15639221 - TP0229 - DNA polymerase 229 56.28 0 238239..240212 + 657 15639222 - TP0230 - primosomal protein N (priA) 230 54.99 0 240313..240963 + 216 15639223 - TP0231 - hypothetical protein 231 55.56 0 241063..241179 + 38 15639224 - TP0232 - hypothetical protein 232 45.24 -1 241210..241755 + 181 15639225 - TP0233 - anti-sigma F factor antagonist, putative 233 49.71 0 241990..242160 + 56 15639226 rpmG TP0234 - 50S ribosomal protein L33 234 53.89 0 242310..242489 + 59 15639227 secE TP0235 - preprotein translocase subunit SecE 235 52.87 0 242499..243056 + 185 15639228 - TP0236 - transcription antitermination protein (nusG) 236 54.20 0 243163..243603 + 146 15639229 rplK TP0237 - 50S ribosomal protein L11 237 53.74 0 243600..244280 + 226 15639230 rplA TP0238 - 50S ribosomal protein L1 238 54.70 0 244282..244824 + 180 15639231 rplJ TP0239 - 50S ribosomal protein L10 239 52.05 0 244933..245322 + 129 15639232 rplL TP0240 - 50S ribosomal protein L7/L12 240 49.93 0 245585..249121 + 1178 15639233 rpoB TP0241 - DNA-directed RNA polymerase subunit beta 241 50.60 0 249134..253384 + 1416 15639234 - TP0242 - DNA-directed RNA polymerase subunit beta' 242 54.40 0 253487..253861 + 124 15639235 rpsL TP0243 - 30S ribosomal protein S12 243 54.99 0 253883..254353 + 156 15639236 - TP0244 - 30S ribosomal protein S7 244 52.00 0 254377..257832 + 1151 15639237 - TP0245 - hypothetical protein 245 46.49 -1 257978..259771 + 597 15639238 - TP0246 - hypothetical protein 246 48.23 -1 259822..260895 + 357 15639239 - TP0247 - N-acetylmuramoyl-L-alanine amidase (amiA) 247 56.54 0 260962..261366 + 134 15639240 - TP0248 - hypothetical protein 248 54.42 0 261445..262497 + 350 15639241 - TP0249 - flagellar filament outer layer protein (flaA-1) 249 54.82 0 262548..262775 + 75 15639242 - TP0250 - hypothetical protein 250 55.90 0 262610..262897 + 95 15640029 rpsT TP0250a - 30S ribosomal protein S20 251 54.72 0 262929..263246 + 105 15639243 - TP0251 - DNA-binding protein II 252 54.36 0 263236..264876 + 546 15639244 - TP0252 - apolipoprotein N-acyltransferase, putative 253 51.93 0 264867..265280 + 137 15639245 - TP0253 - hypothetical protein 254 48.97 0 265517..267076 + 519 15639246 rho TP0254 - transcription termination factor Rho 255 49.02 0 267195..267398 + 67 15639247 rpmE TP0255 - 50S ribosomal protein L31 256 47.77 -1 267443..268093 + 216 15639248 - TP0256 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA) 257 48.27 -1 268190..269260 + 356 15639249 glpQ TP0257 - glycerophosphodiester phosphodiesterase 258 52.60 0 269326..270036 - 236 15639250 - TP0258 - hypothetical protein 259 53.76 0 270115..270726 + 203 15639251 - TP0259 - hypothetical protein 260 56.94 0 270857..272203 - 448 15639252 - TP0260 - hypothetical protein 261 54.50 0 272318..273361 + 347 15639253 - TP0261 - catabolite gene activator, putative 262 51.85 0 273339..274013 + 224 15639254 - TP0262 - catabolite gene activator (Crp) 263 57.98 +1 274028..275812 + 594 15639255 - TP0263 - hypothetical protein 264 56.77 0 275817..276473 + 218 15639256 - TP0264 - deoxyribose-phosphate aldolase (deoC) 265 54.97 0 276905..278272 - 455 15639257 - TP0265 - amino acid ABC transporter, permease protein (braC) 266 53.17 0 278323..278448 + 41 15639258 - TP0266 - hypothetical protein 267 51.37 0 283557..283922 + 121 15639259 - TP0267 - hypothetical protein 268 58.26 +1 283919..284572 + 217 15639260 - TP0268 - hypothetical protein 269 50.38 0 284582..286030 + 482 15639261 - TP0269 - hypothetical protein 270 54.84 0 286104..287540 + 478 15639262 - TP0270 - polynucleotide adenylyltransferase (pcnA) 271 53.13 0 287537..288511 - 324 15639263 - TP0271 - chromosome partitioning protein (parB) 272 48.16 -1 288498..289259 - 253 15639264 - TP0272 - SpoOJ regulator (soj) 273 53.54 0 289392..290183 + 263 15639265 - TP0273 - hypothetical protein 274 56.09 0 290221..290721 - 166 15639266 - TP0274 - deoxycytidylate deaminase, putative 275 50.93 0 290810..291559 - 249 15639267 - TP0275 - UDP-N-acetyl-D-mannosamine transferase, putative 276 56.72 0 291538..292422 - 294 15639268 - TP0276 - hypothetical protein 277 50.48 0 292595..293941 - 448 15639269 - TP0277 - carboxyl-terminal protease (CTP) 278 61.24 +1 294069..294197 + 42 15639270 - TP0278 - hypothetical protein 279 55.25 0 294243..296834 + 863 15639271 - TP0279 - bifunctional cytidylate kinase/ribosomal protein S1 280 58.91 +1 296831..296959 + 42 15639272 - TP0280 - hypothetical protein 281 58.14 +1 296976..297104 + 42 15639273 - TP0281 - hypothetical protein 282 59.44 +1 297097..297816 + 239 15639274 - TP0282 - hypothetical protein 283 51.67 0 297994..298473 + 159 15639275 - TP0283 - lipopolysaccharide core biosynthesis protein (kdtB) 284 54.55 0 298578..299237 + 219 15639276 - TP0284 - hypothetical protein 285 48.80 0 299177..300256 + 359 15639277 - TP0285 - hypothetical protein 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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