version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 96 54.79 0 106441..106659 + 72 15639091 - TP0097 - translation initiation factor 1 (infA) 97 60.22 +1 106719..107369 - 216 15639092 - TP0098 - heat-shock protein, putative 98 55.56 0 107373..108128 - 251 15639093 pyrH TP0099 - uridylate kinase 99 54.89 0 108323..108925 + 200 15639094 - TP0100 - thioredoxin, putative 100 55.35 0 108918..109712 + 264 15639095 - TP0101 - cytochrome c biogenesis protein (ccdA) 101 45.09 -1 109750..111723 - 657 15639096 - TP0102 - rep helicase, single-stranded DNA-dependent ATPase (rep) 102 52.74 0 111788..113611 + 607 15639097 - TP0103 - ATP-dependent DNA helicase, putative 103 48.43 -1 113858..115639 + 593 15639098 - TP0104 - 5'-nucleotidase (ushA) 104 44.76 -1 115806..118799 + 997 15639099 - TP0105 - DNA polymerase I (polA) 105 49.18 0 118831..120363 - 510 15639100 - TP0106 - carnitine transporter, putative 106 47.02 -1 120344..121921 - 525 15639101 - TP0107 - licC protein (licC) 107 51.08 0 122275..123660 - 461 15639102 - TP0108 - diphosphate--fructose-6-phosphate 1-phosphotransferase 108 55.29 0 123762..124640 - 292 15639103 - TP0109 - rRNA methylase, putative 109 49.60 0 125181..126914 + 577 15639104 - TP0110 - hypothetical protein 110 47.90 -1 126974..128401 + 475 15639105 - TP0111 - RNA polymerase sigma-54 factor (rpoN) 111 46.86 -1 128398..129750 - 450 15639106 - TP0112 - aminopeptidase C (pepC) 112 46.61 -1 129892..130878 + 328 15639107 - TP0113 - lambda CII stability-governing protein (hflK) 113 49.60 0 130883..131878 + 331 15639108 - TP0114 - lambda CII stability-governing protein (hflC) 114 54.44 0 131903..132712 - 269 15639109 - TP0115 - phosphomethypyrimidine kinase (thiD) 115 45.34 -1 132863..134869 + 668 15639110 - TP0116 - excinuclease ABC subunit B 116 56.26 0 134901..136697 - 598 15639111 - TP0117 - TPR protein C (tprC) 117 55.61 0 136777..138042 - 421 15639112 - TP0118 - hypothetical protein 118 55.15 0 138140..138799 - 219 15639113 - TP0119 - amino acid ABC transporter, permease protein (yaeE) 119 51.98 0 138799..139608 - 269 15639114 - TP0120 - amino acid ABC transporter ATP-binding protein 120 57.21 +1 139738..140805 + 355 15639115 - TP0121 - hypothetical protein 121 53.96 0 141025..142881 - 618 15639116 - TP0122 - phosphoenolpyruvate carboxykinase 122 48.89 0 142987..145557 + 856 15639117 - TP0123 - hypothetical protein 123 52.57 0 145571..146677 + 368 15639118 - TP0124 - translation-associated GTPase 124 56.60 0 146754..147548 + 264 15639119 - TP0125 - exodeoxyribonuclease (exoA) 125 59.02 +1 147612..148487 - 291 15639120 - TP0126 - hypothetical protein 126 55.94 0 148595..149284 + 229 15639121 - TP0127 - hypothetical protein 127 62.64 +2 149473..149820 + 115 15639122 - TP0128 - hypothetical protein 128 59.54 +1 149805..150281 + 158 15639123 - TP0129 - hypothetical protein 129 58.81 +1 150610..151029 - 139 15639124 - TP0130 - hypothetical protein 130 56.26 0 151101..152897 - 598 15639125 - TP0131 - TPR protein D (tprD) 131 50.48 0 152942..153151 - 69 15639126 - TP0132 - hypothetical protein 132 56.77 0 153136..154368 - 410 15639127 - TP0133 - hypothetical protein 133 57.38 +1 154365..155495 - 376 15639128 - TP0134 - hypothetical protein 134 59.13 +1 155447..156388 - 313 15639129 - TP0135 - hypothetical protein 135 60.95 +1 156792..158279 + 495 15639130 - TP0136 - hypothetical protein 136 53.62 0 158258..158395 + 45 15639131 - TP0137 - hypothetical protein 137 49.05 0 158533..159270 - 245 15639132 - TP0138 - hypothetical protein 138 48.05 -1 159278..159970 - 230 15639133 - TP0139 - hypothetical protein 139 47.16 -1 160010..161737 - 575 15639134 - TP0140 - K+ transport protein (ntpJ) 140 55.99 0 161909..162442 + 177 15639135 - TP0141 - methylated-DNA-protein-cysteine S-methyltransferase (dat) 141 51.73 0 162393..163055 - 220 15639136 - TP0142 - thiamine ABC transporter, ATP-binding protein, putative 142 53.20 0 163048..164829 - 593 15639137 - TP0143 - thiamine ABC transporter, permease protein, putative 143 57.74 +1 164787..165794 - 335 15639138 - TP0144 - thiamine ABC transporter, thiamine-binding periplasmic protein, putative 144 53.83 0 165904..167874 + 656 15639139 - TP0145 - long-chain-fatty-acid--CoA ligase 145 44.84 -1 169279..171138 - 619 15639140 - TP0147 - alpha-amylase 1, putative 146 51.30 0 171135..171713 - 192 15639141 - TP0148 - hypothetical protein 147 50.17 0 171707..172300 - 197 15639142 - TP0149 - hypothetical protein 148 49.15 0 172293..172760 - 155 15639143 - TP0150 - hypothetical protein 149 54.51 0 172744..173763 - 339 15639144 - TP0151 - hypothetical protein 150 57.41 +1 173750..175294 - 514 15639145 - TP0152 - nitrogen fixation protein (rnfC) 151 54.88 0 175370..175861 - 163 15639146 - TP0153 - hypothetical protein 152 58.57 +1 176086..177123 + 345 15639147 - TP0154 - hypothetical protein 153 52.33 0 177129..178244 + 371 15639148 - TP0155 - hypothetical protein 154 51.11 0 178285..178689 - 134 15639149 - TP0156 - hypothetical protein 155 50.17 0 178686..179588 - 300 15639150 - TP0157 - hypothetical protein 156 48.76 0 179585..180271 - 228 15639151 - TP0158 - hypothetical protein 157 51.51 0 180275..181303 - 342 15639152 - TP0159 - hypothetical protein 158 55.99 0 181419..183272 - 617 15639153 - TP0160 - prolyl-tRNA synthetase 159 55.91 0 183275..183367 - 30 15639154 - TP0161 - hypothetical protein 160 58.59 +1 183384..184436 - 350 15639155 ruvB TP0162 - Holliday junction DNA helicase B 161 53.51 0 184611..185537 + 308 15639156 - TP0163 - ABC transporter, periplasmic binding protein (troA) 162 53.43 0 185685..186485 + 266 15639157 - TP0164 - ABC transporter, ATP-binding protein (troB) 163 51.62 0 186457..187353 + 298 15639158 - TP0165 - ABC transporter, permease protein (troC) 164 52.26 0 187357..188460 + 367 15639159 - TP0166 - ABC transporter, permease protein (troD) 165 50.87 0 188470..188931 + 153 15639160 - TP0167 - cation-activated repressor protein (troR) 166 51.46 0 189011..189766 + 251 15639161 - TP0168 - phosphoglycerate mutase (pgm) 167 55.56 0 189990..190088 + 32 15639162 - TP0169 - hypothetical protein 168 54.81 0 190085..190894 + 269 15639163 - TP0170 - pfs protein (pfs) 169 52.68 0 190994..191422 + 142 15639164 - TP0171 - lipoprotein, 15 kDa (tpp15) 170 54.73 0 191570..192097 - 175 15639165 - TP0172 - hypothetical protein 171 50.88 0 192132..192815 - 227 15639166 - TP0173 - hypothetical protein 172 44.25 -2 192784..193626 - 280 15639167 - TP0174 - hypothetical protein 173 43.60 -2 193376..194008 - 210 15639168 - TP0175 - hypothetical protein 174 45.69 -1 194039..194305 - 88 15639169 - TP0176 - hypothetical protein 175 48.74 0 194302..195612 - 436 15639170 - TP0177 - hypothetical protein 176 57.82 +1 195706..196632 - 308 15639171 - TP0178 - hypothetical protein 177 60.83 +1 196632..198515 - 627 15639172 - TP0179 - hypothetical protein 178 59.12 +1 198457..198615 - 52 15639173 - TP0180 - hypothetical protein 179 56.08 0 198608..199051 + 147 15639174 - TP0181 - hypothetical protein 180 60.26 +1 198891..199670 + 259 15639175 - TP0182 - hypothetical protein 181 56.62 0 199673..200518 - 281 15639176 - TP0183 - hypothetical protein 182 55.27 0 200523..200987 - 154 161579587 smpB TP0184 - SsrA-binding protein 183 53.39 0 201075..201782 + 235 15639178 - TP0185 - signal peptidase I (sip) 184 54.48 0 201837..203018 + 393 15639179 - TP0186 - oxygen-independent coproporphyrinogen III oxidase, putative 185 50.59 0 203382..204569 + 395 161579586 - TP0187 - elongation factor Tu 186 52.75 0 204641..204949 + 102 15639181 rpsJ TP0188 - 30S ribosomal protein S10 187 54.07 0 204996..205622 + 208 15639182 rplC TP0189 - 50S ribosomal protein L3 188 49.31 0 205636..206286 + 216 15639183 rplD TP0190 - 50S ribosomal protein L4 189 52.28 0 206273..206557 + 94 15639184 rplW TP0191 - 50S ribosomal protein L23 190 56.20 0 206613..207434 + 273 15639185 rplB TP0192 - 50S ribosomal protein L2 191 47.22 -1 207444..207731 + 95 15639186 rpsS TP0193 - 30S ribosomal protein S19 192 52.80 0 207740..208114 + 124 15639187 rplV TP0194 - 50S ribosomal protein L22 193 51.34 0 208098..208841 + 247 15639188 rpsC TP0195 - 30S ribosomal protein S3 194 52.86 0 208845..209264 + 139 15639189 rplP TP0196 - 50S ribosomal protein L16 195 45.21 -1 209279..209497 + 72 15639190 - TP0197 - ribosomal protein L29 (rpmC) 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.