version 1.0
Treponema pallidum subsp. pallidum str. Nichols, complete genome - 1..1138011 1036 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 60 51.33 0 69749..70048 - 99 15639055 rpsR TP0061 - 30S ribosomal protein S18 61 53.86 0 70165..70695 - 176 15639056 - TP0062 - single-strand DNA binding protein (ssb) 62 53.55 0 70704..70985 - 93 15639057 rpsF TP0063 - 30S ribosomal protein S6 63 49.65 0 71127..71702 + 191 15639058 - TP0064 - hypothetical protein 64 49.83 0 71776..72363 + 195 15639059 - TP0065 - hypothetical protein 65 52.06 0 72347..72661 + 104 15639060 - TP0066 - hypothetical protein 66 50.34 0 72649..73830 + 393 15639061 - TP0067 - hypothetical protein 67 53.18 0 74011..75033 + 340 15639062 - TP0068 - hypothetical protein 68 52.54 0 75089..75619 - 176 15639063 - TP0069 - hypothetical protein 69 52.97 0 75469..75855 - 128 15639064 - TP0070 - hypothetical protein 70 49.87 0 75906..78542 - 878 15639065 - TP0071 - ATP-dependent Clp protease subunit B (clpB) 71 48.72 0 78746..79018 + 90 15639066 - TP0072 - hypothetical protein 72 52.46 0 79088..80629 - 513 15639067 - TP0073 - hypothetical protein 73 55.11 0 80934..82343 + 469 15639068 - TP0074 - sugar ABC transporter, periplasmic binding protein (y4oP) 74 49.38 0 82462..83352 + 296 15639069 - TP0075 - sugar ABC transporter, permease protein (y4oQ) 75 48.42 -1 83392..84213 + 273 15639070 - TP0076 - sugar ABC transporter, permease protein (y4oR) 76 50.28 0 84254..85870 + 538 15639071 - TP0077 - capsular polysaccharide biosynthesis protein (cap5D) 77 50.04 0 85875..87113 + 412 15639072 - TP0078 - spore coat polysaccharide biosynthesis protein (spsC) 78 50.11 0 87041..89263 + 740 15639073 - TP0079 - hypothetical protein 79 42.95 -2 89260..89727 + 155 15639074 - TP0080 - quinoline 2-oxidoreductase 80 46.64 -1 89734..90582 + 282 15639075 - TP0081 - hypothetical protein 81 52.69 0 90629..92431 - 600 15639076 - TP0082 - formate hydrogenlyase transcriptional activator (fhlA) 82 54.25 0 93177..94457 + 426 15639077 - TP0083 - hypothetical protein 83 53.42 0 94437..94670 - 77 15639078 - TP0084 - hypothetical protein 84 49.89 0 94784..95230 - 148 15639079 - TP0085 - PTS system, nitrogen regulatory IIA component (ptsN-1) 85 53.65 0 95311..96255 + 314 15639080 - TP0086 - hypothetical protein 86 57.41 +1 96258..96797 - 179 15639081 - TP0087 - hypothetical protein 87 48.62 0 96781..97395 - 204 15639082 - TP0088 - hypothetical protein 88 45.39 -1 97425..98660 - 411 15639083 - TP0089 - cyclic nucleotide binding protein 89 57.75 +1 98743..99807 - 354 15639084 - TP0090 - UDP-N-acetylmuramate dehydrogenase (murB) 90 54.51 0 99989..101551 + 520 15639085 - TP0091 - cysteinyl-tRNA synthetase (cysS) 91 54.19 0 101622..102110 + 162 15639086 - TP0092 - RNA polymerase sigma-24 factor (rpoE) 92 55.25 0 102094..102741 + 215 15639087 - TP0093 - hypothetical protein 93 51.43 0 102879..103889 + 336 15639088 - TP0094 - phosphate acetyltransferase (pta) 94 56.65 0 103889..105835 + 648 15639089 - TP0095 - hypothetical protein 95 53.44 0 105909..106271 - 120 15639090 - TP0096 - dnaK suppressor, putative 96 54.79 0 106441..106659 + 72 15639091 - TP0097 - translation initiation factor 1 (infA) 97 60.22 +1 106719..107369 - 216 15639092 - TP0098 - heat-shock protein, putative 98 55.56 0 107373..108128 - 251 15639093 pyrH TP0099 - uridylate kinase 99 54.89 0 108323..108925 + 200 15639094 - TP0100 - thioredoxin, putative 100 55.35 0 108918..109712 + 264 15639095 - TP0101 - cytochrome c biogenesis protein (ccdA) 101 45.09 -1 109750..111723 - 657 15639096 - TP0102 - rep helicase, single-stranded DNA-dependent ATPase (rep) 102 52.74 0 111788..113611 + 607 15639097 - TP0103 - ATP-dependent DNA helicase, putative 103 48.43 -1 113858..115639 + 593 15639098 - TP0104 - 5'-nucleotidase (ushA) 104 44.76 -1 115806..118799 + 997 15639099 - TP0105 - DNA polymerase I (polA) 105 49.18 0 118831..120363 - 510 15639100 - TP0106 - carnitine transporter, putative 106 47.02 -1 120344..121921 - 525 15639101 - TP0107 - licC protein (licC) 107 51.08 0 122275..123660 - 461 15639102 - TP0108 - diphosphate--fructose-6-phosphate 1-phosphotransferase 108 55.29 0 123762..124640 - 292 15639103 - TP0109 - rRNA methylase, putative 109 49.60 0 125181..126914 + 577 15639104 - TP0110 - hypothetical protein 110 47.90 -1 126974..128401 + 475 15639105 - TP0111 - RNA polymerase sigma-54 factor (rpoN) 111 46.86 -1 128398..129750 - 450 15639106 - TP0112 - aminopeptidase C (pepC) 112 46.61 -1 129892..130878 + 328 15639107 - TP0113 - lambda CII stability-governing protein (hflK) 113 49.60 0 130883..131878 + 331 15639108 - TP0114 - lambda CII stability-governing protein (hflC) 114 54.44 0 131903..132712 - 269 15639109 - TP0115 - phosphomethypyrimidine kinase (thiD) 115 45.34 -1 132863..134869 + 668 15639110 - TP0116 - excinuclease ABC subunit B 116 56.26 0 134901..136697 - 598 15639111 - TP0117 - TPR protein C (tprC) 117 55.61 0 136777..138042 - 421 15639112 - TP0118 - hypothetical protein 118 55.15 0 138140..138799 - 219 15639113 - TP0119 - amino acid ABC transporter, permease protein (yaeE) 119 51.98 0 138799..139608 - 269 15639114 - TP0120 - amino acid ABC transporter ATP-binding protein 120 57.21 +1 139738..140805 + 355 15639115 - TP0121 - hypothetical protein 121 53.96 0 141025..142881 - 618 15639116 - TP0122 - phosphoenolpyruvate carboxykinase 122 48.89 0 142987..145557 + 856 15639117 - TP0123 - hypothetical protein 123 52.57 0 145571..146677 + 368 15639118 - TP0124 - translation-associated GTPase 124 56.60 0 146754..147548 + 264 15639119 - TP0125 - exodeoxyribonuclease (exoA) 125 59.02 +1 147612..148487 - 291 15639120 - TP0126 - hypothetical protein 126 55.94 0 148595..149284 + 229 15639121 - TP0127 - hypothetical protein 127 62.64 +2 149473..149820 + 115 15639122 - TP0128 - hypothetical protein 128 59.54 +1 149805..150281 + 158 15639123 - TP0129 - hypothetical protein 129 58.81 +1 150610..151029 - 139 15639124 - TP0130 - hypothetical protein 130 56.26 0 151101..152897 - 598 15639125 - TP0131 - TPR protein D (tprD) 131 50.48 0 152942..153151 - 69 15639126 - TP0132 - hypothetical protein 132 56.77 0 153136..154368 - 410 15639127 - TP0133 - hypothetical protein 133 57.38 +1 154365..155495 - 376 15639128 - TP0134 - hypothetical protein 134 59.13 +1 155447..156388 - 313 15639129 - TP0135 - hypothetical protein 135 60.95 +1 156792..158279 + 495 15639130 - TP0136 - hypothetical protein 136 53.62 0 158258..158395 + 45 15639131 - TP0137 - hypothetical protein 137 49.05 0 158533..159270 - 245 15639132 - TP0138 - hypothetical protein 138 48.05 -1 159278..159970 - 230 15639133 - TP0139 - hypothetical protein 139 47.16 -1 160010..161737 - 575 15639134 - TP0140 - K+ transport protein (ntpJ) 140 55.99 0 161909..162442 + 177 15639135 - TP0141 - methylated-DNA-protein-cysteine S-methyltransferase (dat) 141 51.73 0 162393..163055 - 220 15639136 - TP0142 - thiamine ABC transporter, ATP-binding protein, putative 142 53.20 0 163048..164829 - 593 15639137 - TP0143 - thiamine ABC transporter, permease protein, putative 143 57.74 +1 164787..165794 - 335 15639138 - TP0144 - thiamine ABC transporter, thiamine-binding periplasmic protein, putative 144 53.83 0 165904..167874 + 656 15639139 - TP0145 - long-chain-fatty-acid--CoA ligase 145 44.84 -1 169279..171138 - 619 15639140 - TP0147 - alpha-amylase 1, putative 146 51.30 0 171135..171713 - 192 15639141 - TP0148 - hypothetical protein 147 50.17 0 171707..172300 - 197 15639142 - TP0149 - hypothetical protein 148 49.15 0 172293..172760 - 155 15639143 - TP0150 - hypothetical protein 149 54.51 0 172744..173763 - 339 15639144 - TP0151 - hypothetical protein 150 57.41 +1 173750..175294 - 514 15639145 - TP0152 - nitrogen fixation protein (rnfC) 151 54.88 0 175370..175861 - 163 15639146 - TP0153 - hypothetical protein 152 58.57 +1 176086..177123 + 345 15639147 - TP0154 - hypothetical protein 153 52.33 0 177129..178244 + 371 15639148 - TP0155 - hypothetical protein 154 51.11 0 178285..178689 - 134 15639149 - TP0156 - hypothetical protein 155 50.17 0 178686..179588 - 300 15639150 - TP0157 - hypothetical protein 156 48.76 0 179585..180271 - 228 15639151 - TP0158 - hypothetical protein 157 51.51 0 180275..181303 - 342 15639152 - TP0159 - hypothetical protein 158 55.99 0 181419..183272 - 617 15639153 - TP0160 - prolyl-tRNA synthetase 159 55.91 0 183275..183367 - 30 15639154 - TP0161 - hypothetical protein 52.88 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.