IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
864	 38.30	0	894747..894887	-	46	42526383	-	TDE0871	-	hypothetical protein
865	 46.02	+1	894981..896225	+	414	42526384	recA	TDE0872	-	recA protein
866	 37.84	0	896283..897059	+	258	42526385	-	TDE0873	-	hypothetical protein
867	 45.93	+1	897079..897594	+	171	42526386	-	TDE0874	-	transcriptional regulator, putative
868	 40.85	0	897629..898333	+	234	42526387	rluB	TDE0875	-	ribosomal large subunit pseudouridine synthase B
869	 26.88	-1	898429..898614	-	61	42526388	-	TDE0876	-	hypothetical protein
870	 35.23	0	898729..899679	+	316	42526389	-	TDE0877	-	hypothetical protein
871	 31.82	0	899792..899989	+	65	42526390	-	TDE0878	-	hypothetical protein
872	 33.33	0	899986..900117	+	43	42526391	-	TDE0879	-	hypothetical protein
873	 44.78	+1	900114..901196	+	360	42526392	cobT	TDE0880	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
874	 39.84	0	901307..901552	+	81	42526393	rpsP	TDE0881	-	ribosomal protein S16
875	 44.87	+1	901589..901822	+	77	42526394	-	TDE0882	-	hypothetical protein
876	 41.85	0	901825..902364	+	179	42526395	rimM	TDE0883	-	16S rRNA processing protein RimM
877	 43.58	+1	902361..903092	+	243	42526396	trmD	TDE0884	-	tRNA (guanine-N(1)-)-methyltransferase
878	 40.83	0	903085..903444	+	119	42526397	rplS	TDE0885	-	50S ribosomal protein L19
879	 39.83	0	903481..904434	+	317	42526398	-	TDE0886	-	hypothetical protein
880	 28.57	-1	904423..904842	-	139	42526399	-	TDE0887	-	PilT domain-containing protein
881	 32.51	0	904823..905065	-	80	42526400	-	TDE0888	-	hypothetical protein
882	 33.18	0	905230..905874	+	214	42526401	-	TDE0889	-	hypothetical protein
883	 35.11	0	906030..907664	+	544	42526402	-	TDE0890	-	hypothetical protein
884	 36.59	0	907732..908652	+	306	42526403	-	TDE0891	-	transcriptional regulator, putative
885	 32.07	0	908711..909499	+	262	42526404	-	TDE0892	-	ABC transporter, permease protein
886	 31.69	0	909480..910511	+	343	42526405	-	TDE0893	-	ABC transporter, ATP-binding protein
887	 33.46	0	910508..911299	+	263	42526406	-	TDE0894	-	hypothetical protein
888	 38.08	0	911317..912264	-	315	42526407	-	TDE0895	-	AraC family transcriptional regulator
889	 38.09	0	912466..914253	+	595	42526408	-	TDE0896	-	ABC transporter, ATP-binding/permease protein
890	 38.77	0	914253..915998	+	581	42526409	-	TDE0897	-	ABC transporter, ATP-binding/permease protein
891	 36.50	0	916018..916617	+	199	42526410	-	TDE0898	-	hypothetical protein
892	 37.66	0	916621..917337	+	238	42526411	-	TDE0899	-	ABC transporter, permease protein, putative
893	 36.00	0	917328..918752	+	474	42526412	-	TDE0900	-	ABC transporter, ATP-binding protein
894	 30.92	-1	918949..919404	-	151	42526413	-	TDE0901	-	hypothetical protein
895	 40.50	0	919470..920222	-	250	42526414	-	TDE0902	-	hypothetical protein
896	 42.63	0	920368..922356	+	662	42526415	pcrA	TDE0903	-	ATP-dependent DNA helicase PcrA
897	 37.98	0	922368..922496	-	42	42526416	-	TDE0904	-	hypothetical protein
898	 40.73	0	922572..923288	+	238	42526417	-	TDE0905	-	hypothetical protein
899	 42.48	0	923304..924779	+	491	42526418	-	TDE0906	-	ABC transporter, ATP-binding protein
900	 43.89	+1	924784..925380	+	198	42526419	-	TDE0907	-	hypothetical protein
901	 45.49	+1	925394..927145	+	583	42526420	-	TDE0908	-	ABC transporter, ATP-binding/permease protein
902	 37.06	0	927306..928913	+	535	42526421	tdeIIIM	TDE0909	-	type II DNA modification methyltransferase M.TdeIII
903	 27.20	-1	928914..930626	+	570	42526422	-	TDE0910	-	hypothetical protein
904	 37.71	0	930613..931389	+	258	42526423	tdeIIIR	TDE0911	-	type II restriction endonuclease TdeIII
905	 47.47	+1	931490..931588	+	32	42526424	-	TDE0912	-	hypothetical protein
906	 28.11	-1	931786..933144	-	452	42526425	-	TDE0913	-	hypothetical protein
907	 34.92	0	933160..933285	-	41	42526426	-	TDE0914	-	hypothetical protein
908	 35.63	0	933237..933410	-	57	42526427	-	TDE0915	-	hypothetical protein
909	 43.76	+1	933499..935244	+	581	42526428	-	TDE0916	-	ABC transporter, ATP-binding/permease protein
910	 31.43	-1	935313..935417	-	34	42526429	-	TDE0917	-	hypothetical protein
911	 24.46	-2	935417..939043	+	1208	42526430	-	TDE0918	-	hypothetical protein
912	 33.33	0	939087..939185	+	32	42526431	-	TDE0919	-	hypothetical protein
913	 36.41	0	939190..940131	-	313	42526432	-	TDE0920	-	AraC family transcriptional regulator
914	 35.63	0	940208..941947	-	579	42526433	-	TDE0921	-	ABC transporter, ATP-binding/permease protein
915	 35.51	0	941937..943730	-	597	42526434	-	TDE0922	-	ABC transporter, ATP-binding/permease protein
916	 48.01	+1	944010..945821	-	603	42526435	-	TDE0923	-	ABC transporter, ATP-binding/permease protein
917	 48.41	+1	945841..947724	-	627	42526436	-	TDE0924	-	ABC transporter, ATP-binding/permease protein
918	 41.54	0	947987..949192	+	401	42526437	pepT	TDE0925	-	peptidase T
919	 37.75	0	949282..950097	-	271	42526438	-	TDE0926	-	phosphonate ABC transporter, permease protein, putative
920	 34.94	0	950094..950963	-	289	42526439	-	TDE0927	-	phosphonate ABC transporter, permease protein, putative
921	 38.65	0	950960..951730	-	256	42526440	-	TDE0928	-	phosphonate ABC transporter, ATP-binding protein, putative
922	 43.07	+1	951809..952825	-	338	42526441	argF	TDE0929	-	ornithine carbamoyltransferase
923	 43.14	+1	952933..953778	-	281	42526442	-	TDE0930	-	hypothetical protein
924	 36.15	0	953851..955197	-	448	42526443	-	TDE0931	-	MATE efflux family protein
925	 37.96	0	955224..958034	-	936	42526444	-	TDE0932	-	adenylate/guanylate cyclase catalytic domain-containing protein
926	 42.80	0	958203..959396	+	397	42526445	ackA	TDE0933	-	acetate kinase
927	 37.83	0	959485..959751	-	88	42526446	groES	TDE0934	-	co-chaperonin GroES
928	 33.33	0	959751..959843	-	30	42526447	-	TDE0935	-	hypothetical protein
929	 28.70	-1	959962..960069	-	35	42526448	-	TDE0936	-	hypothetical protein
930	 37.98	0	960091..960951	+	286	42526449	-	TDE0937	-	RNA polymerase sigma-70 factor family protein
931	 44.14	+1	961053..962264	-	403	42526450	-	TDE0938	-	hypothetical protein
932	 34.51	0	962339..963274	+	311	42526451	-	TDE0939	-	putative lipoprotein
933	 33.33	0	963276..963695	+	139	42526452	-	TDE0940	-	hypothetical protein
934	 38.33	0	963713..964192	-	159	42526453	-	TDE0941	-	NLP/P60 family protein
935	 41.90	0	964272..965999	+	575	42526454	-	TDE0942	-	long-chain-fatty-acid--CoA ligase, putative
936	 39.52	0	966123..966332	+	69	42526455	-	TDE0943	-	hypothetical protein
937	 45.71	+1	966387..967097	+	236	42526456	-	TDE0944	-	hypothetical protein
938	 50.58	+2	967268..968380	+	370	42526457	-	TDE0945	-	hypothetical protein
939	 44.59	+1	968352..968795	+	147	42526458	-	TDE0946	-	hypothetical protein
940	 45.26	+1	968804..970882	-	692	42526459	-	TDE0947	-	translation elongation factor G, putative
941	 35.61	0	971049..971927	-	292	42526460	-	TDE0948	-	hypothetical protein
942	 46.01	+1	972150..973451	+	433	42526461	eno	TDE0949	-	enolase
943	 31.29	-1	974256..974402	-	48	42526462	-	TDE0950	-	hypothetical protein
944	 38.97	0	974392..975438	+	348	42526463	-	TDE0951	-	putative lipoprotein
945	 35.79	0	975462..977006	+	514	42526464	-	TDE0952	-	ABC transporter, ATP-binding protein
946	 37.75	0	977003..978067	+	354	42526465	-	TDE0953	-	branched-chain amino acid ABC transporter, permease protein
947	 39.67	0	978064..978900	+	278	42526466	-	TDE0954	-	branched-chain amino acid ABC transporter, permease protein
948	 37.60	0	978982..979590	+	202	42526467	-	TDE0955	-	LemA family protein
949	 42.14	0	979596..980390	+	264	42526468	-	TDE0956	-	hypothetical protein
950	 35.22	0	980392..981135	+	247	42526469	-	TDE0957	-	glycerophosphoryl diester phosphodiesterase family protein
951	 37.39	0	981180..982091	+	303	42526470	-	TDE0958	-	patatin family protein
952	 36.47	0	982075..982425	+	116	42526471	-	TDE0959	-	hypothetical protein
953	 37.46	0	982516..983655	+	379	42526472	-	TDE0960	-	neuB family protein
954	 38.41	0	983659..984072	+	137	42526473	-	TDE0961	-	DnaJ domain-containing protein
955	 28.89	-1	984123..986033	+	636	42526474	-	TDE0962	-	hypothetical protein
956	 36.78	0	986035..987222	+	395	42526475	dinB	TDE0963	-	DNA polymerase IV
957	 30.91	-1	987219..990638	+	1139	42526476	-	TDE0964	-	hypothetical protein
958	 40.60	0	990660..991457	-	265	42526477	-	TDE0965	-	hypothetical protein
959	 35.89	0	991490..992311	-	273	42526478	-	TDE0966	-	TatD family hydrolase
960	 36.55	0	992341..992589	+	82	42526479	-	TDE0967	-	hypothetical protein
961	 41.13	0	992653..993216	-	187	42526480	efp	TDE0968	-	translation elongation factor P
962	 34.39	0	993400..994635	+	411	42526481	-	TDE0969	-	hypothetical protein
963	 32.44	0	994909..995244	+	111	42526482	-	TDE0970	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.