IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
824	 34.83	0	852185..852385	-	66	42526343	-	TDE0831	-	hypothetical protein
825	 45.19	+1	852689..853135	+	148	42526344	-	TDE0832	-	hypothetical protein
826	 47.95	+1	853132..854157	+	341	42526345	-	TDE0833	-	putative lipoprotein
827	 42.41	0	854381..854953	-	190	42526346	nqrE	TDE0834	-	Na(+)-translocating NADH-quinone reductase, E subunit
828	 39.85	0	854957..855616	-	219	42526347	nqrD	TDE0835	-	SoxR-reducing system protein RsxE
829	 43.51	+1	855617..856186	-	189	42526348	nqrC	TDE0836	-	Na(+)-translocating NADH-quinone reductase, C subunit
830	 41.99	0	856183..857199	-	338	42526349	nqrB	TDE0837	-	Na(+)-translocating NADH-quinone reductase, B subunit
831	 44.21	+1	857199..858641	-	480	42526350	nqrA	TDE0838	-	Na(+)-translocating NADH-quinone reductase, A subunit
832	 32.20	0	858724..859431	-	235	42526351	-	TDE0839	-	rhodanese-like domain-containing protein
833	 31.84	0	859509..860984	-	491	42526352	-	TDE0840	-	hypothetical protein
834	 33.79	0	861026..861688	-	220	42526353	-	TDE0841	-	hypothetical protein
835	 42.31	0	861855..863903	+	682	42526354	cfpA	TDE0842	-	cytoplasmic filament protein A
836	 38.79	0	863990..865015	+	341	42526355	-	TDE0843	-	hypothetical protein
837	 41.56	0	865026..867833	+	935	42526356	-	TDE0844	-	pyruvate phosphate dikinase
838	 40.59	0	867935..868609	+	224	42526357	-	TDE0845	-	hypothetical protein
839	 37.68	0	868763..870925	+	720	42526358	-	TDE0846	-	hypothetical protein
840	 41.19	0	871034..871402	+	122	42526359	-	TDE0847	-	hypothetical protein
841	 43.33	+1	871409..871618	+	69	42526360	-	TDE0848	-	hypothetical protein
842	 36.41	0	871739..872389	+	216	42526361	-	TDE0849	-	hypothetical protein
843	 40.07	0	872470..874635	-	721	42526362	-	TDE0850	-	methyl-accepting chemotaxis protein
844	 39.36	0	874839..875087	-	82	42526363	-	TDE0851	-	hypothetical protein
845	 42.89	0	875159..875587	+	142	42526364	rplM	TDE0852	-	50S ribosomal protein L13
846	 44.53	+1	875613..875987	+	124	42526365	rpsI	TDE0853	-	30S ribosomal protein S9
847	 40.51	0	875953..876621	+	222	42526366	recX	TDE0854	-	recombination regulator RecX
848	 37.37	0	876676..877245	+	189	42526367	-	TDE0855	-	DNA-binding response regulator
849	 40.91	0	877251..878438	+	395	42526368	-	TDE0856	-	L-fuculose phosphate aldolase, putative
850	 34.41	0	878453..879658	+	401	42526369	-	TDE0857	-	putative lipoprotein
851	 34.38	0	879658..880230	+	190	42526370	-	TDE0858	-	hypothetical protein
852	 41.75	0	880240..881166	+	308	42526371	-	TDE0859	-	hypothetical protein
853	 41.19	0	881163..881900	+	245	42526372	rsuA	TDE0860	-	ribosomal small subunit pseudouridine synthase A
854	 43.49	+1	881968..883188	-	406	42526373	tyrS	TDE0861	-	tyrosyl-tRNA synthetase
855	 35.32	0	883332..884186	+	284	42526374	-	TDE0862	-	hypothetical protein
856	 40.64	0	884666..885349	+	227	42526375	-	TDE0863	-	MgtC family protein
857	 38.78	0	885384..887237	+	617	42526376	-	TDE0864	-	phosphohexose mutase family protein
858	 40.97	0	887267..887659	+	130	42526377	-	TDE0865	-	hypothetical protein
859	 34.51	0	887754..888689	+	311	42526378	-	TDE0866	-	hypothetical protein
860	 35.98	0	888682..890460	+	592	42526379	-	TDE0867	-	hypothetical protein
861	 41.07	0	890525..891532	+	335	42526380	-	TDE0868	-	oxidoreductase, FAD/FMN-binding
862	 36.39	0	891610..892722	+	370	42526381	-	TDE0869	-	hypothetical protein
863	 39.18	0	892838..894736	+	632	42526382	-	TDE0870	-	phosphatase/nucleotidase
864	 38.30	0	894747..894887	-	46	42526383	-	TDE0871	-	hypothetical protein
865	 46.02	+1	894981..896225	+	414	42526384	recA	TDE0872	-	recA protein
866	 37.84	0	896283..897059	+	258	42526385	-	TDE0873	-	hypothetical protein
867	 45.93	+1	897079..897594	+	171	42526386	-	TDE0874	-	transcriptional regulator, putative
868	 40.85	0	897629..898333	+	234	42526387	rluB	TDE0875	-	ribosomal large subunit pseudouridine synthase B
869	 26.88	-1	898429..898614	-	61	42526388	-	TDE0876	-	hypothetical protein
870	 35.23	0	898729..899679	+	316	42526389	-	TDE0877	-	hypothetical protein
871	 31.82	0	899792..899989	+	65	42526390	-	TDE0878	-	hypothetical protein
872	 33.33	0	899986..900117	+	43	42526391	-	TDE0879	-	hypothetical protein
873	 44.78	+1	900114..901196	+	360	42526392	cobT	TDE0880	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
874	 39.84	0	901307..901552	+	81	42526393	rpsP	TDE0881	-	ribosomal protein S16
875	 44.87	+1	901589..901822	+	77	42526394	-	TDE0882	-	hypothetical protein
876	 41.85	0	901825..902364	+	179	42526395	rimM	TDE0883	-	16S rRNA processing protein RimM
877	 43.58	+1	902361..903092	+	243	42526396	trmD	TDE0884	-	tRNA (guanine-N(1)-)-methyltransferase
878	 40.83	0	903085..903444	+	119	42526397	rplS	TDE0885	-	50S ribosomal protein L19
879	 39.83	0	903481..904434	+	317	42526398	-	TDE0886	-	hypothetical protein
880	 28.57	-1	904423..904842	-	139	42526399	-	TDE0887	-	PilT domain-containing protein
881	 32.51	0	904823..905065	-	80	42526400	-	TDE0888	-	hypothetical protein
882	 33.18	0	905230..905874	+	214	42526401	-	TDE0889	-	hypothetical protein
883	 35.11	0	906030..907664	+	544	42526402	-	TDE0890	-	hypothetical protein
884	 36.59	0	907732..908652	+	306	42526403	-	TDE0891	-	transcriptional regulator, putative
885	 32.07	0	908711..909499	+	262	42526404	-	TDE0892	-	ABC transporter, permease protein
886	 31.69	0	909480..910511	+	343	42526405	-	TDE0893	-	ABC transporter, ATP-binding protein
887	 33.46	0	910508..911299	+	263	42526406	-	TDE0894	-	hypothetical protein
888	 38.08	0	911317..912264	-	315	42526407	-	TDE0895	-	AraC family transcriptional regulator
889	 38.09	0	912466..914253	+	595	42526408	-	TDE0896	-	ABC transporter, ATP-binding/permease protein
890	 38.77	0	914253..915998	+	581	42526409	-	TDE0897	-	ABC transporter, ATP-binding/permease protein
891	 36.50	0	916018..916617	+	199	42526410	-	TDE0898	-	hypothetical protein
892	 37.66	0	916621..917337	+	238	42526411	-	TDE0899	-	ABC transporter, permease protein, putative
893	 36.00	0	917328..918752	+	474	42526412	-	TDE0900	-	ABC transporter, ATP-binding protein
894	 30.92	-1	918949..919404	-	151	42526413	-	TDE0901	-	hypothetical protein
895	 40.50	0	919470..920222	-	250	42526414	-	TDE0902	-	hypothetical protein
896	 42.63	0	920368..922356	+	662	42526415	pcrA	TDE0903	-	ATP-dependent DNA helicase PcrA
897	 37.98	0	922368..922496	-	42	42526416	-	TDE0904	-	hypothetical protein
898	 40.73	0	922572..923288	+	238	42526417	-	TDE0905	-	hypothetical protein
899	 42.48	0	923304..924779	+	491	42526418	-	TDE0906	-	ABC transporter, ATP-binding protein
900	 43.89	+1	924784..925380	+	198	42526419	-	TDE0907	-	hypothetical protein
901	 45.49	+1	925394..927145	+	583	42526420	-	TDE0908	-	ABC transporter, ATP-binding/permease protein
902	 37.06	0	927306..928913	+	535	42526421	tdeIIIM	TDE0909	-	type II DNA modification methyltransferase M.TdeIII
903	 27.20	-1	928914..930626	+	570	42526422	-	TDE0910	-	hypothetical protein
904	 37.71	0	930613..931389	+	258	42526423	tdeIIIR	TDE0911	-	type II restriction endonuclease TdeIII
905	 47.47	+1	931490..931588	+	32	42526424	-	TDE0912	-	hypothetical protein
906	 28.11	-1	931786..933144	-	452	42526425	-	TDE0913	-	hypothetical protein
907	 34.92	0	933160..933285	-	41	42526426	-	TDE0914	-	hypothetical protein
908	 35.63	0	933237..933410	-	57	42526427	-	TDE0915	-	hypothetical protein
909	 43.76	+1	933499..935244	+	581	42526428	-	TDE0916	-	ABC transporter, ATP-binding/permease protein
910	 31.43	-1	935313..935417	-	34	42526429	-	TDE0917	-	hypothetical protein
911	 24.46	-2	935417..939043	+	1208	42526430	-	TDE0918	-	hypothetical protein
912	 33.33	0	939087..939185	+	32	42526431	-	TDE0919	-	hypothetical protein
913	 36.41	0	939190..940131	-	313	42526432	-	TDE0920	-	AraC family transcriptional regulator
914	 35.63	0	940208..941947	-	579	42526433	-	TDE0921	-	ABC transporter, ATP-binding/permease protein
915	 35.51	0	941937..943730	-	597	42526434	-	TDE0922	-	ABC transporter, ATP-binding/permease protein
916	 48.01	+1	944010..945821	-	603	42526435	-	TDE0923	-	ABC transporter, ATP-binding/permease protein
917	 48.41	+1	945841..947724	-	627	42526436	-	TDE0924	-	ABC transporter, ATP-binding/permease protein
918	 41.54	0	947987..949192	+	401	42526437	pepT	TDE0925	-	peptidase T
919	 37.75	0	949282..950097	-	271	42526438	-	TDE0926	-	phosphonate ABC transporter, permease protein, putative
920	 34.94	0	950094..950963	-	289	42526439	-	TDE0927	-	phosphonate ABC transporter, permease protein, putative
921	 38.65	0	950960..951730	-	256	42526440	-	TDE0928	-	phosphonate ABC transporter, ATP-binding protein, putative
922	 43.07	+1	951809..952825	-	338	42526441	argF	TDE0929	-	ornithine carbamoyltransferase
923	 43.14	+1	952933..953778	-	281	42526442	-	TDE0930	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.