IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
775	 41.85	0	813110..813649	+	179	42526294	rplF	TDE0782	-	50S ribosomal protein L6
776	 42.70	0	813660..814022	+	120	42526295	rplR	TDE0783	-	50S ribosomal protein L18
777	 44.64	+1	814031..814552	+	173	42526296	rpsE	TDE0784	-	30S ribosomal protein S5
778	 38.17	0	814557..814742	+	61	42526297	rpmD	TDE0785	-	50S ribosomal protein L30
779	 41.50	0	814742..815194	+	150	42526298	rplO	TDE0786	-	50S ribosomal protein L15
780	 41.46	0	815208..816524	+	438	42526299	secY	TDE0787	-	preprotein translocase subunit SecY
781	 33.33	0	816572..816685	+	37	42526300	rpmJ	TDE0788	-	50S ribosomal protein L36
782	 43.72	+1	816702..817067	+	121	42526301	rpsM	TDE0789	-	30S ribosomal protein S13
783	 45.14	+1	817091..817471	+	126	42526302	rpsK	TDE0790	-	30S ribosomal protein S11
784	 39.30	0	817482..818537	+	351	42526303	rpoA	TDE0791	-	DNA-directed RNA polymerase subunit alpha
785	 40.00	0	818527..819066	+	179	42526304	rplQ	TDE0792	-	50S ribosomal protein L17
786	 45.37	+1	819050..819265	+	71	42526305	-	TDE0793	-	hypothetical protein
787	 37.74	0	819314..819676	-	120	42526306	-	TDE0794	-	hypothetical protein
788	 27.13	-1	819678..820064	-	128	42526307	-	TDE0795	-	hypothetical protein
789	 42.10	0	820197..821006	+	269	42526308	-	TDE0796	-	histidinol phosphate phosphatase HisJ family protein
790	 44.21	+1	820999..821283	+	94	42526309	-	TDE0797	-	acylphosphatase
791	 41.53	0	821319..822647	-	442	42526310	-	TDE0798	-	transporter, putative
792	 34.87	0	822749..823528	+	259	42526311	-	TDE0799	-	glycerophosphoryl diester phosphodiesterase, putative
793	 27.82	-1	823544..823978	-	144	42526312	-	TDE0800	-	acetyltransferase
794	 33.56	0	824015..824449	-	144	42526313	-	TDE0801	-	hypothetical protein
795	 38.21	0	824562..825197	-	211	42526314	-	TDE0802	-	hypothetical protein
796	 36.58	0	825457..826935	+	492	42526315	-	TDE0803	-	hypothetical protein
797	 36.26	0	826962..828089	-	375	42526316	-	TDE0804	-	hypothetical protein
798	 29.27	-1	828311..828433	+	40	42526317	-	TDE0805	-	hypothetical protein
799	 32.42	0	828430..828978	-	182	42526318	-	TDE0806	-	hypothetical protein
800	 24.73	-2	829013..829198	-	61	42526319	-	TDE0807	-	hypothetical protein
801	 33.76	0	829270..829740	-	156	42526320	-	TDE0808	-	acetyltransferase
802	 34.29	0	829730..830875	-	381	42526321	-	TDE0809	-	hypothetical protein
803	 32.14	0	830902..831069	-	55	42526322	-	TDE0810	-	hypothetical protein
804	 37.72	0	831071..832438	-	455	42526323	-	TDE0811	-	efflux protein, putative
805	 34.01	0	832584..834197	+	537	42526324	-	TDE0812	-	ABC transporter, ATP-binding/permease protein
806	 34.72	0	834181..835767	+	528	42526325	-	TDE0813	-	ABC transporter, ATP-binding protein/permease
807	 36.26	0	835799..835969	-	56	42526326	-	TDE0814	-	transcriptional regulator, putative
808	 33.69	0	836067..837455	-	462	42526327	-	TDE0815	-	hypothetical protein
809	 35.34	0	837461..838654	-	397	42526328	-	TDE0816	-	M20/M25/M40 family peptidase
810	 33.06	0	838940..840019	+	359	42526329	-	TDE0817	-	histidine kinase-related ATPase, putative
811	 42.39	0	840016..841737	-	573	42526330	-	TDE0818	-	ABC transporter, ATP-binding/permease protein
812	 40.18	0	841739..843475	-	578	42526331	-	TDE0819	-	ABC transporter, ATP-binding/permease protein
813	 40.45	0	843804..844463	-	219	42526332	-	TDE0820	-	TetR family transcriptional regulator
814	 34.41	0	844518..844610	+	30	42526333	-	TDE0821	-	hypothetical protein
815	 28.46	-1	844607..844729	+	40	42526334	-	TDE0822	-	hypothetical protein
816	 44.68	+1	844881..845312	+	143	42526335	-	TDE0823	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative
817	 40.40	0	845316..845966	-	216	42526336	-	TDE0824	-	putative lipoprotein
818	 41.59	0	846102..847700	+	532	42526337	-	TDE0825	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative
819	 37.85	0	847744..847920	+	58	42526338	-	TDE0826	-	hypothetical protein
820	 41.81	0	847967..848143	-	58	42526339	-	TDE0827	-	hypothetical protein
821	 47.01	+1	848373..850259	-	628	42526340	gidA	TDE0828	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
822	 42.85	0	850275..851567	-	430	42526341	-	TDE0829	-	putative aminopeptidase 2
823	 30.22	-1	851699..852115	-	138	42526342	-	TDE0830	-	hypothetical protein
824	 34.83	0	852185..852385	-	66	42526343	-	TDE0831	-	hypothetical protein
825	 45.19	+1	852689..853135	+	148	42526344	-	TDE0832	-	hypothetical protein
826	 47.95	+1	853132..854157	+	341	42526345	-	TDE0833	-	putative lipoprotein
827	 42.41	0	854381..854953	-	190	42526346	nqrE	TDE0834	-	Na(+)-translocating NADH-quinone reductase, E subunit
828	 39.85	0	854957..855616	-	219	42526347	nqrD	TDE0835	-	SoxR-reducing system protein RsxE
829	 43.51	+1	855617..856186	-	189	42526348	nqrC	TDE0836	-	Na(+)-translocating NADH-quinone reductase, C subunit
830	 41.99	0	856183..857199	-	338	42526349	nqrB	TDE0837	-	Na(+)-translocating NADH-quinone reductase, B subunit
831	 44.21	+1	857199..858641	-	480	42526350	nqrA	TDE0838	-	Na(+)-translocating NADH-quinone reductase, A subunit
832	 32.20	0	858724..859431	-	235	42526351	-	TDE0839	-	rhodanese-like domain-containing protein
833	 31.84	0	859509..860984	-	491	42526352	-	TDE0840	-	hypothetical protein
834	 33.79	0	861026..861688	-	220	42526353	-	TDE0841	-	hypothetical protein
835	 42.31	0	861855..863903	+	682	42526354	cfpA	TDE0842	-	cytoplasmic filament protein A
836	 38.79	0	863990..865015	+	341	42526355	-	TDE0843	-	hypothetical protein
837	 41.56	0	865026..867833	+	935	42526356	-	TDE0844	-	pyruvate phosphate dikinase
838	 40.59	0	867935..868609	+	224	42526357	-	TDE0845	-	hypothetical protein
839	 37.68	0	868763..870925	+	720	42526358	-	TDE0846	-	hypothetical protein
840	 41.19	0	871034..871402	+	122	42526359	-	TDE0847	-	hypothetical protein
841	 43.33	+1	871409..871618	+	69	42526360	-	TDE0848	-	hypothetical protein
842	 36.41	0	871739..872389	+	216	42526361	-	TDE0849	-	hypothetical protein
843	 40.07	0	872470..874635	-	721	42526362	-	TDE0850	-	methyl-accepting chemotaxis protein
844	 39.36	0	874839..875087	-	82	42526363	-	TDE0851	-	hypothetical protein
845	 42.89	0	875159..875587	+	142	42526364	rplM	TDE0852	-	50S ribosomal protein L13
846	 44.53	+1	875613..875987	+	124	42526365	rpsI	TDE0853	-	30S ribosomal protein S9
847	 40.51	0	875953..876621	+	222	42526366	recX	TDE0854	-	recombination regulator RecX
848	 37.37	0	876676..877245	+	189	42526367	-	TDE0855	-	DNA-binding response regulator
849	 40.91	0	877251..878438	+	395	42526368	-	TDE0856	-	L-fuculose phosphate aldolase, putative
850	 34.41	0	878453..879658	+	401	42526369	-	TDE0857	-	putative lipoprotein
851	 34.38	0	879658..880230	+	190	42526370	-	TDE0858	-	hypothetical protein
852	 41.75	0	880240..881166	+	308	42526371	-	TDE0859	-	hypothetical protein
853	 41.19	0	881163..881900	+	245	42526372	rsuA	TDE0860	-	ribosomal small subunit pseudouridine synthase A
854	 43.49	+1	881968..883188	-	406	42526373	tyrS	TDE0861	-	tyrosyl-tRNA synthetase
855	 35.32	0	883332..884186	+	284	42526374	-	TDE0862	-	hypothetical protein
856	 40.64	0	884666..885349	+	227	42526375	-	TDE0863	-	MgtC family protein
857	 38.78	0	885384..887237	+	617	42526376	-	TDE0864	-	phosphohexose mutase family protein
858	 40.97	0	887267..887659	+	130	42526377	-	TDE0865	-	hypothetical protein
859	 34.51	0	887754..888689	+	311	42526378	-	TDE0866	-	hypothetical protein
860	 35.98	0	888682..890460	+	592	42526379	-	TDE0867	-	hypothetical protein
861	 41.07	0	890525..891532	+	335	42526380	-	TDE0868	-	oxidoreductase, FAD/FMN-binding
862	 36.39	0	891610..892722	+	370	42526381	-	TDE0869	-	hypothetical protein
863	 39.18	0	892838..894736	+	632	42526382	-	TDE0870	-	phosphatase/nucleotidase
864	 38.30	0	894747..894887	-	46	42526383	-	TDE0871	-	hypothetical protein
865	 46.02	+1	894981..896225	+	414	42526384	recA	TDE0872	-	recA protein
866	 37.84	0	896283..897059	+	258	42526385	-	TDE0873	-	hypothetical protein
867	 45.93	+1	897079..897594	+	171	42526386	-	TDE0874	-	transcriptional regulator, putative
868	 40.85	0	897629..898333	+	234	42526387	rluB	TDE0875	-	ribosomal large subunit pseudouridine synthase B
869	 26.88	-1	898429..898614	-	61	42526388	-	TDE0876	-	hypothetical protein
870	 35.23	0	898729..899679	+	316	42526389	-	TDE0877	-	hypothetical protein
871	 31.82	0	899792..899989	+	65	42526390	-	TDE0878	-	hypothetical protein
872	 33.33	0	899986..900117	+	43	42526391	-	TDE0879	-	hypothetical protein
873	 44.78	+1	900114..901196	+	360	42526392	cobT	TDE0880	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
874	 39.84	0	901307..901552	+	81	42526393	rpsP	TDE0881	-	ribosomal protein S16
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.