IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
726	 40.94	0	770781..771437	-	218	42526245	-	TDE0731	-	hypothetical protein
727	 36.58	0	771498..772820	-	440	42526246	-	TDE0732	-	hypothetical protein
728	 36.23	0	772840..774186	-	448	42526247	-	TDE0733	-	hypothetical protein
729	 44.57	+1	774836..775093	-	85	42526248	-	TDE0735	-	hypothetical protein
730	 45.02	+1	775090..775320	-	76	42526249	-	TDE0736	-	hypothetical protein
731	 31.09	-1	775498..775764	-	88	42526250	-	TDE0737	-	hypothetical protein
732	 35.25	0	775764..776024	-	86	42526251	-	TDE0738	-	hypothetical protein
733	 29.56	-1	775930..776088	+	52	42526252	-	TDE0739	-	hypothetical protein
734	 50.72	+2	776127..776264	+	45	42526253	-	TDE0740	-	hypothetical protein
735	 51.98	+2	776275..778248	-	657	42526254	-	TDE0741	-	hypothetical protein
736	 52.15	+2	778540..778725	-	61	42526255	-	TDE0742	-	hypothetical protein
737	 45.49	+1	778858..779811	+	317	42526256	trxB	TDE0743	-	thioredoxin reductase
738	 40.57	0	779984..780301	+	105	42526257	trxA	TDE0744	-	thioredoxin
739	 47.05	+1	780427..780900	+	157	42526258	grdA	TDE0745	-	glycine/sarcosine/betaine reductase complex protein A
740	 33.25	0	781021..782199	-	392	42526259	-	TDE0746	-	iron compound ABC transporter, ATP-binding protein, putative
741	 34.59	0	782186..783217	-	343	42526260	-	TDE0747	-	iron compound ABC transporter, permease protein, putative
742	 34.97	0	783221..784378	-	385	42526261	-	TDE0748	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
743	 34.97	0	784563..788297	-	1244	42526262	-	TDE0749	-	cobalamin biosynthesis protein CobN, putative
744	 33.33	0	788294..790225	-	643	42526263	-	TDE0750	-	magnesium chelatase subunit D/I family protein
745	 36.45	0	790212..791141	-	309	42526264	-	TDE0751	-	magnesium chelatase subunit D/I family protein
746	 33.61	0	791493..793322	+	609	42526265	-	TDE0752	-	hypothetical protein
747	 34.74	0	793340..793978	+	212	42526266	-	TDE0753	-	hypothetical protein
748	 35.31	0	793962..794567	+	201	42526267	-	TDE0754	-	hypothetical protein
749	 44.31	+1	794623..796098	-	491	42526268	-	TDE0755	-	Na+/H+ antiporter family protein
750	 37.80	0	796188..796949	-	253	42526269	-	TDE0756	-	iron compound ABC transporter, ATP-binding protein, putative
751	 41.57	0	796949..798016	-	355	42526270	-	TDE0757	-	iron compound ABC transporter, permease protein, putative
752	 37.85	0	798018..799013	-	331	42526271	-	TDE0758	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
753	 34.14	0	799218..799589	-	123	42526272	-	TDE0759	-	hypothetical protein
754	 39.36	0	799576..800073	+	165	42526273	-	TDE0760	-	hypothetical protein
755	 44.84	+1	800109..802028	+	639	42526274	prcA	TDE0761	-	protease complex-associated polypeptide
756	 34.29	0	804324..804428	-	34	42526275	-	TDE0763	-	hypothetical protein
757	 38.00	0	804468..804617	-	49	42526276	-	TDE0764	-	hypothetical protein
758	 44.28	+1	804872..806059	+	395	42526277	tuf	TDE0765	-	elongation factor Tu
759	 42.39	0	806124..806432	+	102	42526278	rpsJ	TDE0766	-	30S ribosomal protein S10
760	 43.06	+1	806495..807121	+	208	42526279	rplC	TDE0767	-	50S ribosomal protein L3
761	 40.57	0	807136..807771	+	211	42526280	rplD	TDE0768	-	50S ribosomal protein L4
762	 40.35	0	807774..808058	+	94	42526281	rplW	TDE0769	-	50S ribosomal protein L23
763	 46.45	+1	808092..808922	+	276	42526282	rplB	TDE0770	-	50S ribosomal protein L2
764	 39.78	0	808935..809213	+	92	42526283	rpsS	TDE0771	-	30S ribosomal protein S19
765	 43.42	+1	809224..809580	+	118	42526284	rplV	TDE0772	-	50S ribosomal protein L22
766	 44.44	+1	809583..810302	+	239	42526285	rpsC	TDE0773	-	30S ribosomal protein S3
767	 45.00	+1	810305..810724	+	139	42526286	rplP	TDE0774	-	50S ribosomal protein L16
768	 36.67	0	810737..810946	+	69	42526287	rpmC	TDE0775	-	50S ribosomal protein L29
769	 40.66	0	810958..811230	+	90	42526288	rpsQ	TDE0776	-	30S ribosomal protein S17
770	 42.01	0	811249..811617	+	122	42526289	rplN	TDE0777	-	50S ribosomal protein L14
771	 42.86	0	811627..811941	+	104	42526290	rplX	TDE0778	-	50S ribosomal protein L24
772	 42.39	0	811941..812492	+	183	42526291	rplE	TDE0779	-	50S ribosomal protein L5
773	 44.62	+1	812504..812689	+	61	42526292	rpsN	TDE0780	-	30S ribosomal protein S14
774	 40.85	0	812701..813099	+	132	42526293	rpsH	TDE0781	-	30S ribosomal protein S8
775	 41.85	0	813110..813649	+	179	42526294	rplF	TDE0782	-	50S ribosomal protein L6
776	 42.70	0	813660..814022	+	120	42526295	rplR	TDE0783	-	50S ribosomal protein L18
777	 44.64	+1	814031..814552	+	173	42526296	rpsE	TDE0784	-	30S ribosomal protein S5
778	 38.17	0	814557..814742	+	61	42526297	rpmD	TDE0785	-	50S ribosomal protein L30
779	 41.50	0	814742..815194	+	150	42526298	rplO	TDE0786	-	50S ribosomal protein L15
780	 41.46	0	815208..816524	+	438	42526299	secY	TDE0787	-	preprotein translocase subunit SecY
781	 33.33	0	816572..816685	+	37	42526300	rpmJ	TDE0788	-	50S ribosomal protein L36
782	 43.72	+1	816702..817067	+	121	42526301	rpsM	TDE0789	-	30S ribosomal protein S13
783	 45.14	+1	817091..817471	+	126	42526302	rpsK	TDE0790	-	30S ribosomal protein S11
784	 39.30	0	817482..818537	+	351	42526303	rpoA	TDE0791	-	DNA-directed RNA polymerase subunit alpha
785	 40.00	0	818527..819066	+	179	42526304	rplQ	TDE0792	-	50S ribosomal protein L17
786	 45.37	+1	819050..819265	+	71	42526305	-	TDE0793	-	hypothetical protein
787	 37.74	0	819314..819676	-	120	42526306	-	TDE0794	-	hypothetical protein
788	 27.13	-1	819678..820064	-	128	42526307	-	TDE0795	-	hypothetical protein
789	 42.10	0	820197..821006	+	269	42526308	-	TDE0796	-	histidinol phosphate phosphatase HisJ family protein
790	 44.21	+1	820999..821283	+	94	42526309	-	TDE0797	-	acylphosphatase
791	 41.53	0	821319..822647	-	442	42526310	-	TDE0798	-	transporter, putative
792	 34.87	0	822749..823528	+	259	42526311	-	TDE0799	-	glycerophosphoryl diester phosphodiesterase, putative
793	 27.82	-1	823544..823978	-	144	42526312	-	TDE0800	-	acetyltransferase
794	 33.56	0	824015..824449	-	144	42526313	-	TDE0801	-	hypothetical protein
795	 38.21	0	824562..825197	-	211	42526314	-	TDE0802	-	hypothetical protein
796	 36.58	0	825457..826935	+	492	42526315	-	TDE0803	-	hypothetical protein
797	 36.26	0	826962..828089	-	375	42526316	-	TDE0804	-	hypothetical protein
798	 29.27	-1	828311..828433	+	40	42526317	-	TDE0805	-	hypothetical protein
799	 32.42	0	828430..828978	-	182	42526318	-	TDE0806	-	hypothetical protein
800	 24.73	-2	829013..829198	-	61	42526319	-	TDE0807	-	hypothetical protein
801	 33.76	0	829270..829740	-	156	42526320	-	TDE0808	-	acetyltransferase
802	 34.29	0	829730..830875	-	381	42526321	-	TDE0809	-	hypothetical protein
803	 32.14	0	830902..831069	-	55	42526322	-	TDE0810	-	hypothetical protein
804	 37.72	0	831071..832438	-	455	42526323	-	TDE0811	-	efflux protein, putative
805	 34.01	0	832584..834197	+	537	42526324	-	TDE0812	-	ABC transporter, ATP-binding/permease protein
806	 34.72	0	834181..835767	+	528	42526325	-	TDE0813	-	ABC transporter, ATP-binding protein/permease
807	 36.26	0	835799..835969	-	56	42526326	-	TDE0814	-	transcriptional regulator, putative
808	 33.69	0	836067..837455	-	462	42526327	-	TDE0815	-	hypothetical protein
809	 35.34	0	837461..838654	-	397	42526328	-	TDE0816	-	M20/M25/M40 family peptidase
810	 33.06	0	838940..840019	+	359	42526329	-	TDE0817	-	histidine kinase-related ATPase, putative
811	 42.39	0	840016..841737	-	573	42526330	-	TDE0818	-	ABC transporter, ATP-binding/permease protein
812	 40.18	0	841739..843475	-	578	42526331	-	TDE0819	-	ABC transporter, ATP-binding/permease protein
813	 40.45	0	843804..844463	-	219	42526332	-	TDE0820	-	TetR family transcriptional regulator
814	 34.41	0	844518..844610	+	30	42526333	-	TDE0821	-	hypothetical protein
815	 28.46	-1	844607..844729	+	40	42526334	-	TDE0822	-	hypothetical protein
816	 44.68	+1	844881..845312	+	143	42526335	-	TDE0823	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative
817	 40.40	0	845316..845966	-	216	42526336	-	TDE0824	-	putative lipoprotein
818	 41.59	0	846102..847700	+	532	42526337	-	TDE0825	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative
819	 37.85	0	847744..847920	+	58	42526338	-	TDE0826	-	hypothetical protein
820	 41.81	0	847967..848143	-	58	42526339	-	TDE0827	-	hypothetical protein
821	 47.01	+1	848373..850259	-	628	42526340	gidA	TDE0828	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
822	 42.85	0	850275..851567	-	430	42526341	-	TDE0829	-	putative aminopeptidase 2
823	 30.22	-1	851699..852115	-	138	42526342	-	TDE0830	-	hypothetical protein
824	 34.83	0	852185..852385	-	66	42526343	-	TDE0831	-	hypothetical protein
825	 45.19	+1	852689..853135	+	148	42526344	-	TDE0832	-	hypothetical protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.