IslandPathversion 1.0

IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.25 STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
678	 40.10	0	720755..721168	-	137	42526197	yajC	TDE0682	-	preprotein translocase, YajC subunit
679	 30.77	-1	721277..721393	-	38	42526198	-	TDE0683	-	hypothetical protein
680	 41.48	0	721913..722710	-	265	42526199	-	TDE0685	-	short chain dehydrogenase/reductase family oxidoreductase
681	 39.96	0	722867..723817	+	316	42526200	purC	TDE0686	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
682	 41.46	0	723814..724293	+	159	42526201	-	TDE0687	-	phosphoribosylaminoimidazole carboxylase, PurE protein
683	 33.33	0	724312..725817	+	501	42526202	-	TDE0688	-	hypothetical protein
684	 34.83	0	725830..727032	+	400	42526203	mtnK	TDE0689	-	methylthioribose kinase
685	 39.42	0	727038..728138	+	366	42526204	trmU	TDE0690	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
686	 33.02	0	728202..729788	+	528	42526205	-	TDE0691	-	ABC transporter, ATP-binding/permease protein
687	 34.11	0	729852..729980	+	42	42526206	-	TDE0692	-	hypothetical protein
688	 43.21	+1	730082..730891	+	269	42526207	thiD	TDE0693	-	phosphomethylpyrimidine kinase
689	 38.16	0	731130..732062	+	310	42526208	-	TDE0694	-	ABC transporter, ATP-binding protein
690	 31.63	0	732062..733117	+	351	42526209	-	TDE0695	-	hypothetical protein
691	 29.39	-1	733104..734270	+	388	42526210	-	TDE0696	-	hypothetical protein
692	 35.29	0	734310..734462	-	50	42526211	-	TDE0697	-	hypothetical protein
693	 31.40	-1	734712..735125	-	137	42526212	-	TDE0698	-	PilT domain-containing protein
694	 31.62	0	735109..735342	-	77	42526213	-	TDE0699	-	hypothetical protein
695	 35.77	0	735421..736488	-	355	42526214	-	TDE0700	-	hypothetical protein
696	 39.23	0	736609..737337	-	242	42526215	-	TDE0701	-	hypothetical protein
697	 39.81	0	737334..738059	-	241	42526216	-	TDE0702	-	ABC transporter, ATP-binding protein
698	 39.56	0	738056..738280	-	74	42526217	-	TDE0703	-	AbrB family transcriptional regulator
699	 42.05	0	738519..739436	-	305	42526218	-	TDE0704	-	SPFH domain-containing protein/band 7 family protein
700	 42.15	0	739429..740358	-	309	42526219	-	TDE0705	-	SPFH domain-containing protein/band 7 family protein
701	 31.99	0	740560..741672	+	370	42526220	-	TDE0706	-	adenine-specific DNA modification methyltransferase
702	 37.22	0	741685..744000	+	771	42526221	-	TDE0707	-	hypothetical protein
703	 41.28	0	744040..744555	+	171	42526222	-	TDE0708	-	nitroreductase family protein
704	 38.16	0	744571..745524	-	317	42526223	msrA	TDE0709	-	bifunctional methionine sulfoxide reductase A/B protein
705	 22.44	-2	745572..745727	+	51	42526224	-	TDE0710	-	hypothetical protein
706	 40.45	0	745780..746271	-	163	42526225	-	TDE0711	-	hypothetical protein
707	 36.14	0	746271..747053	-	260	42526226	-	TDE0712	-	hypothetical protein
708	 31.63	0	747249..747776	+	175	42526227	-	TDE0713	-	NusG family transcription antitermination protein
709	 40.39	0	747773..749260	+	495	42526228	-	TDE0714	-	capsular polysaccharide biosynthesis protein
710	 30.06	-1	749267..750610	+	447	42526229	-	TDE0715	-	hypothetical protein
711	 29.15	-1	750968..751804	+	278	42526230	-	TDE0716	-	CAAX amino terminal protease family protein
712	 32.95	0	751919..752440	+	173	42526231	-	TDE0717	-	hypothetical protein
713	 32.84	0	753355..753558	+	67	42526232	-	TDE0718	-	hypothetical protein
714	 35.33	0	753602..755755	+	717	42526233	-	TDE0719	-	bacteriocin ABC transporter, ATP-binding/permease protein, putative
715	 29.05	-1	755752..756894	+	380	42526234	-	TDE0720	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
716	 25.18	-2	756891..758276	+	461	42526235	-	TDE0721	-	hypothetical protein
717	 30.41	-1	758659..759924	+	421	42526236	-	TDE0722	-	putative lipoprotein
718	 33.33	0	760444..761721	+	425	42526237	-	TDE0723	-	hypothetical protein
719	 28.66	-1	761993..763297	+	434	42526238	-	TDE0724	-	hypothetical protein
720	 39.88	0	763605..764780	+	391	42526239	-	TDE0725	-	exopolysaccharide biosynthesis protein
721	 34.87	0	764784..766871	+	695	42526240	-	TDE0726	-	aldehyde oxidase and xanthine dehydrogenase family protein
722	 33.12	0	766861..767340	+	159	42526241	-	TDE0727	-	iron-sulfur cluster-binding protein
723	 32.03	0	767346..768191	+	281	42526242	-	TDE0728	-	FAD-binding protein, putative
724	 35.30	0	768198..769214	-	338	42526243	-	TDE0729	-	hypothetical protein
725	 32.47	0	769286..770677	-	463	42526244	-	TDE0730	-	hypothetical protein
726	 40.94	0	770781..771437	-	218	42526245	-	TDE0731	-	hypothetical protein
727	 36.58	0	771498..772820	-	440	42526246	-	TDE0732	-	hypothetical protein
728	 36.23	0	772840..774186	-	448	42526247	-	TDE0733	-	hypothetical protein
729	 44.57	+1	774836..775093	-	85	42526248	-	TDE0735	-	hypothetical protein
730	 45.02	+1	775090..775320	-	76	42526249	-	TDE0736	-	hypothetical protein
731	 31.09	-1	775498..775764	-	88	42526250	-	TDE0737	-	hypothetical protein
732	 35.25	0	775764..776024	-	86	42526251	-	TDE0738	-	hypothetical protein
733	 29.56	-1	775930..776088	+	52	42526252	-	TDE0739	-	hypothetical protein
734	 50.72	+2	776127..776264	+	45	42526253	-	TDE0740	-	hypothetical protein
735	 51.98	+2	776275..778248	-	657	42526254	-	TDE0741	-	hypothetical protein
736	 52.15	+2	778540..778725	-	61	42526255	-	TDE0742	-	hypothetical protein
737	 45.49	+1	778858..779811	+	317	42526256	trxB	TDE0743	-	thioredoxin reductase
738	 40.57	0	779984..780301	+	105	42526257	trxA	TDE0744	-	thioredoxin
739	 47.05	+1	780427..780900	+	157	42526258	grdA	TDE0745	-	glycine/sarcosine/betaine reductase complex protein A
740	 33.25	0	781021..782199	-	392	42526259	-	TDE0746	-	iron compound ABC transporter, ATP-binding protein, putative
741	 34.59	0	782186..783217	-	343	42526260	-	TDE0747	-	iron compound ABC transporter, permease protein, putative
742	 34.97	0	783221..784378	-	385	42526261	-	TDE0748	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
743	 34.97	0	784563..788297	-	1244	42526262	-	TDE0749	-	cobalamin biosynthesis protein CobN, putative
744	 33.33	0	788294..790225	-	643	42526263	-	TDE0750	-	magnesium chelatase subunit D/I family protein
745	 36.45	0	790212..791141	-	309	42526264	-	TDE0751	-	magnesium chelatase subunit D/I family protein
746	 33.61	0	791493..793322	+	609	42526265	-	TDE0752	-	hypothetical protein
747	 34.74	0	793340..793978	+	212	42526266	-	TDE0753	-	hypothetical protein
748	 35.31	0	793962..794567	+	201	42526267	-	TDE0754	-	hypothetical protein
749	 44.31	+1	794623..796098	-	491	42526268	-	TDE0755	-	Na+/H+ antiporter family protein
750	 37.80	0	796188..796949	-	253	42526269	-	TDE0756	-	iron compound ABC transporter, ATP-binding protein, putative
751	 41.57	0	796949..798016	-	355	42526270	-	TDE0757	-	iron compound ABC transporter, permease protein, putative
752	 37.85	0	798018..799013	-	331	42526271	-	TDE0758	-	iron compound ABC transporter, periplasmic iron compound-binding protein, putative
753	 34.14	0	799218..799589	-	123	42526272	-	TDE0759	-	hypothetical protein
754	 39.36	0	799576..800073	+	165	42526273	-	TDE0760	-	hypothetical protein
755	 44.84	+1	800109..802028	+	639	42526274	prcA	TDE0761	-	protease complex-associated polypeptide
756	 34.29	0	804324..804428	-	34	42526275	-	TDE0763	-	hypothetical protein
757	 38.00	0	804468..804617	-	49	42526276	-	TDE0764	-	hypothetical protein
758	 44.28	+1	804872..806059	+	395	42526277	tuf	TDE0765	-	elongation factor Tu
759	 42.39	0	806124..806432	+	102	42526278	rpsJ	TDE0766	-	30S ribosomal protein S10
760	 43.06	+1	806495..807121	+	208	42526279	rplC	TDE0767	-	50S ribosomal protein L3
761	 40.57	0	807136..807771	+	211	42526280	rplD	TDE0768	-	50S ribosomal protein L4
762	 40.35	0	807774..808058	+	94	42526281	rplW	TDE0769	-	50S ribosomal protein L23
763	 46.45	+1	808092..808922	+	276	42526282	rplB	TDE0770	-	50S ribosomal protein L2
764	 39.78	0	808935..809213	+	92	42526283	rpsS	TDE0771	-	30S ribosomal protein S19
765	 43.42	+1	809224..809580	+	118	42526284	rplV	TDE0772	-	50S ribosomal protein L22
766	 44.44	+1	809583..810302	+	239	42526285	rpsC	TDE0773	-	30S ribosomal protein S3
767	 45.00	+1	810305..810724	+	139	42526286	rplP	TDE0774	-	50S ribosomal protein L16
768	 36.67	0	810737..810946	+	69	42526287	rpmC	TDE0775	-	50S ribosomal protein L29
769	 40.66	0	810958..811230	+	90	42526288	rpsQ	TDE0776	-	30S ribosomal protein S17
770	 42.01	0	811249..811617	+	122	42526289	rplN	TDE0777	-	50S ribosomal protein L14
771	 42.86	0	811627..811941	+	104	42526290	rplX	TDE0778	-	50S ribosomal protein L24
772	 42.39	0	811941..812492	+	183	42526291	rplE	TDE0779	-	50S ribosomal protein L5
773	 44.62	+1	812504..812689	+	61	42526292	rpsN	TDE0780	-	30S ribosomal protein S14
774	 40.85	0	812701..813099	+	132	42526293	rpsH	TDE0781	-	30S ribosomal protein S8
775	 41.85	0	813110..813649	+	179	42526294	rplF	TDE0782	-	50S ribosomal protein L6
776	 42.70	0	813660..814022	+	120	42526295	rplR	TDE0783	-	50S ribosomal protein L18
777	 44.64	+1	814031..814552	+	173	42526296	rpsE	TDE0784	-	30S ribosomal protein S5
37.25	MEAN

5.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.