IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
623	 39.87	0	658230..659744	+	504	42526142	-	TDE0626	-	hypothetical protein
624	 44.22	+1	659985..660728	+	247	42526143	grpE	TDE0627	-	co-chaperone protein GrpE
625	 44.41	+1	660749..662689	+	646	42526144	dnaK	TDE0628	-	molecular chaperone DnaK
626	 43.40	+1	662727..663908	+	393	42526145	dnaJ	TDE0629	-	chaperone protein DnaJ
627	 36.09	0	663980..665431	+	483	42526146	-	TDE0630	-	sigma factor regulatory protein, putative
628	 32.20	0	665435..667561	+	708	42526147	-	TDE0631	-	sigma factor regulatory protein, putative
629	 34.26	0	667571..667894	+	107	42526148	-	TDE0632	-	anti-anti-sigma factor
630	 31.09	-1	667918..668718	+	266	42526149	-	TDE0633	-	D-alanyl-D-alanine carboxypeptidase, putative
631	 36.30	0	668715..669659	-	314	42526150	-	TDE0634	-	cation efflux family protein
632	 29.93	-1	669757..670638	+	293	42526151	-	TDE0635	-	hypothetical protein
633	 40.14	0	670622..671590	-	322	42526152	-	TDE0636	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
634	 39.64	0	671583..672581	-	332	42526153	-	TDE0637	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
635	 37.69	0	672578..673540	-	320	42526154	-	TDE0638	-	oligopeptide/dipeptide ABC transporter, permease protein
636	 35.99	0	673543..674484	-	313	42526155	-	TDE0639	-	oligopeptide/dipeptide ABC transporter, permease protein
637	 35.53	0	674621..676855	-	744	42526156	-	TDE0640	-	methyl-accepting chemotaxis protein
638	 46.21	+1	677092..678372	-	426	42526157	murA	TDE0641	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
639	 37.16	0	678550..679254	-	234	42526158	-	TDE0642	-	hypothetical protein
640	 40.69	0	679306..679917	-	203	42526159	pth	TDE0643	-	peptidyl-tRNA hydrolase
641	 39.70	0	679929..680666	-	245	42526160	-	TDE0644	-	ABC transporter, ATP-binding protein
642	 35.84	0	680659..681375	-	238	42526161	-	TDE0645	-	hypothetical protein
643	 31.57	0	681332..681955	-	207	42526162	-	TDE0646	-	hypothetical protein
644	 34.93	0	682084..682899	+	271	42526163	cheR	TDE0647	-	chemotaxis protein methyltransferase
645	 44.33	+1	682940..684058	+	372	42526164	cheB	TDE0648	-	protein-glutamate methylesterase
646	 30.61	-1	684124..684453	-	109	42526165	-	TDE0649	-	hypothetical protein
647	 44.06	+1	684837..685871	+	344	42526166	-	TDE0650	-	hypothetical protein
648	 40.82	0	688317..689051	+	244	42526167	-	TDE0652	-	hypothetical protein
649	 39.29	0	689063..689734	+	223	42526168	-	TDE0653	-	hypothetical protein
650	 42.80	0	689746..690918	+	390	42526169	-	TDE0654	-	M20/M25/M40 family peptidase
651	 35.34	0	691061..691759	+	232	42526170	-	TDE0655	-	response regulator
652	 30.45	-1	691737..692810	+	357	42526171	-	TDE0656	-	sensor histidine kinase, putative
653	 38.19	0	692905..693666	+	253	42526172	-	TDE0657	-	ABC transporter, ATP-binding protein
654	 31.57	0	693694..695739	+	681	42526173	-	TDE0658	-	ABC transporter, permease protein
655	 37.43	0	695780..696292	-	170	42526174	-	TDE0659	-	hypothetical protein
656	 40.29	0	696369..697274	-	301	42526175	-	TDE0660	-	transcriptional regulator, putative
657	 28.33	-1	697336..697575	-	79	42526176	-	TDE0661	-	hypothetical protein
658	 32.58	0	697662..697925	-	87	42526177	-	TDE0662	-	hypothetical protein
659	 31.01	-1	697930..698187	-	85	42526178	-	TDE0663	-	hypothetical protein
660	 37.59	0	698520..699788	+	422	42526179	-	TDE0664	-	OmpA family protein
661	 44.90	+1	699882..703442	-	1186	42526180	-	TDE0665	-	pyruvate ferredoxin/flavodoxin oxidoreductase family protein
662	 40.49	0	703693..704433	+	246	42526181	sufC	TDE0666	-	FeS assembly ATPase SufC
663	 45.47	+1	704430..705896	+	488	42526182	sufB	TDE0667	-	FeS assembly protein SufB
664	 39.27	0	705899..707026	+	375	42526183	sufD	TDE0668	-	FeS assembly protein SufD
665	 34.36	0	707039..707917	-	292	42526184	-	TDE0669	-	hypothetical protein
666	 42.47	0	708078..710453	+	791	42526185	lon	TDE0670	-	ATP-dependent protease La
667	 30.95	-1	710761..711138	+	125	42526186	-	TDE0671	-	PilT domain-containing protein
668	 26.16	-1	711250..712071	+	273	42526187	-	TDE0672	-	hypothetical protein
669	 31.42	-1	712130..713173	+	347	42526188	-	TDE0673	-	hypothetical protein
670	 44.56	+1	713301..714137	+	278	42526189	-	TDE0674	-	hypothetical protein
671	 40.68	0	714134..714991	+	285	42526190	-	TDE0675	-	hypothetical protein
672	 39.52	0	715000..715419	+	139	42526191	-	TDE0676	-	hypothetical protein
673	 43.10	+1	715518..716111	+	197	42526192	-	TDE0677	-	hypothetical protein
674	 42.03	0	716154..716498	+	114	42526193	-	TDE0678	-	hypothetical protein
675	 43.43	+1	716485..717633	+	382	42526194	-	TDE0679	-	aminotransferase, class V
676	 39.53	0	717703..718944	-	413	42526195	secF	TDE0680	-	preprotein translocase subunit SecF
677	 40.48	0	718946..720709	-	587	42526196	secD	TDE0681	-	preprotein translocase subunit SecD
678	 40.10	0	720755..721168	-	137	42526197	yajC	TDE0682	-	preprotein translocase, YajC subunit
679	 30.77	-1	721277..721393	-	38	42526198	-	TDE0683	-	hypothetical protein
680	 41.48	0	721913..722710	-	265	42526199	-	TDE0685	-	short chain dehydrogenase/reductase family oxidoreductase
681	 39.96	0	722867..723817	+	316	42526200	purC	TDE0686	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
682	 41.46	0	723814..724293	+	159	42526201	-	TDE0687	-	phosphoribosylaminoimidazole carboxylase, PurE protein
683	 33.33	0	724312..725817	+	501	42526202	-	TDE0688	-	hypothetical protein
684	 34.83	0	725830..727032	+	400	42526203	mtnK	TDE0689	-	methylthioribose kinase
685	 39.42	0	727038..728138	+	366	42526204	trmU	TDE0690	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
686	 33.02	0	728202..729788	+	528	42526205	-	TDE0691	-	ABC transporter, ATP-binding/permease protein
687	 34.11	0	729852..729980	+	42	42526206	-	TDE0692	-	hypothetical protein
688	 43.21	+1	730082..730891	+	269	42526207	thiD	TDE0693	-	phosphomethylpyrimidine kinase
689	 38.16	0	731130..732062	+	310	42526208	-	TDE0694	-	ABC transporter, ATP-binding protein
690	 31.63	0	732062..733117	+	351	42526209	-	TDE0695	-	hypothetical protein
691	 29.39	-1	733104..734270	+	388	42526210	-	TDE0696	-	hypothetical protein
692	 35.29	0	734310..734462	-	50	42526211	-	TDE0697	-	hypothetical protein
693	 31.40	-1	734712..735125	-	137	42526212	-	TDE0698	-	PilT domain-containing protein
694	 31.62	0	735109..735342	-	77	42526213	-	TDE0699	-	hypothetical protein
695	 35.77	0	735421..736488	-	355	42526214	-	TDE0700	-	hypothetical protein
696	 39.23	0	736609..737337	-	242	42526215	-	TDE0701	-	hypothetical protein
697	 39.81	0	737334..738059	-	241	42526216	-	TDE0702	-	ABC transporter, ATP-binding protein
698	 39.56	0	738056..738280	-	74	42526217	-	TDE0703	-	AbrB family transcriptional regulator
699	 42.05	0	738519..739436	-	305	42526218	-	TDE0704	-	SPFH domain-containing protein/band 7 family protein
700	 42.15	0	739429..740358	-	309	42526219	-	TDE0705	-	SPFH domain-containing protein/band 7 family protein
701	 31.99	0	740560..741672	+	370	42526220	-	TDE0706	-	adenine-specific DNA modification methyltransferase
702	 37.22	0	741685..744000	+	771	42526221	-	TDE0707	-	hypothetical protein
703	 41.28	0	744040..744555	+	171	42526222	-	TDE0708	-	nitroreductase family protein
704	 38.16	0	744571..745524	-	317	42526223	msrA	TDE0709	-	bifunctional methionine sulfoxide reductase A/B protein
705	 22.44	-2	745572..745727	+	51	42526224	-	TDE0710	-	hypothetical protein
706	 40.45	0	745780..746271	-	163	42526225	-	TDE0711	-	hypothetical protein
707	 36.14	0	746271..747053	-	260	42526226	-	TDE0712	-	hypothetical protein
708	 31.63	0	747249..747776	+	175	42526227	-	TDE0713	-	NusG family transcription antitermination protein
709	 40.39	0	747773..749260	+	495	42526228	-	TDE0714	-	capsular polysaccharide biosynthesis protein
710	 30.06	-1	749267..750610	+	447	42526229	-	TDE0715	-	hypothetical protein
711	 29.15	-1	750968..751804	+	278	42526230	-	TDE0716	-	CAAX amino terminal protease family protein
712	 32.95	0	751919..752440	+	173	42526231	-	TDE0717	-	hypothetical protein
713	 32.84	0	753355..753558	+	67	42526232	-	TDE0718	-	hypothetical protein
714	 35.33	0	753602..755755	+	717	42526233	-	TDE0719	-	bacteriocin ABC transporter, ATP-binding/permease protein, putative
715	 29.05	-1	755752..756894	+	380	42526234	-	TDE0720	-	bacteriocin ABC transporter, bacteriocin-binding protein, putative
716	 25.18	-2	756891..758276	+	461	42526235	-	TDE0721	-	hypothetical protein
717	 30.41	-1	758659..759924	+	421	42526236	-	TDE0722	-	putative lipoprotein
718	 33.33	0	760444..761721	+	425	42526237	-	TDE0723	-	hypothetical protein
719	 28.66	-1	761993..763297	+	434	42526238	-	TDE0724	-	hypothetical protein
720	 39.88	0	763605..764780	+	391	42526239	-	TDE0725	-	exopolysaccharide biosynthesis protein
721	 34.87	0	764784..766871	+	695	42526240	-	TDE0726	-	aldehyde oxidase and xanthine dehydrogenase family protein
722	 33.12	0	766861..767340	+	159	42526241	-	TDE0727	-	iron-sulfur cluster-binding protein
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.