IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
529	 31.35	-1	575710..576012	+	100	42526048	-	TDE0532	-	TPR domain-containing protein
530	 30.27	-1	576050..576637	+	195	42526049	-	TDE0533	-	hypothetical protein
531	 40.15	0	576653..577444	+	263	42526050	-	TDE0534	-	hypothetical protein
532	 44.21	+1	577463..578161	+	232	42526051	-	TDE0535	-	ABC transporter, ATP-binding protein
533	 36.95	0	578154..578954	-	266	42526052	-	TDE0536	-	hypothetical protein
534	 37.23	0	579164..580138	+	324	42526053	-	TDE0537	-	hypothetical protein
535	 35.98	0	580206..581189	+	327	42526054	-	TDE0538	-	hypothetical protein
536	 30.89	-1	581276..581602	+	108	42526055	-	TDE0539	-	hypothetical protein
537	 34.33	0	581604..582407	+	267	42526056	-	TDE0540	-	hypothetical protein
538	 33.64	0	582373..582696	+	107	42526057	-	TDE0541	-	hypothetical protein
539	 37.27	0	582720..583202	+	160	42526058	-	TDE0542	-	acetyltransferase
540	 33.64	0	583266..583913	+	215	42526059	-	TDE0543	-	hypothetical protein
541	 49.20	+2	583994..584926	+	310	42526060	-	TDE0544	-	hypothetical protein
542	 41.03	0	584914..585030	+	38	42526061	-	TDE0545	-	hypothetical protein
543	 27.08	-1	585049..585879	+	276	42526062	-	TDE0546	-	hypothetical protein
544	 36.95	0	586061..586972	-	303	42526063	-	TDE0547	-	hypothetical protein
545	 31.58	0	586972..587085	-	37	42526064	-	TDE0548	-	hypothetical protein
546	 37.07	0	587087..587407	-	106	42526065	-	TDE0549	-	TfoX domain-containing protein
547	 33.62	0	587460..587813	-	117	42526066	-	TDE0550	-	hypothetical protein
548	 33.90	0	587833..588363	-	176	42526067	-	TDE0551	-	hypothetical protein
549	 35.87	0	588419..589483	-	354	42526068	-	TDE0552	-	ankyrin repeat-containing protein
550	 36.67	0	589498..590397	-	299	42526069	-	TDE0553	-	hypothetical protein
551	 33.17	0	590429..591058	-	209	42526070	-	TDE0554	-	hypothetical protein
552	 33.89	0	591073..591612	-	179	42526071	-	TDE0555	-	hypothetical protein
553	 40.00	0	591628..592182	-	184	42526072	-	TDE0556	-	hypothetical protein
554	 33.52	0	592236..592763	-	175	42526073	-	TDE0557	-	hypothetical protein
555	 29.07	-1	592944..593576	+	210	42526074	-	TDE0558	-	hypothetical protein
556	 26.70	-1	593599..594186	+	195	42526075	-	TDE0559	-	hypothetical protein
557	 31.25	-1	594302..594397	+	31	42526076	-	TDE0560	-	hypothetical protein
558	 33.08	0	594385..594783	+	132	42526077	-	TDE0561	-	hypothetical protein
559	 33.50	0	595039..595641	+	200	42526078	-	TDE0562	-	hypothetical protein
560	 34.54	0	595872..596369	+	165	42526079	-	TDE0563	-	hypothetical protein
561	 32.87	0	596425..597075	+	216	42526080	-	TDE0564	-	hypothetical protein
562	 45.00	+1	597171..597290	+	39	42526081	-	TDE0565	-	hypothetical protein
563	 35.86	0	597325..597996	+	223	42526082	-	TDE0566	-	hypothetical protein
564	 36.99	0	597993..598976	+	327	42526083	-	TDE0567	-	hypothetical protein
565	 33.33	0	598989..599288	+	99	42526084	-	TDE0568	-	hypothetical protein
566	 45.86	+1	599776..600222	+	148	42526085	-	TDE0569	-	hypothetical protein
567	 47.88	+1	600309..601016	+	235	42526086	-	TDE0570	-	hypothetical protein
568	 54.75	+2	601275..603557	+	760	42526087	-	TDE0571	-	hypothetical protein
569	 51.25	+2	603634..604794	+	386	42526088	-	TDE0572	-	hypothetical protein
570	 49.33	+2	604821..604970	+	49	42526089	-	TDE0573	-	hypothetical protein
571	 44.64	+1	605065..605922	+	285	42526090	-	TDE0574	-	surface protein, putative
572	 43.18	+1	606342..607823	-	493	42526091	gatB	TDE0575	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
573	 43.90	+1	607816..609273	-	485	42526092	gatA	TDE0576	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
574	 38.78	0	609288..609599	-	103	42526093	gatC	TDE0577	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
575	 37.14	0	609633..609737	+	34	42526094	-	TDE0578	-	hypothetical protein
576	 36.36	0	609988..610119	-	43	42526095	-	TDE0579	-	hypothetical protein
577	 30.56	-1	615478..616776	+	432	42526096	-	TDE0580	-	hypothetical protein
578	 30.94	-1	616760..620476	+	1238	42526097	-	TDE0581	-	transglutaminase-like domain-containing protein
579	 37.77	0	620523..621491	+	322	42526098	-	TDE0582	-	hypothetical protein
580	 35.01	0	621516..622289	-	257	42526099	-	TDE0583	-	hypothetical protein
581	 36.53	0	622286..623224	-	312	42526100	-	TDE0584	-	permease, putative
582	 36.67	0	623228..625114	-	628	42526101	-	TDE0585	-	hypothetical protein
583	 33.65	0	625386..625700	+	104	42526102	-	TDE0586	-	hypothetical protein
584	 37.07	0	625889..626557	+	222	42526103	-	TDE0587	-	hypothetical protein
585	 45.87	+1	626590..628113	+	507	42526104	hutH	TDE0588	-	histidine ammonia-lyase
586	 46.73	+1	628217..629134	-	305	42526105	accA	TDE0589	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
587	 46.59	+1	629155..629946	-	263	42526106	accD	TDE0590	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
588	 48.03	+1	630123..631442	-	439	42526107	accC	TDE0591	-	acetyl-CoA carboxylase, biotin carboxylase
589	 48.61	+1	631453..632028	-	191	42526108	accB	TDE0592	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
590	 42.51	0	632131..634026	-	631	42526109	-	TDE0593	-	internalin-related protein
591	 34.47	0	634101..634895	-	264	42526110	-	TDE0594	-	cysteine protease domain-containing protein
592	 35.56	0	634928..635062	-	44	42526111	-	TDE0595	-	hypothetical protein
593	 37.22	0	635072..636100	-	342	42526112	-	TDE0596	-	hypothetical protein
594	 47.82	+1	636109..637302	-	397	42526113	-	TDE0597	-	trans-2-enoyl-CoA reductase
595	 46.77	+1	637448..638191	-	247	42526114	fabG	TDE0598	-	3-oxoacyl-(acyl-carrier-protein) reductase
596	 37.73	0	638281..638667	-	128	42526115	-	TDE0599	-	PilT domain-containing protein
597	 36.11	0	638652..638867	-	71	42526116	-	TDE0600	-	hypothetical protein
598	 46.83	+1	638924..639901	-	325	42526117	-	TDE0601	-	malonyl CoA-acyl carrier protein transacylase, putative
599	 45.41	+1	639926..640861	-	311	42526118	fabH	TDE0602	-	3-oxoacyl-(acyl-carrier-protein) synthase III
600	 41.07	0	641028..641945	+	305	42526119	-	TDE0603	-	hypothetical protein
601	 40.45	0	641921..642721	-	266	42526120	-	TDE0604	-	hypothetical protein
602	 39.49	0	642721..643305	-	194	42526121	-	TDE0605	-	hypothetical protein
603	 39.60	0	643329..644222	-	297	42526122	-	TDE0606	-	ParB family protein
604	 41.93	0	644215..644970	-	251	42526123	-	TDE0607	-	ParA family ATPase
605	 37.36	0	645084..645257	-	57	42526124	-	TDE0608	-	DNA-binding protein, putative
606	 38.72	0	645366..646256	-	296	42526125	-	TDE0609	-	hypothetical protein
607	 42.37	0	646447..647376	-	309	42526126	-	TDE0610	-	3-hydroxyacyl-CoA dehydrogenase, putative
608	 39.64	0	647369..647479	-	36	42526127	-	TDE0611	-	hypothetical protein
609	 38.10	0	647457..647561	-	34	42526128	-	TDE0612	-	hypothetical protein
610	 30.03	-1	647664..648056	-	130	42526129	-	TDE0613	-	hypothetical protein
611	 44.13	+1	648127..648876	+	249	42526130	cobM	TDE0614	-	precorrin-4 C11-methyltransferase
612	 38.60	0	648873..649916	+	347	42526131	cbiG	TDE0615	-	cobalamin biosynthesis protein CbiG
613	 38.00	0	649990..650139	+	49	42526132	-	TDE0616	-	hypothetical protein
614	 42.22	0	650183..650317	-	44	42526133	-	TDE0617	-	hypothetical protein
615	 42.11	0	650332..650445	-	37	42526134	-	TDE0618	-	hypothetical protein
616	 42.52	0	650458..652548	+	696	42526135	-	TDE0619	-	methyl-accepting chemotaxis protein
617	 35.29	0	652618..653433	+	271	42526136	-	TDE0620	-	hypothetical protein
618	 39.12	0	653454..654836	+	460	42526137	-	TDE0621	-	MATE efflux family protein
619	 37.71	0	654873..655808	-	311	42526138	-	TDE0622	-	radical SAM domain-containing protein
620	 43.29	+1	655923..656645	+	240	42526139	cobJ	TDE0623	-	precorrin-3B C17-methyltransferase
621	 37.94	0	656642..657400	+	252	42526140	-	TDE0624	-	precorrin-6X reductase, putative
622	 40.73	0	657393..658163	+	256	42526141	-	TDE0625	-	ABC transporter, ATP-binding protein
623	 39.87	0	658230..659744	+	504	42526142	-	TDE0626	-	hypothetical protein
624	 44.22	+1	659985..660728	+	247	42526143	grpE	TDE0627	-	co-chaperone protein GrpE
625	 44.41	+1	660749..662689	+	646	42526144	dnaK	TDE0628	-	molecular chaperone DnaK
626	 43.40	+1	662727..663908	+	393	42526145	dnaJ	TDE0629	-	chaperone protein DnaJ
627	 36.09	0	663980..665431	+	483	42526146	-	TDE0630	-	sigma factor regulatory protein, putative
628	 32.20	0	665435..667561	+	708	42526147	-	TDE0631	-	sigma factor regulatory protein, putative
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.