IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 1..2843201
2767 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
474	 37.84	0	533060..534367	-	435	42525993	-	TDE0477	-	hypothetical protein
475	 38.86	0	534423..535073	+	216	42525994	-	TDE0478	-	cyclic nucleotide binding domain-containing protein
476	 39.25	0	535119..536741	-	540	161579584	-	TDE0479	-	hydroxylamine reductase
477	 36.60	0	536829..538265	+	478	42525996	-	TDE0480	-	alpha-L-fucosidase family protein
478	 31.87	0	538287..538628	-	113	42525997	-	TDE0481	-	hypothetical protein
479	 32.88	0	538638..538856	-	72	42525998	-	TDE0482	-	hypothetical protein
480	 31.84	0	538945..539745	+	266	42525999	-	TDE0483	-	hypothetical protein
481	 39.13	0	539786..541906	-	706	42526000	-	TDE0484	-	methyl-accepting chemotaxis protein
482	 35.75	0	542096..542881	-	261	42526001	-	TDE0485	-	hypothetical protein
483	 35.96	0	542902..543702	-	266	42526002	-	TDE0486	-	hypothetical protein
484	 36.51	0	543718..544503	-	261	42526003	-	TDE0487	-	ABC transporter, ATP-binding protein
485	 41.58	0	544600..545205	+	201	42526004	-	TDE0488	-	putative lipoprotein
486	 32.89	0	545246..546145	-	299	42526005	-	TDE0489	-	hypothetical protein
487	 42.72	0	546362..546883	-	173	42526006	-	TDE0490	-	hypothetical protein
488	 35.33	0	546856..547608	+	250	42526007	-	TDE0491	-	hypothetical protein
489	 46.58	+1	547608..548717	+	369	42526008	-	TDE0492	-	sensor histidine kinase/response regulator
490	 35.83	0	548671..549432	-	253	42526009	-	TDE0493	-	hypothetical protein
491	 35.32	0	549649..550605	-	318	42526010	-	TDE0494	-	hypothetical protein
492	 36.36	0	550602..550931	-	109	42526011	-	TDE0495	-	hypothetical protein
493	 45.66	+1	551061..551279	-	72	42526012	-	TDE0496	-	DNA-binding protein, putative
494	 35.31	0	551464..551970	-	168	42526013	-	TDE0497	-	hypothetical protein
495	 33.96	0	552016..552333	-	105	42526014	-	TDE0498	-	hypothetical protein
496	 29.26	-1	552607..553587	-	326	42526015	-	TDE0499	-	hypothetical protein
497	 26.02	-1	553654..553776	-	40	42526016	-	TDE0500	-	hypothetical protein
498	 30.23	-1	554275..555402	-	375	42526017	-	TDE0501	-	hypothetical protein
499	 40.00	0	555584..556648	-	354	42526018	-	TDE0502	-	ankyrin repeat-containing protein
500	 36.50	0	556670..557521	-	283	42526019	-	TDE0503	-	hypothetical protein
501	 28.14	-1	557559..558194	-	211	42526020	-	TDE0504	-	hypothetical protein
502	 27.30	-1	558257..558538	-	93	42526021	-	TDE0505	-	hypothetical protein
503	 32.60	0	558535..558807	-	90	42526022	-	TDE0506	-	DNA-damage-inducible protein J, putative
504	 32.38	0	558873..559082	-	69	42526023	-	TDE0507	-	hypothetical protein
505	 29.85	-1	559133..559849	-	238	42526024	-	TDE0508	-	hypothetical protein
506	 37.19	0	559894..560463	-	189	42526025	-	TDE0509	-	hypothetical protein
507	 34.23	0	560503..561171	-	222	42526026	-	TDE0510	-	hypothetical protein
508	 33.33	0	561200..561322	-	40	42526027	-	TDE0511	-	hypothetical protein
509	 38.99	0	561374..561532	-	52	42526028	-	TDE0512	-	hypothetical protein
510	 39.97	0	561609..562331	-	240	42526029	-	TDE0513	-	hypothetical protein
511	 37.65	0	562510..562833	-	107	42526030	-	TDE0514	-	hypothetical protein
512	 43.00	0	562860..563873	-	337	42526031	-	TDE0515	-	hypothetical protein
513	 37.14	0	563898..564212	-	104	42526032	-	TDE0516	-	hypothetical protein
514	 35.08	0	564237..564695	-	152	42526033	-	TDE0517	-	hypothetical protein
515	 34.05	0	564793..565353	-	186	42526034	-	TDE0518	-	hypothetical protein
516	 36.23	0	565528..566079	-	183	42526035	-	TDE0519	-	hypothetical protein
517	 35.71	0	566164..566751	-	195	42526036	-	TDE0520	-	hypothetical protein
518	 35.07	0	566846..568342	-	498	42526037	-	TDE0521	-	carboxylesterase family protein
519	 42.94	0	568639..569304	+	221	42526038	-	TDE0522	-	hypothetical protein
520	 43.27	+1	569328..569921	-	197	42526039	-	TDE0523	-	hypothetical protein
521	 36.84	0	570157..570612	+	151	42526040	-	TDE0524	-	hypothetical protein
522	 31.84	0	570690..571223	+	177	42526041	-	TDE0525	-	hypothetical protein
523	 29.14	-1	571581..572390	+	269	42526042	-	TDE0526	-	hypothetical protein
524	 29.43	-1	572427..573221	+	264	42526043	-	TDE0527	-	hypothetical protein
525	 36.87	0	573346..573939	+	197	42526044	-	TDE0528	-	hypothetical protein
526	 29.14	-1	573941..574441	+	166	42526045	-	TDE0529	-	hypothetical protein
527	 33.11	0	574503..574943	+	146	42526046	-	TDE0530	-	hypothetical protein
528	 32.29	0	575014..575682	+	222	42526047	-	TDE0531	-	hypothetical protein
529	 31.35	-1	575710..576012	+	100	42526048	-	TDE0532	-	TPR domain-containing protein
530	 30.27	-1	576050..576637	+	195	42526049	-	TDE0533	-	hypothetical protein
531	 40.15	0	576653..577444	+	263	42526050	-	TDE0534	-	hypothetical protein
532	 44.21	+1	577463..578161	+	232	42526051	-	TDE0535	-	ABC transporter, ATP-binding protein
533	 36.95	0	578154..578954	-	266	42526052	-	TDE0536	-	hypothetical protein
534	 37.23	0	579164..580138	+	324	42526053	-	TDE0537	-	hypothetical protein
535	 35.98	0	580206..581189	+	327	42526054	-	TDE0538	-	hypothetical protein
536	 30.89	-1	581276..581602	+	108	42526055	-	TDE0539	-	hypothetical protein
537	 34.33	0	581604..582407	+	267	42526056	-	TDE0540	-	hypothetical protein
538	 33.64	0	582373..582696	+	107	42526057	-	TDE0541	-	hypothetical protein
539	 37.27	0	582720..583202	+	160	42526058	-	TDE0542	-	acetyltransferase
540	 33.64	0	583266..583913	+	215	42526059	-	TDE0543	-	hypothetical protein
541	 49.20	+2	583994..584926	+	310	42526060	-	TDE0544	-	hypothetical protein
542	 41.03	0	584914..585030	+	38	42526061	-	TDE0545	-	hypothetical protein
543	 27.08	-1	585049..585879	+	276	42526062	-	TDE0546	-	hypothetical protein
544	 36.95	0	586061..586972	-	303	42526063	-	TDE0547	-	hypothetical protein
545	 31.58	0	586972..587085	-	37	42526064	-	TDE0548	-	hypothetical protein
546	 37.07	0	587087..587407	-	106	42526065	-	TDE0549	-	TfoX domain-containing protein
547	 33.62	0	587460..587813	-	117	42526066	-	TDE0550	-	hypothetical protein
548	 33.90	0	587833..588363	-	176	42526067	-	TDE0551	-	hypothetical protein
549	 35.87	0	588419..589483	-	354	42526068	-	TDE0552	-	ankyrin repeat-containing protein
550	 36.67	0	589498..590397	-	299	42526069	-	TDE0553	-	hypothetical protein
551	 33.17	0	590429..591058	-	209	42526070	-	TDE0554	-	hypothetical protein
552	 33.89	0	591073..591612	-	179	42526071	-	TDE0555	-	hypothetical protein
553	 40.00	0	591628..592182	-	184	42526072	-	TDE0556	-	hypothetical protein
554	 33.52	0	592236..592763	-	175	42526073	-	TDE0557	-	hypothetical protein
555	 29.07	-1	592944..593576	+	210	42526074	-	TDE0558	-	hypothetical protein
556	 26.70	-1	593599..594186	+	195	42526075	-	TDE0559	-	hypothetical protein
557	 31.25	-1	594302..594397	+	31	42526076	-	TDE0560	-	hypothetical protein
558	 33.08	0	594385..594783	+	132	42526077	-	TDE0561	-	hypothetical protein
559	 33.50	0	595039..595641	+	200	42526078	-	TDE0562	-	hypothetical protein
560	 34.54	0	595872..596369	+	165	42526079	-	TDE0563	-	hypothetical protein
561	 32.87	0	596425..597075	+	216	42526080	-	TDE0564	-	hypothetical protein
562	 45.00	+1	597171..597290	+	39	42526081	-	TDE0565	-	hypothetical protein
563	 35.86	0	597325..597996	+	223	42526082	-	TDE0566	-	hypothetical protein
564	 36.99	0	597993..598976	+	327	42526083	-	TDE0567	-	hypothetical protein
565	 33.33	0	598989..599288	+	99	42526084	-	TDE0568	-	hypothetical protein
566	 45.86	+1	599776..600222	+	148	42526085	-	TDE0569	-	hypothetical protein
567	 47.88	+1	600309..601016	+	235	42526086	-	TDE0570	-	hypothetical protein
568	 54.75	+2	601275..603557	+	760	42526087	-	TDE0571	-	hypothetical protein
569	 51.25	+2	603634..604794	+	386	42526088	-	TDE0572	-	hypothetical protein
570	 49.33	+2	604821..604970	+	49	42526089	-	TDE0573	-	hypothetical protein
571	 44.64	+1	605065..605922	+	285	42526090	-	TDE0574	-	surface protein, putative
572	 43.18	+1	606342..607823	-	493	42526091	gatB	TDE0575	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
573	 43.90	+1	607816..609273	-	485	42526092	gatA	TDE0576	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
37.25	MEAN

5.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.